genome.fa.s24.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  131  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40677128--40677202	12	6.0	12	71	13	53	52	2	4	41	1.34
40677133--40677214	37	2.2	36	82	6	92	60	2	3	32	1.27
40679813--40679938	22	5.8	22	74	10	107	15	17	19	47	1.83
40679813--40679934	44	2.8	43	82	2	129	15	18	19	46	1.84
40683067--40683291	40	5.7	40	85	5	278	24	21	28	25	1.99
40683154--40683324	80	2.2	79	83	6	204	26	19	28	25	1.99
40683067--40683324	119	2.2	119	80	6	274	25	20	27	25	1.99
40691076--40691299	40	5.7	40	84	6	278	24	21	28	25	1.99
40691076--40691299	79	2.8	79	83	7	258	24	21	28	25	1.99
40695117--40695164	17	2.9	17	84	3	62	41	37	2	18	1.63
40695364--40695410	17	2.8	17	86	0	58	38	34	10	17	1.84
40695709--40695748	16	2.7	15	84	7	55	32	25	12	30	1.92
40695852--40695987	52	2.6	51	87	4	191	36	22	11	29	1.90
40709461--40709599	66	2.1	68	86	5	194	39	4	19	36	1.71
40718428--40718650	79	2.8	77	82	9	254	24	27	22	25	2.00
40718428--40718650	39	5.7	40	86	7	264	24	27	22	25	2.00
40719728--40719752	13	1.9	13	100	0	50	0	8	4	88	0.64
40726358--40726580	79	2.8	79	82	9	267	25	27	21	25	2.00
40726358--40726580	39	5.7	40	85	8	257	25	27	21	25	2.00
40726358--40726578	118	1.9	119	82	11	285	24	27	21	25	1.99
40728604--40728648	17	2.8	17	84	15	60	46	4	4	44	1.43
40728620--40728665	17	2.6	18	83	12	60	45	0	4	50	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40728505--40728983	252	1.9	252	85	2	667	39	7	7	45	1.60
40728505--40729127	252	2.6	245	81	8	659	38	8	6	45	1.62
40729423--40729454	15	2.1	16	94	5	57	34	0	0	65	0.93
40733931--40734021	33	2.8	33	81	5	96	34	17	20	27	1.95
40735261--40735312	15	3.5	15	79	10	61	17	32	28	21	1.96
40735251--40735321	30	2.4	30	92	0	115	21	35	26	16	1.95
40735272--40735337	30	2.2	30	86	5	89	18	34	28	18	1.94
40738726--40738768	21	2.0	21	86	8	61	48	2	16	32	1.58
40739840--40739880	20	2.0	20	90	0	64	46	4	14	34	1.66
40745416--40745470	21	2.6	21	79	0	65	27	30	20	21	1.98
40754281--40754347	27	2.5	27	95	0	116	44	25	10	19	1.82
40769776--40769829	20	2.8	20	75	11	58	55	7	1	35	1.39
40771511--40771758	43	5.7	43	77	0	208	28	29	18	23	1.98
40771550--40771783	87	2.7	86	82	2	254	27	29	16	26	1.97
40771526--40771772	130	1.9	130	80	1	289	29	29	17	23	1.97
40772110--40772197	21	4.2	21	80	2	97	9	43	13	34	1.76
40772184--40772354	66	2.6	65	82	7	184	14	26	15	43	1.86
40777773--40779470	9	187.8	9	68	20	396	39	1	13	45	1.54
40777778--40777897	16	7.9	16	69	19	96	35	1	17	45	1.58
40777792--40777946	25	6.2	25	77	11	129	38	1	15	45	1.55
40777818--40778784	34	28.2	35	69	18	216	39	1	13	44	1.54
40777976--40779416	31	45.5	31	77	11	1295	39	1	12	45	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40777880--40779419	65	24.4	64	76	12	999	39	1	13	45	1.53
40778103--40778199	50	1.9	50	85	4	133	41	1	15	42	1.54
40777978--40779403	130	11.2	129	81	10	1231	39	1	12	46	1.53
40779375--40779469	47	2.0	49	85	6	131	37	0	14	47	1.45
40780446--40780508	33	1.9	33	90	3	101	65	14	0	20	1.27
40780464--40780508	17	2.7	17	75	25	51	68	13	0	17	1.20
40781956--40782009	23	2.5	22	82	8	58	44	0	7	48	1.31
40781958--40782024	20	3.2	21	73	14	50	47	0	7	44	1.31
40782031--40782076	22	2.1	22	88	8	67	13	6	0	80	0.89
40782043--40782076	11	3.1	11	87	12	52	14	2	0	82	0.79
40782740--40783055	89	3.8	84	86	8	400	44	24	1	29	1.63
40782963--40783001	21	1.9	21	89	5	62	38	41	0	20	1.53
40782831--40783055	81	2.8	79	87	4	301	44	23	1	30	1.61
40782831--40783062	80	2.9	76	80	9	252	44	23	1	31	1.61
40783575--40783838	41	6.5	41	86	3	338	35	23	22	18	1.96
40783871--40784005	40	3.4	39	74	4	112	20	20	21	37	1.94
40784167--40784199	16	2.0	17	88	5	50	45	0	15	39	1.46
40784445--40784471	7	3.9	7	100	0	54	40	0	29	29	1.57
40796493--40796527	16	2.3	16	90	9	56	65	0	0	34	0.93
40808448--40808915	234	2.0	234	100	0	936	26	25	15	32	1.95
40810422--40810464	5	8.8	5	92	5	52	46	0	9	44	1.35
40810322--40810814	256	1.9	248	84	8	647	46	6	10	36	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40810907--40810938	16	1.9	17	93	6	57	43	0	0	56	0.99
40830356--40830802	226	2.0	225	98	0	867	28	24	18	29	1.98
40831756--40831812	29	2.0	29	82	6	71	42	1	5	50	1.35
40831876--40831942	33	2.1	31	89	10	100	41	1	5	50	1.36
40832028--40832075	18	2.6	19	87	6	64	41	0	4	54	1.20
40833060--40833113	18	3.1	17	81	7	63	44	1	18	35	1.61
40833463--40833508	19	2.4	19	85	3	56	45	0	17	36	1.49
40838023--40838107	25	3.4	25	77	6	109	30	21	18	29	1.97
40843434--40843846	29	14.3	29	72	10	249	25	15	20	38	1.92
40843490--40843877	58	6.7	58	78	7	295	26	15	21	37	1.92
40843830--40843890	29	2.1	29	82	11	72	40	14	19	24	1.89
40857481--40857904	140	3.1	136	90	4	634	39	7	5	46	1.56
40860249--40860280	12	2.7	12	95	0	55	28	0	37	34	1.57
40860504--40860554	23	2.3	22	80	10	59	39	17	7	35	1.79
40861029--40861059	15	2.0	16	93	6	55	58	6	9	25	1.54
40864345--40864371	8	3.4	8	100	0	54	22	0	33	44	1.53
40871051--40871166	20	5.8	20	76	4	72	13	28	21	36	1.92
40872226--40872279	15	3.5	15	80	7	56	48	7	1	42	1.42
40875574--40875605	15	2.1	15	100	0	64	21	21	37	18	1.94
40879656--40879705	16	2.9	17	76	8	57	48	4	2	46	1.32
40890575--40890692	27	4.4	27	90	0	182	43	18	17	20	1.89
40892102--40892140	20	1.9	21	85	15	55	61	17	0	20	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40893996--40894026	11	2.8	11	100	0	62	54	9	0	35	1.33
40895459--40895513	29	1.9	29	85	3	76	80	5	9	5	1.03
40895450--40895494	18	2.4	19	85	10	58	80	6	11	2	0.99
40899488--40899525	18	2.2	17	86	9	51	55	0	7	36	1.29
40901257--40901512	132	2.0	131	87	2	372	17	12	14	55	1.70
40904442--40904506	30	2.2	30	82	0	76	32	4	26	36	1.77
40906890--40907036	42	3.5	42	70	9	138	37	23	19	19	1.94
40906890--40906950	21	2.9	22	70	7	54	37	27	18	16	1.92
40906869--40907038	83	2.0	83	93	0	286	37	23	18	20	1.94
40906975--40907036	21	3.0	21	73	7	63	35	24	20	19	1.96
40907200--40907257	29	2.0	29	93	0	98	37	20	0	41	1.53
40908738--40908780	11	3.8	11	78	6	50	65	4	0	30	1.13
40911215--40911808	309	1.9	309	91	0	974	26	17	22	34	1.96
40915104--40915143	19	2.2	19	86	4	55	37	12	10	40	1.77
40920566--40920729	62	2.7	59	78	15	169	42	1	3	52	1.26
40920857--40920913	16	3.5	15	75	15	51	29	19	5	45	1.72
40921133--40921183	26	2.0	26	88	3	77	45	0	7	47	1.32
40923258--40923317	29	2.0	32	83	9	81	48	6	26	18	1.72
40925817--40925855	18	2.2	18	95	0	69	0	56	0	43	0.99
40925817--40925858	6	6.8	6	84	13	50	0	54	0	45	0.99
40925920--40925987	3	22.0	3	74	16	59	2	32	2	61	1.26
40925921--40925987	25	2.9	24	82	10	86	2	31	2	62	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40925930--40925987	14	4.4	14	72	12	50	3	31	3	62	1.29
40926219--40926244	11	2.4	11	100	0	52	23	0	15	61	1.33
40928557--40928595	20	2.0	20	94	0	69	48	0	2	48	1.15
40928694--40928733	20	2.0	20	90	0	62	50	12	10	27	1.72
40928717--40928756	14	2.9	14	84	0	53	42	17	7	32	1.77
40935380--40935554	85	2.1	85	92	0	287	34	18	21	25	1.96
40935980--40936028	25	2.0	25	87	0	71	59	14	2	24	1.46
40936593--40936654	29	2.1	30	87	3	90	51	4	9	33	1.56
40937645--40937677	16	2.1	16	94	0	57	60	0	12	27	1.32
40938675--40938711	16	2.3	16	86	13	58	40	0	0	59	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240