genome.fa.s24.2.7.7.80.10.50.1000.187.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  187  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57477688--57477745	21	2.8	20	82	7	71	43	18	3	34	1.68
57477742--57477787	7	6.6	7	78	16	51	60	10	0	28	1.30
57477783--57477859	21	3.7	21	79	10	68	44	20	2	32	1.66
57477841--57478341	9	58.3	9	66	19	180	46	18	2	32	1.62
57477853--57477918	25	2.6	25	81	9	89	46	19	1	31	1.59
57477841--57477959	41	2.9	40	83	6	139	47	17	1	32	1.58
57477896--57478063	34	4.7	34	68	12	88	48	17	2	31	1.60
57477887--57478339	16	27.0	16	65	20	121	46	18	2	32	1.62
57478074--57478287	34	6.3	34	75	10	188	44	20	3	31	1.67
57478075--57478275	69	2.9	69	91	2	307	43	20	3	31	1.69
57478231--57478312	25	3.3	25	85	0	110	47	14	2	35	1.58
57482066--57482215	66	2.3	66	87	2	212	40	18	26	16	1.90
57482218--57482276	21	2.8	21	87	5	84	33	16	44	5	1.70
57482624--57482909	43	6.7	42	82	4	313	19	19	31	29	1.97
57488501--57488547	21	2.2	21	88	0	67	36	12	46	4	1.62
57489789--57489847	30	2.0	30	93	0	100	27	23	18	30	1.98
57490303--57490656	182	1.9	182	81	6	430	35	15	21	27	1.94
57490493--57491055	114	4.9	114	76	11	431	31	19	21	27	1.97
57490490--57491055	229	2.5	226	80	7	586	31	18	21	27	1.97
57491380--57491445	22	3.0	21	80	6	69	12	0	43	43	1.41
57491397--57491436	15	2.7	15	88	3	55	15	0	40	45	1.46
57493001--57493029	14	2.1	14	93	6	51	62	0	6	31	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57493292--57493336	22	2.0	24	86	8	67	60	4	4	31	1.37
57493317--57493360	17	2.4	18	81	7	54	61	0	4	34	1.16
57494070--57494105	15	2.4	15	90	9	56	5	13	5	75	1.17
57494599--57494683	44	1.9	44	81	13	104	31	25	20	22	1.98
57495159--57495430	45	6.1	45	69	11	186	22	23	26	27	2.00
57495151--57495433	89	3.2	89	92	0	449	22	23	27	26	2.00
57495245--57495384	44	3.2	44	69	6	147	22	21	28	27	1.99
57497181--57497217	10	3.6	10	89	7	56	0	10	5	83	0.79
57497164--57497195	16	1.9	17	93	6	57	3	6	6	84	0.86
57499499--57499535	19	1.9	19	94	0	65	32	18	18	29	1.96
57501553--57501587	18	2.0	17	88	5	52	45	0	0	54	0.99
57501446--57501729	120	2.4	120	90	2	446	44	1	4	48	1.34
57501673--57501707	18	2.0	17	88	5	52	45	0	0	54	0.99
57501673--57501727	15	3.4	16	80	16	53	47	0	1	50	1.11
57501943--57502010	16	4.2	16	96	0	127	38	35	0	26	1.57
57502256--57502291	15	2.4	15	90	9	56	5	13	5	75	1.17
57502928--57503018	44	2.1	44	91	0	146	25	30	9	34	1.88
57504653--57504733	35	2.3	35	95	0	144	33	4	3	58	1.37
57504751--57504806	16	3.3	17	80	9	78	37	16	3	42	1.65
57504756--57504828	34	2.3	33	86	11	100	41	16	2	39	1.63
57504898--57505098	22	9.3	22	65	23	65	48	18	1	31	1.59
57505029--57505083	12	4.8	12	84	4	69	52	14	1	30	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57505022--57505090	24	3.0	24	83	8	83	53	15	1	28	1.51
57505074--57505495	95	4.5	95	91	5	684	50	19	2	27	1.59
57505415--57505454	12	3.3	12	100	0	80	52	15	0	32	1.43
57505515--57505580	19	3.6	19	78	19	86	50	18	1	30	1.56
57505046--57505580	181	2.9	186	79	9	601	50	18	2	27	1.60
57505515--57505652	9	15.8	9	76	17	114	47	21	1	30	1.60
57505545--57505652	16	6.9	16	75	17	86	47	21	1	29	1.61
57505549--57505652	25	4.1	25	81	4	136	46	22	1	29	1.63
57507667--57507692	12	2.2	12	100	0	52	7	15	30	46	1.74
57507830--57507946	41	2.8	41	89	3	164	22	22	29	26	1.99
57508293--57508327	15	2.4	15	90	4	54	20	0	40	40	1.52
57508338--57508401	23	2.8	23	83	4	85	23	1	40	34	1.64
57508338--57508400	7	8.2	8	77	11	53	22	1	41	34	1.63
57508626--57508663	14	2.7	15	88	12	62	28	0	28	42	1.56
57508406--57509143	298	2.4	299	86	5	988	30	2	25	40	1.70
57508913--57508957	14	3.1	14	90	6	72	26	2	40	31	1.68
57508980--57509028	14	3.4	14	81	13	55	22	4	44	28	1.71
57512533--57512573	2	20.5	2	100	0	82	0	51	0	48	1.00
57513901--57514237	43	7.8	43	83	1	388	24	19	29	26	1.99
57517824--57517877	21	2.6	21	90	0	81	37	20	38	3	1.70
57517866--57517904	12	3.2	12	81	0	51	41	12	38	7	1.72
57518396--57518494	42	2.3	42	84	1	117	26	19	24	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57521564--57521618	19	2.8	19	77	5	65	49	3	0	47	1.19
57523241--57523277	17	2.1	17	90	5	56	72	2	0	24	0.97
57531791--57531853	26	2.4	27	97	2	119	41	9	0	49	1.35
57531913--57532012	27	3.7	27	80	7	114	25	25	33	17	1.96
57532096--57532135	11	3.7	11	83	6	55	70	2	27	0	1.01
57532095--57532133	21	1.9	20	89	5	60	69	2	28	0	1.02
57532264--57532304	3	13.7	3	100	0	82	0	0	31	68	0.90
57538095--57538150	27	2.1	27	96	0	103	8	33	14	42	1.77
57538861--57539023	40	4.1	40	73	17	126	0	30	0	69	0.89
57538898--57539059	32	4.9	32	73	18	111	0	32	0	66	0.96
57538860--57539023	72	2.2	73	89	8	246	0	31	0	68	0.89
57538920--57539051	10	13.6	10	71	18	68	0	33	0	65	0.98
57539004--57539056	26	2.0	27	88	7	81	1	35	0	62	1.06
57539095--57539162	27	2.5	27	97	0	127	17	25	29	27	1.97
57539232--57539294	28	2.4	27	92	7	103	47	0	11	41	1.39
57547600--57547651	24	2.2	24	89	0	77	53	7	3	34	1.48
57552576--57552627	24	2.1	24	89	7	77	48	5	5	40	1.51
57553671--57553931	103	2.6	101	77	7	242	26	22	17	33	1.96
57555034--57555067	10	3.4	10	83	0	50	47	2	2	47	1.32
57555588--57555627	21	1.9	21	84	0	53	32	5	12	50	1.62
57560639--57560683	24	1.9	24	90	4	74	15	11	11	62	1.55
57565078--57565125	26	1.9	26	84	16	66	35	12	16	35	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57565078--57565125	25	1.9	24	87	8	69	35	12	16	35	1.87
57574755--57575055	163	1.9	157	80	8	345	31	16	11	41	1.83
57588152--57588186	18	1.9	18	88	0	52	31	0	2	65	1.07
57588639--57588688	24	2.1	24	84	0	64	48	10	6	36	1.61
57593659--57593715	24	2.4	24	85	5	71	47	10	5	36	1.61
57593671--57593722	24	2.2	24	85	0	68	50	7	3	38	1.50
57602146--57602207	11	5.1	11	75	24	54	82	6	11	0	0.84
57606495--57606582	27	3.5	25	80	12	83	34	18	27	20	1.96
57606534--57606594	27	2.3	27	88	5	90	34	18	24	22	1.96
57606518--57606601	25	3.3	27	78	17	81	33	17	25	23	1.97
57618427--57618473	6	7.7	6	84	11	51	0	78	2	19	0.85
57629568--57629615	23	2.1	22	88	3	69	14	4	2	79	0.98
57629665--57629707	21	2.0	22	90	4	70	9	27	6	55	1.57
57631490--57631514	10	2.5	10	100	0	50	68	0	8	24	1.16
57635898--57636014	42	2.8	42	79	7	121	31	26	16	25	1.96
57635898--57636104	44	4.8	43	76	12	192	30	27	17	24	1.97
57638174--57638256	42	2.0	43	83	9	109	31	25	15	27	1.96
57641595--57641641	22	2.1	23	84	7	62	25	2	48	23	1.62
57641971--57642285	106	3.0	106	94	1	535	29	12	11	46	1.76
57642072--57642616	251	2.1	251	92	4	889	28	13	11	46	1.78
57642322--57642525	107	1.9	107	93	0	354	29	10	10	49	1.72
57642719--57642757	15	2.7	15	84	11	55	23	0	5	71	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57643323--57643379	7	7.9	7	76	3	51	35	45	0	19	1.50
57643348--57643382	8	4.5	8	85	7	54	40	48	0	11	1.39
57643334--57643382	23	2.2	22	89	10	73	38	46	0	14	1.44
57643402--57643443	14	2.9	14	82	6	57	35	35	0	28	1.58
57643398--57643444	15	3.3	15	82	8	62	40	31	0	27	1.57
57643676--57643706	15	2.1	15	93	0	53	35	45	0	19	1.51
57643954--57644171	114	1.9	114	93	1	375	24	29	22	22	1.99
57644144--57644358	114	1.9	114	91	1	351	26	28	22	22	1.99
57644071--57644244	73	2.4	73	91	1	269	25	27	22	24	2.00
57643951--57644545	187	3.2	187	96	0	1048	25	27	22	24	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240