genome.fa.s24.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  110  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34195731--34196058	174	1.9	174	96	0	602	30	24	14	29	1.95
34196011--34196089	29	2.7	30	82	13	110	30	30	13	25	1.94
34203972--34204039	29	2.3	29	85	5	93	27	30	13	27	1.94
34203861--34204188	174	1.9	174	96	0	602	30	24	14	29	1.95
34204141--34204219	29	2.7	30	82	13	110	30	30	13	25	1.94
34219420--34219461	21	2.0	21	86	9	59	54	14	2	28	1.52
34221018--34221048	16	2.0	16	93	6	55	25	16	0	58	1.38
34221272--34221461	51	3.8	50	77	10	199	31	26	16	24	1.97
34221274--34221457	100	1.8	102	87	4	275	31	26	17	25	1.97
34242495--34242522	12	2.3	12	100	0	56	50	0	0	50	1.00
34252465--34252497	9	3.7	9	88	11	50	72	0	0	27	0.85
34252472--34252496	10	2.5	10	100	0	50	76	0	0	24	0.80
34252613--34252652	20	2.1	20	86	9	57	57	2	0	40	1.12
34253272--34253313	21	2.0	21	86	9	59	35	2	0	61	1.09
34253345--34253379	10	3.4	10	88	4	52	57	2	0	40	1.14
34254200--34254258	30	2.0	30	83	6	75	38	0	40	20	1.53
34254474--34254510	9	4.1	9	85	0	56	32	10	10	45	1.74
34254735--34254790	25	2.4	24	82	11	71	32	0	5	62	1.18
34255985--34256024	16	2.5	16	80	12	55	45	0	0	55	0.99
34256010--34256045	19	1.9	19	94	5	65	61	0	0	38	0.96
34257277--34257303	5	5.4	5	100	0	54	40	0	0	59	0.98
34258924--34259075	22	7.0	22	78	5	105	41	16	24	17	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34260068--34260123	20	2.8	18	81	13	58	44	12	0	42	1.42
34271953--34272251	149	2.0	149	95	0	535	29	17	15	37	1.91
34276391--34276430	17	2.3	18	86	4	55	42	0	5	52	1.23
34276513--34276561	21	2.3	22	89	3	73	30	0	2	67	1.02
34277178--34277214	6	6.2	6	93	0	56	83	0	16	0	0.64
34277171--34277212	21	2.0	21	86	9	59	83	2	14	0	0.75
34278691--34278973	126	2.3	125	88	4	410	30	15	21	32	1.95
34280272--34280514	30	8.2	30	87	2	348	30	0	23	46	1.58
34280272--34280514	59	4.1	60	90	1	348	30	0	23	46	1.58
34280272--34280514	89	2.7	89	93	1	407	30	0	23	46	1.58
34280441--34280485	23	1.9	23	90	4	72	33	0	22	44	1.53
34282356--34282389	15	2.3	15	90	5	52	67	5	0	26	1.13
34282487--34282545	29	2.0	29	93	6	102	59	1	0	38	1.08
34282579--34282629	22	2.3	21	83	9	66	33	0	33	33	1.58
34282582--34282681	52	1.9	52	91	0	164	38	0	32	30	1.58
34282634--34282689	22	2.5	22	97	2	103	41	0	30	28	1.57
34282771--34282923	77	2.0	77	98	0	297	16	28	32	22	1.96
34292447--34292510	33	2.0	32	87	3	92	40	25	7	26	1.82
34292726--34292959	41	5.7	41	98	0	450	26	21	21	29	1.99
34300164--34300227	33	2.0	32	90	3	101	39	25	9	26	1.86
34300442--34300634	41	4.7	41	98	0	368	26	21	21	29	1.99
34302489--34302521	6	5.7	6	85	7	50	30	3	0	66	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34313238--34313273	3	12.0	3	100	0	72	66	33	0	0	0.92
34318791--34318825	18	1.9	18	88	0	52	28	17	11	42	1.83
34335562--34335615	23	2.4	22	75	22	58	24	7	5	62	1.42
34347908--34348082	30	5.8	30	89	1	228	26	48	4	21	1.68
34348573--34348704	25	5.5	23	68	16	65	34	4	3	57	1.34
34348638--34348754	25	4.5	27	70	11	82	33	6	4	55	1.46
34348650--34348788	25	5.5	25	72	12	97	33	6	4	56	1.45
34348647--34348739	26	3.4	28	74	14	77	32	5	4	58	1.40
34348769--34348824	19	2.8	20	75	8	60	32	7	5	55	1.50
34348947--34348980	15	2.3	14	90	10	50	29	0	5	64	1.17
34348947--34348980	8	4.5	8	96	3	54	29	0	5	64	1.17
34348947--34348987	16	2.6	15	88	7	55	29	0	4	65	1.13
34350515--34350550	12	3.0	12	95	0	63	27	25	5	41	1.77
34358851--34359025	71	2.5	70	85	2	219	28	14	22	34	1.93
34359043--34359381	76	4.5	74	86	6	443	32	15	20	31	1.94
34359029--34359381	72	4.7	72	83	9	397	31	15	19	33	1.93
34359534--34359976	72	6.0	72	72	16	246	25	16	23	34	1.96
34359409--34360053	281	2.2	284	83	8	750	26	16	22	34	1.95
34359678--34359963	72	3.9	73	86	5	391	27	18	24	30	1.98
34359895--34360098	81	2.5	82	81	11	229	27	15	21	35	1.94
34360120--34360171	14	3.8	14	82	5	61	17	17	7	57	1.62
34361023--34361184	30	5.4	30	90	1	263	24	50	3	22	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34361021--34361184	60	2.8	60	96	0	294	24	50	3	22	1.63
34361745--34361858	25	4.3	27	71	12	92	33	6	2	57	1.37
34361743--34361858	27	4.2	28	70	11	82	33	6	2	57	1.37
34361747--34361890	25	5.6	25	72	14	87	34	6	2	56	1.41
34361825--34361885	24	2.7	22	89	5	86	34	8	4	52	1.53
34362033--34362081	16	3.0	17	79	8	57	30	2	2	65	1.15
34369770--34369794	7	3.6	7	100	0	50	60	0	0	40	0.97
34370599--34370652	24	2.2	24	87	6	74	50	5	3	40	1.44
34374960--34375011	24	2.2	24	85	0	68	50	7	3	38	1.50
34376112--34376165	25	2.1	26	83	13	67	68	0	7	24	1.15
34376217--34376269	22	2.3	23	78	15	56	58	1	7	32	1.37
34377601--34377670	3	23.7	3	91	2	115	67	0	30	2	1.05
34377729--34377787	21	2.8	21	84	5	75	28	38	11	20	1.88
34380099--34380244	30	4.9	30	78	7	154	28	21	26	23	1.99
34380094--34380244	60	2.6	58	83	6	178	28	22	25	23	1.99
34380349--34380447	26	3.8	26	84	0	126	36	24	20	19	1.95
34380349--34380450	52	2.0	52	86	0	141	37	24	19	18	1.94
34380649--34380982	27	12.3	27	85	2	402	19	17	21	41	1.90
34382936--34382973	20	1.9	20	94	0	67	15	28	13	42	1.85
34386098--34386135	18	2.1	18	100	0	76	28	5	31	34	1.80
34396861--34397046	52	3.6	52	80	9	170	29	15	25	29	1.96
34396927--34397044	50	2.3	51	85	4	150	27	17	27	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34397381--34397420	14	2.9	14	100	0	80	30	5	15	50	1.65
34399256--34399297	21	2.0	21	100	0	84	33	28	19	19	1.96
34399578--34399615	6	6.2	6	82	17	51	18	5	0	76	0.97
34406014--34406075	32	1.9	32	90	0	97	33	9	27	29	1.88
34407351--34407568	89	2.4	89	81	3	260	35	17	19	27	1.94
34407351--34407568	45	4.9	45	85	3	262	35	17	19	27	1.94
34413430--34413654	40	5.7	40	89	5	289	25	20	26	26	1.99
34413430--34413687	80	3.2	80	84	6	251	26	20	26	25	1.99
34413430--34413687	120	2.2	119	80	8	276	26	20	26	25	1.99
34429462--34429848	40	9.7	40	95	0	693	30	20	27	21	1.98
34435004--34435119	50	2.3	50	90	0	178	28	23	25	22	1.99
34439163--34439187	13	1.9	13	100	0	50	44	0	16	40	1.47
34452692--34452731	20	2.0	20	90	4	64	72	2	5	20	1.15
34464306--34464404	27	3.7	25	82	6	99	31	21	13	34	1.91
34465447--34465500	27	2.0	27	92	0	90	20	24	12	42	1.87
34466861--34466998	35	3.9	35	72	3	116	26	26	21	26	1.99
34470159--34470304	65	2.2	65	86	2	204	18	9	28	43	1.81
34473302--34473350	24	2.0	24	100	0	98	24	24	12	38	1.90
34474091--34474291	100	2.0	100	100	0	402	38	10	13	36	1.81
34474914--34474963	7	7.0	7	76	19	50	26	6	2	66	1.26
34475096--34475150	9	6.2	9	74	19	53	32	3	0	63	1.12
34475102--34475150	26	2.0	24	88	8	71	34	4	0	61	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34480964--34481011	17	2.9	16	76	11	53	18	0	4	77	0.93
34480963--34481011	8	5.9	9	75	15	52	18	0	4	77	0.92
34483266--34483340	21	3.7	20	82	7	80	42	18	21	17	1.89
34483283--34483376	21	4.5	21	79	0	98	45	13	20	20	1.84
34486786--34486839	19	3.1	17	82	17	67	66	0	1	31	1.02
34486963--34487010	18	2.5	19	77	16	55	64	4	8	22	1.38
34491000--34491133	18	6.9	18	68	24	76	56	3	0	38	1.22
34491100--34491179	18	3.8	21	74	18	60	50	3	2	43	1.33
34491034--34491278	127	1.9	127	97	0	463	52	4	2	41	1.33
34496708--34496762	23	2.4	22	79	8	56	45	20	18	16	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240