genome.fa.s24.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  127  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39486054--39486327	85	3.2	85	69	11	248	32	17	21	28	1.96
39486352--39486536	44	4.2	43	84	2	201	31	22	20	24	1.98
39486175--39487256	263	4.1	263	74	8	1021	32	18	20	27	1.96
39486369--39486541	88	2.0	89	84	1	231	32	21	20	25	1.97
39486369--39486575	88	2.3	88	79	2	227	34	19	20	26	1.96
39486175--39486763	307	1.9	307	84	2	788	33	19	19	27	1.96
39486433--39487464	482	2.1	482	87	1	1503	33	18	19	27	1.96
39486492--39486979	219	2.2	218	80	3	557	34	17	20	28	1.95
39486930--39487026	44	2.2	44	88	0	149	31	21	22	23	1.98
39486959--39487582	219	2.8	219	89	0	953	32	18	19	28	1.96
39487398--39487763	175	2.1	175	90	0	561	30	20	20	28	1.98
39487450--39487729	85	3.2	85	70	10	260	31	19	20	28	1.97
39487179--39489158	394	5.0	394	72	9	1544	32	18	19	28	1.96
39487398--39487820	175	2.4	174	86	2	544	30	20	21	27	1.98
39487791--39487930	44	3.2	44	86	0	199	35	22	17	24	1.96
39487577--39488646	263	4.1	263	73	9	985	32	19	20	27	1.97
39487884--39489599	219	7.8	218	78	8	1377	33	17	19	29	1.95
39488316--39488411	44	2.2	44	90	0	147	36	22	16	23	1.94
39488331--39488433	44	2.3	44	93	0	170	33	21	22	23	1.98
39487850--39488787	482	1.9	481	90	2	1470	33	18	20	27	1.96
39488628--39488910	85	3.3	84	68	17	245	33	15	20	30	1.94
39488592--39488916	175	1.9	175	92	2	546	33	16	20	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39488601--39488957	175	2.0	175	85	6	467	33	16	20	29	1.95
39488360--39490061	832	2.0	833	89	2	2605	33	17	19	28	1.95
39489412--39489775	175	2.1	175	91	1	588	32	17	19	30	1.95
39489193--39491190	394	5.0	393	75	9	1656	33	18	20	28	1.96
39489424--39489832	175	2.3	175	87	3	538	33	17	20	29	1.95
39489782--39490369	44	13.4	44	69	10	127	33	18	21	27	1.96
39489587--39490058	219	2.2	219	87	3	655	33	18	20	28	1.96
39489806--39490171	175	2.1	175	90	0	561	32	18	20	28	1.96
39489858--39490137	85	3.2	85	68	10	251	32	17	21	28	1.96
39489806--39490228	175	2.4	174	86	3	537	32	18	21	27	1.96
39490199--39490364	44	3.8	44	87	0	197	33	20	18	27	1.96
39489995--39490525	275	2.0	269	79	10	577	33	17	20	28	1.96
39490707--39490847	44	3.2	44	88	2	212	31	21	21	25	1.98
39490384--39490803	218	1.9	217	80	6	483	32	18	20	28	1.96
39489981--39490876	493	1.8	494	91	1	1494	32	18	20	27	1.96
39490474--39491077	306	2.0	307	84	2	804	33	18	20	27	1.96
39490691--39490878	88	2.1	88	81	5	220	33	19	20	26	1.96
39490780--39491285	219	2.3	219	83	2	651	33	18	19	28	1.96
39491218--39491339	44	2.8	44	88	0	181	31	21	20	26	1.98
39490736--39491767	482	2.1	482	90	1	1622	33	18	19	28	1.96
39490480--39491548	263	4.1	263	73	10	998	33	18	20	27	1.96
39491268--39491888	219	2.8	217	88	3	933	33	18	19	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39491701--39492067	175	2.1	175	91	2	603	32	19	19	28	1.96
39491262--39491953	219	3.2	219	86	3	923	33	18	19	28	1.96
39490736--39491907	482	2.4	480	86	3	1358	33	18	20	28	1.96
39491481--39492454	394	2.5	393	90	1	1497	32	18	19	29	1.96
39491701--39492128	175	2.4	175	88	3	578	32	18	19	28	1.96
39492098--39492425	175	1.9	173	89	1	512	32	17	20	29	1.96
39491880--39492347	219	2.1	219	84	3	611	32	18	19	29	1.96
39491701--39492423	44	16.6	42	66	13	195	32	18	19	29	1.96
39492471--39492609	50	2.8	50	83	4	174	34	24	17	23	1.96
39494073--39494104	13	2.5	13	95	5	57	34	0	6	59	1.23
39494445--39494479	19	1.9	19	88	11	56	45	0	5	48	1.26
39502899--39502930	16	2.0	16	93	0	55	46	6	9	37	1.61
39506074--39506154	40	2.0	40	100	0	162	22	14	9	53	1.71
39513349--39513469	50	2.4	50	80	0	134	28	23	27	19	1.99
39524463--39524537	33	2.2	34	90	2	116	42	12	6	38	1.68
39544054--39544412	47	7.6	47	91	2	540	28	29	8	32	1.87
39544054--39544419	96	3.9	94	87	6	474	29	29	8	32	1.86
39552187--39552244	27	2.1	27	90	0	89	27	8	29	34	1.87
39556210--39556242	17	1.9	17	93	0	57	21	12	9	57	1.62
39558506--39559235	27	27.1	27	82	0	710	42	20	19	17	1.89
39559472--39559522	26	2.0	26	92	0	84	17	21	21	39	1.93
39559626--39559751	28	4.4	28	80	7	135	24	23	23	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39567206--39567751	47	11.6	47	94	0	939	32	8	29	29	1.87
39569174--39569246	23	3.4	23	62	21	59	23	23	28	24	1.99
39569166--39569677	40	12.8	40	91	0	763	23	21	28	26	1.99
39572781--39573232	47	9.6	47	94	0	760	32	8	29	29	1.87
39587780--39588188	204	2.0	204	100	0	818	32	19	26	21	1.97
39588561--39588841	142	2.0	142	100	0	562	45	10	17	26	1.81
39588921--39588961	22	1.9	21	95	5	73	41	17	7	34	1.77
39598421--39598630	41	5.3	40	73	13	132	34	16	28	21	1.95
39598523--39598585	33	1.9	33	86	0	90	34	9	30	25	1.88
39598478--39598616	74	1.9	74	83	3	181	31	15	28	24	1.95
39598556--39598642	41	2.1	41	85	4	113	31	16	27	25	1.96
39599493--39599523	16	1.9	16	93	0	53	41	9	9	38	1.71
39599744--39599910	51	3.3	48	74	8	163	23	17	26	31	1.97
39600147--39600178	16	2.0	16	93	0	55	59	0	15	25	1.36
39606190--39606221	16	2.0	16	93	0	55	59	0	15	25	1.36
39610455--39610689	28	8.6	27	95	1	380	26	13	28	31	1.94
39610455--39610689	55	4.3	54	93	2	380	26	13	28	31	1.94
39621959--39622031	34	2.1	34	87	0	101	34	30	4	31	1.77
39626629--39626663	17	2.1	17	100	0	70	51	5	17	25	1.67
39627963--39628007	22	2.0	23	82	4	56	33	13	26	26	1.93
39632480--39632525	16	2.7	17	86	6	58	36	2	13	47	1.54
39654500--39654569	3	23.3	3	100	0	140	67	0	32	0	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39657087--39657126	11	3.7	11	90	3	64	7	37	0	55	1.29
39657096--39657132	11	2.9	13	84	15	51	8	37	0	54	1.30
39658291--39658580	145	2.0	144	89	2	438	44	3	30	22	1.70
39658493--39659119	316	2.0	316	93	0	1076	29	18	19	32	1.96
39668139--39668183	22	1.9	25	86	13	69	55	8	0	35	1.31
39698292--39698331	21	1.9	21	84	0	53	45	30	12	12	1.79
39713178--39713258	32	2.5	32	81	0	90	32	7	22	38	1.82
39715206--39715266	31	2.0	31	100	0	122	42	14	9	32	1.79
39722980--39723018	18	2.1	19	85	9	53	41	0	15	43	1.46
39736366--39736390	11	2.3	11	100	0	50	16	16	0	68	1.22
39737509--39737551	20	2.2	20	87	4	61	34	4	6	53	1.49
39737513--39737559	19	2.4	19	83	13	60	36	4	6	53	1.46
39745297--39745375	37	2.1	37	90	0	122	25	31	18	24	1.98
39745493--39745974	47	10.2	47	91	3	752	29	30	8	31	1.87
39745493--39745974	96	5.1	94	90	3	743	29	30	8	31	1.87
39745690--39745762	23	3.2	23	63	18	62	31	31	5	31	1.80
39745711--39745784	22	3.3	22	65	10	60	29	31	9	29	1.89
39752448--39752799	44	7.5	45	68	16	180	33	19	20	26	1.97
39752575--39752765	98	1.9	98	82	4	233	31	19	21	26	1.98
39752395--39752818	142	3.0	142	93	0	715	33	19	20	25	1.97
39753214--39753247	17	1.9	17	88	5	50	29	38	11	20	1.88
39754635--39754677	20	2.2	20	87	4	61	34	6	6	51	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39754639--39754685	19	2.4	19	83	13	60	36	6	6	51	1.53
39760417--39760626	27	7.8	27	84	2	224	30	28	12	29	1.93
39760395--39760626	54	4.3	54	85	1	259	31	27	12	28	1.92
39760417--39760626	81	2.6	81	86	1	287	30	28	12	29	1.93
39764861--39764903	16	2.7	16	88	0	68	11	25	6	55	1.60
39766109--39766160	24	2.2	24	100	0	104	38	9	7	44	1.66
39769042--39769082	17	2.4	17	84	8	57	46	7	21	24	1.77
39786855--39786927	32	2.3	32	88	2	103	32	2	4	60	1.30
39786871--39786922	16	3.2	16	71	10	52	36	1	3	57	1.28
39787729--39787768	20	2.0	20	100	0	80	15	20	20	45	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240