genome.fa.s24.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  115  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35781633--35781803	54	3.2	53	78	5	166	37	19	21	21	1.94
35781828--35781933	24	4.4	24	82	4	97	27	8	21	42	1.82
35782108--35782294	32	5.8	32	86	2	241	22	19	19	38	1.93
35782108--35782294	96	1.9	96	86	2	268	22	19	19	38	1.93
35786462--35786535	38	1.9	38	100	0	148	32	18	13	35	1.90
35804956--35805098	73	2.0	72	87	1	205	26	30	14	28	1.95
35804967--35805117	73	2.1	73	84	0	194	27	28	13	30	1.94
35812231--35812260	6	5.0	6	100	0	60	83	0	0	16	0.65
35819935--35820037	54	1.9	53	92	2	170	24	26	33	15	1.95
35821444--35821483	14	2.8	14	88	3	53	15	15	0	70	1.18
35822643--35822708	27	2.4	27	79	0	87	19	24	30	25	1.98
35829197--35829239	19	2.3	18	81	14	52	53	2	0	44	1.13
35834325--35834376	26	1.9	26	84	7	68	42	9	1	46	1.47
35834419--35834457	20	1.9	20	84	5	51	35	2	7	53	1.43
35836200--35836224	11	2.3	11	100	0	50	8	24	28	40	1.83
35837559--35837670	26	4.7	25	70	22	89	50	1	0	47	1.11
35837662--35837708	23	2.1	22	84	7	60	42	0	0	57	0.98
35843887--35843926	14	2.9	14	84	0	53	32	7	17	42	1.77
35843910--35843947	20	1.9	20	88	0	58	28	7	13	50	1.69
35848541--35848571	11	2.9	11	95	4	55	77	6	9	6	1.12
35849902--35850006	52	2.0	52	88	0	156	31	17	16	35	1.92
35852689--35852730	20	2.1	20	95	0	75	47	7	14	30	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35858813--35858981	42	4.0	42	77	3	153	18	21	18	40	1.91
35858833--35859002	84	2.0	84	83	0	214	16	21	19	42	1.89
35869975--35870018	19	2.2	20	84	4	54	63	6	4	25	1.38
35870301--35870410	56	1.9	57	96	1	204	33	7	21	37	1.81
35870688--35870727	11	3.5	12	83	10	57	32	0	0	67	0.91
35875013--35875043	16	1.9	16	93	0	53	48	0	9	41	1.36
35877141--35877326	50	3.6	50	78	7	185	27	29	17	25	1.97
35878862--35878916	20	2.9	19	75	21	62	58	0	5	36	1.21
35878854--35878938	9	9.3	9	72	20	70	55	1	4	38	1.29
35878853--35878916	20	3.5	19	74	19	55	57	0	4	37	1.19
35879012--35879089	31	2.5	32	85	6	97	50	12	6	30	1.66
35880167--35880227	30	2.0	30	90	6	97	32	11	21	34	1.89
35881606--35881648	18	2.5	17	78	10	52	53	11	11	23	1.69
35882274--35882475	63	3.2	63	79	6	230	28	26	18	26	1.98
35883027--35883063	4	9.5	4	94	5	67	75	0	24	0	0.80
35883031--35883093	20	3.0	23	84	13	75	69	0	28	1	0.97
35885518--35885552	16	2.2	16	94	0	61	8	11	0	80	0.92
35887751--35887784	12	2.8	12	86	0	50	8	14	47	29	1.75
35888771--35888909	32	4.4	32	88	0	181	39	20	20	19	1.93
35889091--35889133	11	3.7	11	76	11	50	51	25	6	16	1.69
35889081--35889179	24	4.1	24	89	0	126	47	21	8	23	1.77
35889081--35889191	24	4.6	24	86	4	125	46	20	7	25	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35889208--35889406	27	7.4	26	76	7	159	20	19	21	38	1.93
35889207--35889406	54	3.7	52	78	7	177	21	19	21	38	1.94
35889208--35889434	81	2.8	81	79	5	246	20	19	21	38	1.94
35889397--35889582	27	6.9	27	80	2	178	23	17	18	40	1.90
35889397--35889584	54	3.5	53	81	2	207	23	17	18	40	1.90
35901934--35901964	16	1.9	16	93	0	53	9	9	9	70	1.33
35903340--35903364	11	2.3	11	100	0	50	64	8	0	28	1.22
35906863--35906902	19	2.1	19	95	0	71	60	5	2	32	1.32
35908923--35908961	20	1.9	21	84	5	53	53	2	0	43	1.14
35911404--35911471	34	2.0	34	85	5	93	38	16	19	26	1.92
35918467--35918571	34	3.1	34	84	9	117	27	19	24	28	1.98
35918505--35918572	34	2.0	34	97	0	127	32	19	23	25	1.97
35926482--35926570	44	2.0	44	82	4	108	26	23	21	28	1.99
35928302--35928479	27	6.6	27	83	3	205	26	15	28	29	1.96
35928303--35928458	82	1.9	81	88	3	233	26	15	28	29	1.96
35928299--35928479	82	2.2	81	83	2	229	27	15	27	29	1.96
35930430--35930607	46	3.9	46	87	5	270	30	25	17	26	1.97
35942697--35942721	13	1.9	13	100	0	50	56	8	0	36	1.29
35942942--35942979	16	2.5	15	87	8	58	65	7	0	26	1.19
35947547--35947582	10	3.7	10	85	7	56	52	0	2	44	1.15
35955067--35955560	250	2.0	252	86	1	706	26	20	22	30	1.98
35955068--35955569	126	4.0	126	86	1	659	26	20	22	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35956311--35956961	130	5.0	130	94	0	1124	28	6	17	47	1.72
35956311--35956961	261	2.5	260	95	1	1180	28	6	17	47	1.72
35969580--35970011	44	9.9	44	86	1	526	25	25	18	29	1.98
35969580--35970011	131	3.3	131	84	1	551	25	25	18	29	1.98
35980918--35981095	27	6.6	27	83	5	180	28	28	16	26	1.97
35980939--35981094	82	1.9	81	86	3	224	28	28	16	26	1.97
35984983--35985026	23	2.0	22	82	13	54	31	20	4	43	1.72
35985257--35985347	45	2.0	45	95	0	164	31	26	17	24	1.97
35985352--35985524	50	3.4	50	78	13	176	32	29	15	23	1.95
35989232--35989329	50	2.0	50	95	0	178	32	14	15	37	1.87
35991706--35991731	12	2.2	12	100	0	52	26	0	7	65	1.20
35997411--35997484	30	2.5	30	84	0	85	22	28	33	14	1.94
35998795--35998947	75	2.0	75	92	0	252	27	13	20	39	1.89
36004151--36004236	44	2.0	44	88	0	127	47	4	10	37	1.59
36005339--36005397	29	2.0	30	86	3	84	30	1	11	55	1.46
36005589--36005650	31	2.1	30	82	11	74	46	20	4	27	1.71
36010266--36010299	17	2.0	17	88	0	50	64	0	0	35	0.94
36010230--36010343	41	2.7	41	84	4	138	62	0	1	35	1.12
36013511--36013894	27	14.2	27	83	5	390	19	18	21	41	1.91
36013926--36013981	20	2.9	19	78	7	51	25	32	23	19	1.98
36014974--36015053	25	3.2	24	77	10	81	25	18	25	31	1.98
36018654--36018739	6	14.0	6	69	13	59	72	3	5	18	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36018702--36018739	18	2.2	17	95	4	67	81	2	0	15	0.80
36018954--36018994	21	2.0	21	85	9	57	4	12	53	29	1.58
36029271--36029295	12	2.1	12	100	0	50	8	24	40	28	1.83
36030852--36030977	43	3.0	40	71	22	114	24	17	26	31	1.97
36032787--36033135	50	6.8	50	85	4	437	21	30	21	26	1.99
36034627--36034968	23	14.6	23	84	3	432	27	11	19	42	1.85
36034627--36034968	47	7.3	46	86	3	432	27	11	19	42	1.85
36034636--36034968	70	4.7	70	85	5	440	27	11	19	42	1.85
36039777--36039814	18	2.1	18	85	9	51	28	21	2	47	1.64
36050993--36051025	12	2.7	12	95	4	57	57	6	0	36	1.23
36052327--36052360	12	2.6	13	86	13	52	20	5	23	50	1.70
36053281--36053374	49	1.9	49	83	10	122	29	4	4	61	1.34
36053235--36053547	137	2.4	126	84	6	403	32	15	6	45	1.71
36056662--36056686	11	2.3	11	100	0	50	44	24	8	24	1.80
36074376--36074423	22	2.2	22	85	14	64	68	2	6	22	1.23
36075862--36075901	21	2.0	21	85	14	57	17	2	12	67	1.33
36076088--36076425	86	4.0	85	79	5	337	32	12	10	44	1.76
36076083--36076426	88	4.0	87	79	5	328	33	12	10	43	1.76
36076259--36076416	81	2.0	78	85	3	208	33	10	8	47	1.68
36091362--36091488	41	3.2	40	76	3	114	33	28	22	15	1.95
36100117--36100178	30	2.1	30	87	0	88	25	6	8	59	1.50
36107426--36107466	21	2.0	21	90	0	64	19	29	21	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36111435--36111490	20	2.8	19	84	10	67	26	3	1	67	1.16
36115541--36115567	2	13.5	2	100	0	54	48	0	51	0	1.00
36116466--36116524	22	3.0	19	75	18	57	42	0	1	55	1.09
36121844--36122040	50	4.0	49	74	10	141	32	14	18	34	1.91
36126377--36126415	20	2.0	20	94	0	69	33	28	33	5	1.79
36136940--36137122	50	3.5	50	79	5	152	24	30	19	25	1.98
36136986--36137128	50	2.7	52	81	8	173	23	32	21	23	1.98
36137096--36137630	173	3.2	173	60	17	393	26	24	20	28	1.99
36137269--36137457	50	3.7	50	81	4	198	23	30	21	24	1.99
36136809--36138345	329	4.7	328	96	0	2815	25	26	19	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240