genome.fa.s24.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  103  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31894898--31895167	101	2.7	98	80	5	290	40	15	17	26	1.89
31895112--31895457	87	4.0	87	77	7	299	41	14	16	27	1.87
31895405--31896261	101	8.8	97	72	12	394	38	18	15	27	1.91
31895661--31895941	88	3.2	88	80	1	303	37	16	17	28	1.92
31895836--31896322	100	4.8	98	76	7	377	38	17	16	27	1.91
31895836--31896402	101	5.8	101	77	8	483	39	17	15	27	1.90
31896237--31896512	88	3.2	86	77	10	238	38	18	14	28	1.90
31896161--31896809	278	2.4	270	83	5	836	37	17	15	29	1.91
31896558--31896784	82	2.7	82	80	5	249	37	15	17	29	1.91
31896619--31897070	188	2.4	183	79	4	476	39	17	15	27	1.90
31896638--31897131	188	2.6	187	78	5	466	39	17	16	27	1.90
31896977--31897249	88	3.1	86	79	7	282	37	15	17	29	1.91
31897347--31899508	100	22.4	97	72	12	765	38	17	15	28	1.91
31897340--31898325	101	10.1	101	72	10	585	36	18	16	28	1.92
31898109--31898666	289	1.9	290	80	1	654	38	18	14	28	1.90
31898530--31898943	88	4.7	87	75	5	314	39	13	16	29	1.88
31898510--31898943	175	2.5	176	78	6	432	39	14	16	29	1.89
31898530--31898946	87	4.8	86	77	5	372	39	13	16	29	1.88
31900733--31901297	101	5.6	100	82	3	659	39	18	15	26	1.90
31900733--31901697	201	4.9	201	81	5	1070	39	19	15	26	1.91
31901191--31901384	87	2.2	88	90	2	302	38	19	17	24	1.92
31901279--31901697	100	4.2	100	84	2	518	38	21	15	24	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31903581--31903892	156	2.0	157	86	4	434	40	11	4	43	1.62
31904409--31904772	101	3.8	101	77	14	334	38	18	15	27	1.91
31904517--31904677	87	1.9	86	83	6	209	39	14	18	27	1.90
31905889--31905953	32	2.0	32	100	0	130	21	21	12	44	1.85
31917443--31918088	100	6.4	100	79	6	637	41	17	15	25	1.89
31917443--31918249	101	8.1	101	79	7	794	40	17	15	27	1.89
31917443--31918249	201	4.1	201	82	3	798	40	17	15	27	1.89
31918010--31918176	88	1.9	87	90	3	264	40	13	17	28	1.88
31918199--31918295	46	2.1	46	88	1	142	44	8	11	36	1.70
31918245--31919043	100	7.9	100	80	5	678	42	17	14	25	1.86
31918245--31924395	201	31.4	198	73	12	3079	39	18	15	26	1.90
31918952--31919219	88	3.1	88	89	0	385	36	19	19	24	1.94
31919113--31920312	100	12.1	100	70	11	587	39	18	15	25	1.90
31919025--31924444	289	18.5	287	73	12	3353	39	18	15	26	1.91
31920224--31920398	86	2.0	87	83	5	221	41	16	16	25	1.88
31920303--31921287	100	10.0	101	80	4	958	38	19	15	26	1.92
31920494--31920688	88	2.2	88	84	3	259	37	18	16	27	1.92
31921282--31921778	101	4.9	100	79	6	459	39	19	14	26	1.90
31921672--31921865	87	2.2	87	82	2	219	40	19	13	26	1.89
31921760--31922066	101	3.0	101	85	1	375	37	20	16	25	1.93
31921982--31922242	87	3.0	86	74	3	245	40	14	14	30	1.86
31922149--31924395	101	22.8	101	75	9	1372	39	17	16	26	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31922438--31922708	88	3.1	88	80	2	278	38	14	16	30	1.89
31923017--31923183	88	1.9	84	81	4	199	38	15	16	28	1.90
31923175--31923449	150	1.8	150	88	4	421	37	20	16	25	1.93
31923470--31923569	46	2.2	46	87	3	139	47	8	10	35	1.67
31923376--31923666	147	2.0	146	86	2	404	42	15	12	29	1.84
31923523--31924395	100	8.7	100	83	2	998	40	18	15	25	1.90
31935344--31935763	47	8.9	47	96	0	723	32	9	30	27	1.89
31935882--31935960	37	2.1	37	88	0	113	25	18	30	25	1.98
31943311--31943410	42	2.4	42	94	0	173	29	12	30	29	1.92
31944609--31945206	222	2.7	221	91	1	955	33	18	20	28	1.96
31944464--31945075	134	4.6	132	75	9	442	33	18	20	28	1.96
31944831--31945117	134	2.1	134	84	2	371	32	18	20	28	1.96
31944475--31945205	88	8.3	88	73	8	344	32	18	20	28	1.96
31945229--31945331	46	2.3	46	86	3	138	33	20	16	29	1.94
31964043--31964069	6	4.5	6	100	0	54	18	0	29	51	1.46
31964477--31964518	22	1.9	22	85	0	57	73	2	23	0	0.94
31967917--31967999	10	8.4	10	73	20	52	53	2	0	44	1.13
31968554--31968605	14	3.9	14	80	12	65	5	11	3	78	1.05
31968541--31968608	35	1.9	35	82	11	86	5	14	2	76	1.09
31969776--31969812	17	2.2	17	90	0	56	27	2	18	51	1.60
31971043--31971117	23	3.2	24	61	21	59	32	6	32	29	1.83
31971041--31971226	46	4.0	46	95	0	318	34	8	27	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31973863--31973938	38	2.0	38	97	0	143	28	23	17	30	1.97
31974922--31974964	23	1.9	22	90	4	68	13	6	2	76	1.08
31974927--31975003	24	3.3	23	73	26	56	16	5	5	72	1.21
31974946--31975000	28	2.0	28	82	7	67	16	3	5	74	1.15
31975005--31975030	13	2.0	13	100	0	52	38	0	7	53	1.30
31974997--31975141	21	6.8	23	70	21	82	42	0	1	55	1.13
31975030--31975108	38	2.1	35	86	9	86	40	1	0	58	1.06
31975217--31975287	13	5.5	13	67	21	51	42	0	0	57	0.98
31975216--31975262	22	2.1	22	92	0	76	44	0	0	55	0.99
31975204--31975278	38	2.1	37	87	7	109	41	0	1	57	1.07
31975250--31975281	16	2.0	16	100	0	64	37	0	0	62	0.95
31981122--31981275	43	3.6	42	70	14	118	26	18	25	28	1.98
31982050--31982386	44	7.7	44	88	0	496	30	12	18	39	1.87
31982050--31982386	88	3.8	88	92	0	550	30	12	18	39	1.87
31982229--31982372	11	13.2	11	62	17	50	29	10	19	40	1.85
31982053--31982386	22	15.2	22	83	0	409	29	12	18	39	1.87
31987124--31987166	20	2.2	19	84	12	52	62	4	2	30	1.28
31987968--31988063	9	9.9	9	69	20	52	30	4	2	63	1.24
31987948--31988025	30	2.5	32	88	10	110	30	3	2	62	1.26
31987948--31988035	10	8.7	10	67	12	54	30	3	2	63	1.23
31987968--31988047	41	1.9	42	82	7	101	31	5	2	61	1.31
31988009--31988108	26	3.7	27	72	11	87	32	6	2	60	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31995704--31995798	44	2.2	44	90	0	145	40	21	10	28	1.86
32003432--32003492	25	2.4	27	76	18	67	4	36	3	55	1.38
32003631--32003662	12	2.7	12	95	0	55	56	6	18	18	1.62
32003985--32004010	13	2.0	13	100	0	52	15	7	7	69	1.35
32009487--32010716	252	4.9	251	93	1	1910	18	28	15	38	1.91
32025660--32025869	44	4.8	43	68	17	110	30	18	26	23	1.98
32025698--32026278	44	13.2	44	65	12	138	30	19	24	25	1.98
32025648--32026472	132	6.2	132	93	0	1362	30	20	24	24	1.98
32026562--32026682	44	2.7	45	80	2	129	33	18	20	27	1.96
32025648--32026654	396	2.5	396	84	4	1102	30	19	24	25	1.98
32026578--32026698	44	2.8	45	79	3	122	31	19	22	26	1.98
32028201--32028253	21	2.5	21	77	17	65	33	1	1	62	1.17
32028883--32029073	98	1.9	98	93	0	328	27	10	25	36	1.90
32030245--32030285	21	2.0	20	85	4	55	51	4	2	41	1.36
32043129--32043606	231	2.1	231	97	0	893	34	13	29	22	1.92
32043129--32043680	231	2.4	231	91	1	804	34	13	29	21	1.92
32064399--32064646	125	2.0	126	93	0	426	29	15	22	32	1.95
32067445--32067568	46	2.8	46	91	3	200	27	22	16	33	1.96
32067445--32067679	37	5.8	45	87	8	207	26	21	15	36	1.93
32067530--32067706	37	4.8	37	95	0	300	26	20	13	38	1.90
32071573--32071610	20	1.9	20	84	10	51	55	7	2	34	1.43
32072503--32072546	12	3.8	12	81	3	54	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32072615--32072654	11	3.6	11	90	6	55	45	0	32	22	1.53
32075152--32075219	24	2.8	24	86	0	91	50	20	8	20	1.75
32086424--32086464	21	2.0	21	90	0	64	19	29	21	29	1.98
32091196--32091365	90	1.9	91	91	3	281	45	11	6	36	1.67
32094437--32094719	91	3.0	91	86	7	356	46	2	2	48	1.31
32094437--32094676	47	5.3	47	73	15	209	46	2	3	47	1.34
32094634--32094682	24	2.1	23	85	11	64	44	2	2	51	1.24
32094898--32094932	18	2.0	17	88	5	52	45	0	0	54	0.99
32095018--32095052	18	2.0	17	88	5	52	45	0	0	54	0.99
32094661--32095074	120	3.5	120	96	2	753	43	2	5	48	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240