genome.fa.s24.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  154  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48561946--48561976	6	5.2	6	92	0	53	3	12	0	83	0.75
48562124--48562159	18	2.0	18	94	0	63	41	5	2	50	1.40
48565742--48565823	30	2.7	30	82	0	101	14	29	31	24	1.95
48566757--48566792	17	2.1	17	90	10	56	41	5	0	52	1.24
48567630--48567671	17	2.4	18	84	4	50	66	9	0	23	1.21
48572246--48572272	14	1.9	14	100	0	54	44	3	0	51	1.19
48573139--48573192	21	2.5	22	76	11	67	57	3	5	33	1.40
48573331--48573369	19	2.1	19	85	9	53	43	12	5	38	1.65
48573933--48573972	19	2.1	19	95	0	71	17	10	2	70	1.27
48576708--48576734	13	2.1	13	100	0	54	25	29	7	37	1.83
48586217--48586449	54	4.1	54	73	14	225	43	1	7	47	1.41
48586221--48586307	28	3.2	27	66	18	72	44	2	9	43	1.48
48586319--48586370	15	3.6	15	80	12	56	44	0	1	53	1.11
48586271--48586486	120	1.8	120	100	0	432	42	1	6	49	1.38
48586448--48586489	15	2.7	16	82	14	52	45	0	2	52	1.13
48586439--48586480	15	2.9	15	82	10	52	47	0	0	52	1.00
48586616--48586725	45	2.6	41	78	8	107	33	28	5	32	1.80
48586706--48586741	16	2.2	16	100	0	72	38	36	0	25	1.56
48586926--48586957	16	1.9	17	93	6	57	59	15	0	25	1.36
48607119--48607165	22	2.1	22	84	0	58	46	14	21	17	1.83
48608548--48608592	21	2.1	21	87	4	63	28	4	8	57	1.48
48613943--48614004	31	2.0	31	100	0	124	22	16	22	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48614760--48614795	5	7.2	5	93	0	63	58	2	38	0	1.13
48629877--48629942	31	2.2	30	86	5	89	54	3	3	39	1.31
48639607--48639663	29	1.9	30	82	13	73	19	28	28	24	1.98
48648434--48648467	16	2.1	16	94	0	59	32	5	29	32	1.81
48656532--48656629	26	3.8	26	75	13	96	59	0	1	39	1.04
48656521--48656568	21	2.5	20	86	10	64	58	0	0	41	0.98
48656534--48656629	27	3.7	26	77	14	110	60	0	1	38	1.04
48656570--48656605	11	3.3	11	100	0	72	58	0	0	41	0.98
48656528--48656644	49	2.4	51	87	8	165	58	0	1	40	1.08
48656562--48656652	38	2.3	39	85	11	123	61	0	2	36	1.08
48656534--48656652	38	3.1	38	81	11	120	61	0	1	36	1.06
48668895--48669004	29	3.8	28	81	2	103	20	25	25	28	1.99
48672895--48673105	51	4.2	51	90	0	334	32	24	11	32	1.90
48672895--48673204	102	3.2	101	82	10	342	32	23	11	32	1.90
48673059--48673142	36	2.3	37	93	2	143	34	25	9	30	1.88
48673008--48673192	87	2.1	87	91	0	298	34	23	10	31	1.88
48673095--48673204	51	2.2	51	88	1	159	32	23	10	33	1.88
48673278--48673310	17	1.9	17	88	11	50	45	18	0	36	1.49
48676866--48676896	15	2.0	16	93	6	55	35	0	0	64	0.94
48695679--48695742	29	2.2	30	91	5	112	45	3	26	25	1.68
48704422--48704489	21	3.3	21	72	4	66	55	14	8	20	1.65
48706685--48706719	18	1.9	18	88	0	52	45	2	0	51	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48706690--48706740	18	2.7	19	81	3	50	58	3	1	35	1.28
48707829--48707867	20	2.0	19	85	5	51	25	0	2	71	0.98
48708488--48708520	16	2.1	16	88	11	50	39	0	3	57	1.14
48710399--48710429	5	6.2	5	92	0	53	16	0	0	83	0.64
48720670--48720740	28	2.5	28	86	4	90	47	7	1	43	1.39
48722411--48722444	14	2.2	16	80	20	54	58	14	5	20	1.57
48722415--48722444	14	2.1	14	100	0	60	60	13	6	20	1.55
48723684--48723724	21	2.0	21	85	9	57	29	21	26	21	1.99
48723931--48723991	18	3.6	18	70	20	58	22	21	34	21	1.97
48723933--48724000	33	2.1	33	91	0	109	19	22	36	22	1.95
48723981--48724018	18	2.1	18	90	0	58	18	21	42	18	1.90
48724020--48724063	15	2.9	15	89	0	70	18	13	36	31	1.90
48733857--48733953	51	1.9	50	95	2	176	42	17	9	30	1.81
48758921--48758946	13	2.0	13	100	0	52	30	0	0	69	0.89
48758938--48758967	11	2.7	11	94	0	51	46	0	0	53	1.00
48761608--48761653	18	2.6	18	82	6	58	30	8	23	36	1.85
48763585--48763617	15	2.2	15	89	10	50	57	12	0	30	1.35
48771791--48772104	157	2.0	157	100	0	628	38	21	14	26	1.91
48774202--48774243	19	2.4	17	84	15	50	40	4	21	33	1.74
48774804--48774899	45	2.1	46	92	3	158	52	2	6	39	1.39
48777501--48777604	28	3.7	28	86	1	136	29	10	25	33	1.90
48778327--48778385	23	2.6	23	84	7	68	27	20	15	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48778349--48778627	48	5.9	48	68	12	114	25	12	18	43	1.86
48778350--48778660	46	6.6	46	71	11	211	25	12	19	42	1.86
48778371--48778737	94	3.9	95	89	2	515	26	11	18	42	1.85
48778501--48778638	23	5.9	22	65	17	73	25	10	19	44	1.83
48785027--48785130	28	3.7	28	88	1	145	29	11	25	32	1.91
48785876--48786261	94	4.1	93	89	3	524	26	13	18	41	1.88
48785852--48786173	23	13.8	22	67	17	91	26	14	18	40	1.89
48786973--48787012	6	6.7	6	97	0	71	55	0	27	17	1.43
48791190--48791260	26	2.7	25	78	8	70	47	4	1	46	1.30
48794111--48794265	51	3.0	52	83	3	208	23	15	29	32	1.95
48799184--48799227	21	2.1	21	83	8	54	25	9	2	63	1.35
48803804--48803828	6	4.2	6	100	0	50	48	0	0	52	1.00
48803860--48803898	17	2.3	17	86	0	51	33	2	5	58	1.33
48803943--48803989	12	3.8	13	86	8	64	31	0	4	63	1.13
48805031--48805060	15	2.0	15	93	0	51	30	36	20	13	1.90
48807729--48807773	6	7.5	6	92	0	54	60	0	22	17	1.37
48807728--48807773	12	3.8	12	85	0	65	60	0	21	17	1.35
48807914--48807978	27	2.4	27	85	7	80	41	9	13	35	1.77
48810168--48810247	23	3.5	23	96	0	151	47	15	8	28	1.75
48810185--48810247	11	5.5	11	70	7	54	47	14	7	30	1.72
48813661--48814094	27	16.1	27	81	1	395	25	15	19	40	1.90
48813672--48814094	54	7.8	54	84	1	481	25	14	19	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48813672--48814094	81	5.2	81	83	2	499	25	14	19	40	1.90
48815252--48815307	25	2.4	22	78	16	67	17	44	14	23	1.85
48817851--48818352	27	18.7	27	85	2	589	24	15	19	40	1.90
48819504--48819554	25	2.0	25	92	0	84	15	47	13	23	1.82
48819505--48819560	25	2.4	23	85	8	69	16	48	14	21	1.81
48821685--48821867	39	4.7	40	80	10	207	25	27	22	25	2.00
48837580--48837644	32	2.0	32	96	0	121	38	20	18	23	1.93
48838126--48838152	12	2.2	12	100	0	54	14	14	33	37	1.88
48847825--48847850	13	2.0	13	100	0	52	23	7	30	38	1.83
48855617--48855666	26	1.9	26	83	0	64	36	20	22	22	1.96
48864320--48864349	8	3.6	8	95	4	51	40	23	0	36	1.55
48877399--48877456	26	2.2	26	84	6	73	36	0	1	62	1.06
48877426--48877452	8	3.4	8	100	0	54	44	0	0	55	0.99
48877420--48877464	16	2.8	16	79	3	54	40	0	0	60	0.97
48879899--48879928	15	2.0	15	93	0	51	33	0	10	56	1.32
48881072--48881159	45	2.0	44	93	2	149	30	13	10	45	1.77
48882880--48882913	10	3.4	10	91	0	50	29	29	14	26	1.95
48888306--48888455	3	50.0	3	85	0	192	32	4	2	61	1.28
48891907--48891945	18	2.2	18	85	0	51	23	38	2	35	1.68
48892266--48892369	48	2.2	48	98	0	199	50	0	26	23	1.50
48895063--48895107	2	22.5	2	100	0	90	51	0	48	0	1.00
48898816--48900166	282	4.9	282	85	5	1711	33	18	22	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48898801--48900000	540	2.2	548	85	4	1623	33	18	22	25	1.96
48902663--48902703	5	8.6	5	78	10	50	21	2	2	73	1.07
48902676--48902716	18	2.2	18	87	12	57	26	2	4	65	1.25
48906926--48906991	31	2.1	31	85	0	87	42	12	13	31	1.81
48908792--48908841	25	2.0	25	92	7	84	28	12	4	56	1.54
48910142--48910264	59	2.1	58	84	6	158	49	8	16	26	1.73
48913150--48913262	58	1.9	60	82	10	144	45	1	3	49	1.29
48916658--48916682	12	2.1	12	100	0	50	44	0	8	48	1.32
48917789--48917979	36	5.0	36	83	12	238	36	13	20	29	1.91
48917753--48917979	82	2.9	82	88	6	321	36	12	21	29	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240