genome.fa.s24.2.7.7.80.10.50.1000.159.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  159  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50089484--50089559	26	3.0	26	86	1	109	40	5	17	36	1.72
50092327--50092574	56	4.5	55	74	12	168	28	17	4	50	1.64
50092361--50092568	28	7.6	27	72	13	95	28	16	3	50	1.62
50092472--50092572	28	3.7	27	77	5	105	28	18	1	50	1.58
50110994--50111036	22	2.0	22	85	0	59	53	2	2	41	1.26
50111146--50111193	26	2.0	22	84	15	60	39	6	14	39	1.71
50112177--50112272	47	2.0	47	100	0	192	16	35	16	31	1.92
50118806--50118837	12	2.6	12	95	5	55	50	0	3	46	1.17
50120123--50120171	16	3.1	16	71	11	55	32	8	14	44	1.74
50124028--50124136	49	2.2	52	83	5	134	29	36	16	17	1.92
50127168--50127375	42	5.0	42	78	8	201	37	24	15	21	1.93
50127168--50127375	84	2.5	84	94	0	362	37	24	15	21	1.93
50134611--50134653	13	3.2	13	87	6	59	62	2	4	30	1.28
50134616--50134654	14	3.0	12	85	10	51	71	2	2	23	1.10
50146723--50146764	18	2.3	18	84	11	59	61	4	2	30	1.29
50146527--50147192	239	2.6	249	80	10	768	45	6	9	38	1.62
50147755--50147927	72	2.4	73	88	0	249	25	23	26	25	2.00
50147654--50148041	186	2.1	185	88	2	584	26	23	25	24	2.00
50147828--50148446	114	5.3	114	81	6	657	26	22	25	26	2.00
50148081--50148106	13	2.0	13	100	0	52	61	23	7	7	1.49
50147856--50148331	242	2.0	241	87	1	693	26	22	25	25	2.00
50152001--50152061	16	4.0	16	77	12	74	45	14	0	39	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50152003--50152065	9	7.0	9	71	20	51	46	15	0	38	1.47
50152066--50152119	17	3.1	18	79	17	69	38	0	1	59	1.08
50152074--50152103	15	2.0	15	93	0	51	40	0	3	56	1.16
50152089--50152127	19	2.0	20	95	5	71	43	0	0	56	0.99
50152146--50152255	31	3.4	31	77	13	107	47	19	0	33	1.50
50152243--50152781	9	63.6	9	70	17	309	48	18	1	31	1.57
50152253--50152304	12	4.3	12	80	0	59	50	19	1	28	1.58
50152268--50152492	95	2.4	95	91	3	364	52	18	0	28	1.51
50152360--50152399	12	3.3	12	85	0	53	50	17	0	32	1.47
50152384--50152781	34	11.4	34	72	18	164	47	18	1	32	1.57
50152289--50152781	16	28.8	17	71	17	244	48	18	1	31	1.56
50152452--50152781	50	6.5	49	79	12	305	46	19	1	33	1.58
50152353--50152781	25	17.1	25	78	11	249	47	18	1	32	1.57
50158319--50158367	21	2.3	21	89	0	71	34	18	38	8	1.80
50158778--50158942	43	3.8	43	88	0	240	32	19	23	24	1.97
50158739--50158938	86	2.3	86	85	4	251	33	20	24	23	1.97
50158994--50159036	21	2.0	22	86	4	61	41	27	20	9	1.83
50159666--50159850	34	5.4	34	86	1	235	28	16	25	29	1.97
50159925--50159970	24	1.9	24	95	0	83	34	17	13	34	1.88
50174889--50175146	40	6.6	40	88	5	341	27	28	20	24	1.99
50182178--50182440	40	6.6	40	92	2	361	27	28	20	23	1.99
50182178--50182440	120	2.2	119	89	2	402	27	28	20	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50187308--50187350	20	2.2	20	100	0	86	20	9	11	58	1.61
50190129--50190293	42	4.0	41	84	3	186	26	17	22	33	1.96
50190137--50190293	83	1.9	83	82	2	199	26	15	22	34	1.95
50195941--50195977	7	5.0	7	87	12	56	29	0	16	54	1.43
50195948--50196391	9	50.4	9	76	12	397	33	0	15	50	1.49
50199947--50200199	115	2.2	113	79	6	276	26	22	18	32	1.97
50200237--50200527	113	2.5	113	82	6	311	25	24	19	30	1.98
50201027--50201051	13	1.9	13	100	0	50	40	0	36	24	1.55
50204281--50204322	11	3.7	11	83	3	57	21	33	2	42	1.66
50204281--50204335	22	2.4	23	81	6	67	21	30	3	43	1.70
50205549--50205574	7	3.7	7	100	0	52	26	0	15	57	1.38
50206225--50206264	18	2.2	18	86	0	53	17	30	7	45	1.76
50206734--50207406	23	31.1	22	74	15	468	47	25	0	26	1.56
50206734--50207330	67	8.8	66	74	14	393	48	25	0	25	1.54
50206734--50207406	45	15.6	44	77	13	525	47	25	0	26	1.56
50207038--50207077	7	5.7	7	85	8	55	47	25	0	27	1.52
50207038--50207078	15	2.9	14	82	7	55	48	24	0	26	1.51
50206734--50207406	22	31.1	21	71	16	278	47	25	0	26	1.56
50211827--50211859	15	2.2	15	94	0	57	30	0	21	48	1.50
50215382--50215421	20	2.0	20	95	0	71	30	22	15	32	1.94
50223458--50224127	90	7.5	90	89	1	954	31	18	23	26	1.98
50223458--50224111	179	3.7	179	91	1	990	30	19	23	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50223472--50224169	269	2.6	269	87	2	825	31	18	23	25	1.98
50224111--50224384	132	2.1	132	95	0	494	30	18	24	27	1.98
50224111--50224424	132	2.4	131	90	3	443	30	18	23	27	1.97
50226331--50226360	13	2.3	13	100	0	60	33	0	20	46	1.51
50226385--50226423	14	2.8	14	84	0	51	33	2	7	56	1.41
50226510--50226551	19	2.2	20	82	4	50	30	4	16	47	1.67
50227418--50227795	125	3.0	125	92	0	621	30	24	16	28	1.96
50236242--50236279	18	2.1	18	90	0	58	42	21	15	21	1.89
50236254--50236325	30	2.4	30	100	0	144	26	23	23	26	2.00
50236639--50236699	9	6.8	9	92	0	104	24	9	31	34	1.88
50240917--50240968	22	2.4	20	77	22	52	30	5	3	59	1.39
50244855--50244884	5	6.0	5	100	0	60	40	20	0	40	1.52
50249022--50249073	22	2.4	20	77	22	52	30	5	3	59	1.39
50251199--50251234	19	1.9	19	88	5	56	13	5	8	72	1.27
50254510--50254542	15	2.2	15	100	0	66	54	18	21	6	1.64
50263618--50264610	169	5.9	168	87	1	1353	28	17	27	26	1.98
50264681--50264771	41	2.2	41	90	0	137	23	21	19	35	1.96
50266172--50266265	3	31.3	3	75	16	88	29	5	2	62	1.29
50269505--50269530	13	2.0	13	100	0	52	30	7	0	61	1.24
50271763--50271817	27	2.0	27	100	0	110	36	32	7	23	1.82
50271767--50271824	27	2.1	27	93	0	98	36	32	5	25	1.78
50272288--50272444	82	1.9	81	89	3	244	38	22	13	24	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50273055--50273264	35	6.1	35	87	2	298	19	20	17	42	1.89
50273055--50273264	104	2.0	104	88	5	309	19	20	17	42	1.89
50273053--50273267	69	3.1	69	87	2	315	19	20	16	43	1.88
50294481--50294541	18	3.6	17	76	10	54	70	4	1	22	1.15
50294930--50294969	20	2.0	20	85	0	53	27	0	10	62	1.27
50295122--50295191	31	2.3	31	82	5	79	57	5	15	21	1.59
50297405--50297456	26	2.0	26	100	0	104	30	7	34	26	1.85
50298206--50298307	51	2.0	51	94	0	177	51	1	1	44	1.23
50298268--50298330	32	2.0	31	84	3	81	38	1	3	57	1.24
50300407--50300443	16	2.4	16	83	16	51	21	0	0	78	0.75
50304709--50304788	42	1.9	42	84	5	108	35	13	23	27	1.93
50305851--50306165	44	7.2	44	65	7	172	26	29	23	20	1.99
50305837--50306231	44	9.0	45	63	10	152	27	27	24	20	1.99
50305837--50306236	88	4.5	88	93	0	674	27	27	24	20	1.99
50306247--50306510	44	6.3	44	78	8	246	27	18	24	29	1.98
50306248--50306485	126	1.9	126	92	0	404	27	18	25	28	1.98
50306331--50306487	82	1.9	82	90	0	251	28	17	26	27	1.98
50306582--50306696	45	2.6	45	83	4	126	26	19	24	29	1.98
50307176--50307367	58	3.3	58	96	1	341	31	17	24	26	1.97
50310732--50310787	29	1.9	29	85	7	78	42	10	12	33	1.77
50312026--50312244	121	1.9	117	85	8	311	27	9	15	47	1.77
50313576--50313724	69	2.2	69	91	0	235	49	17	7	25	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50313834--50314283	161	2.8	158	78	6	489	32	13	16	37	1.88
50316487--50316605	54	2.2	54	80	0	121	22	49	3	24	1.65
50319084--50319117	17	1.9	18	88	5	52	26	2	0	70	1.01
50325730--50325785	26	2.2	26	80	6	60	50	14	10	25	1.75
50332712--50332737	13	2.0	13	100	0	52	61	7	15	15	1.55
50334163--50334190	6	4.7	6	100	0	56	71	0	14	14	1.15
50335120--50335175	28	2.0	28	100	0	112	53	10	10	25	1.67
50337303--50337380	39	1.9	40	87	10	113	32	6	7	53	1.55
50337914--50338325	109	3.8	109	86	2	562	31	16	17	34	1.93
50342227--50342320	25	3.8	24	81	8	100	80	3	15	0	0.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240