genome.fa.s24.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  104  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32095337--32095403	9	7.4	9	77	9	66	26	10	20	41	1.85
32095337--32095405	27	2.6	27	90	0	102	26	10	20	43	1.83
32097709--32097765	17	3.5	17	66	9	55	49	8	1	40	1.44
32097703--32097772	32	2.4	30	86	13	94	47	7	4	41	1.50
32098816--32098892	14	5.0	15	71	20	52	42	14	9	33	1.77
32098832--32098871	20	2.0	20	90	0	62	50	12	10	27	1.72
32098820--32098886	34	1.9	35	90	3	109	46	13	8	31	1.74
32102117--32102249	73	1.9	71	84	9	184	35	12	2	49	1.53
32102696--32102731	14	2.6	14	95	0	63	33	11	50	5	1.61
32106287--32106369	43	1.9	43	95	0	148	42	13	9	34	1.77
32106618--32106669	24	2.1	24	85	3	68	36	25	26	11	1.90
32109673--32109723	22	2.3	23	83	10	61	35	1	5	56	1.35
32110362--32110409	24	2.0	25	88	12	73	41	14	8	35	1.76
32117452--32117493	18	2.5	16	82	17	50	42	4	2	50	1.36
32118978--32119026	14	3.3	15	78	18	50	61	2	0	36	1.08
32119686--32119729	17	2.8	16	82	6	54	65	2	0	31	1.05
32119677--32119725	23	2.1	24	85	11	66	65	2	0	32	1.04
32119677--32119723	24	2.0	24	87	8	69	65	2	0	31	1.04
32122497--32122719	42	5.2	42	87	3	293	30	20	22	26	1.98
32122505--32122716	86	2.5	86	89	2	320	32	19	21	25	1.97
32122710--32122749	16	2.7	14	82	14	53	15	20	30	35	1.93
32122721--32122753	16	2.1	16	100	0	66	12	24	30	33	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32122744--32122840	42	2.3	43	85	7	135	27	21	26	23	1.99
32123287--32123334	21	2.3	21	92	0	78	2	41	18	37	1.63
32129751--32129990	41	5.9	40	75	4	221	35	23	24	17	1.95
32129790--32129989	82	2.4	82	88	0	292	35	24	24	16	1.95
32129751--32129988	123	1.9	123	83	1	307	35	23	23	16	1.95
32130740--32130952	114	1.9	113	85	4	295	23	23	26	25	2.00
32130848--32131013	73	2.3	74	93	3	282	22	24	25	26	2.00
32133301--32133430	66	2.0	66	85	0	179	44	17	21	16	1.86
32133801--32133959	43	3.7	42	81	4	176	32	18	26	22	1.97
32133801--32133959	86	1.9	85	84	9	216	32	18	26	22	1.97
32134480--32134559	29	2.8	29	79	7	81	58	0	5	36	1.20
32134553--32134685	9	14.0	9	69	17	56	60	0	8	30	1.31
32134863--32134925	19	3.2	20	70	20	62	31	1	3	63	1.19
32134863--32134972	10	11.1	10	69	14	59	30	1	4	63	1.24
32134863--32135027	9	17.2	9	67	15	64	30	2	4	63	1.27
32142007--32142038	16	2.1	16	94	5	57	6	12	0	81	0.87
32145180--32145222	19	2.3	18	84	15	52	20	23	13	41	1.88
32147048--32147097	9	5.6	9	86	9	75	78	10	0	12	0.98
32147061--32147097	17	2.2	17	100	0	74	78	10	0	10	0.97
32148061--32148107	21	2.2	21	92	0	76	27	10	36	25	1.89
32149161--32149790	46	13.7	46	92	0	1035	27	17	27	28	1.98
32149802--32151166	132	10.3	132	94	0	2253	32	18	22	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32152731--32152825	47	2.0	47	82	14	113	33	9	3	53	1.49
32157533--32157579	24	2.0	24	87	8	69	38	36	6	19	1.77
32163777--32163863	25	3.5	25	90	0	129	32	24	20	22	1.98
32163777--32163902	25	5.0	25	83	0	108	34	20	21	23	1.97
32166792--32166838	17	2.7	18	76	6	51	53	2	4	40	1.32
32167646--32168106	140	3.3	139	83	3	531	34	20	9	36	1.84
32168182--32168226	22	2.1	22	87	4	65	66	4	0	28	1.11
32171941--32172166	77	2.8	77	82	8	224	47	13	10	28	1.76
32172021--32172464	81	5.3	81	83	4	460	45	12	12	28	1.79
32172330--32172592	88	3.0	87	78	9	275	44	10	12	32	1.77
32172683--32172733	22	2.3	22	80	6	59	66	1	0	31	1.03
32173175--32173215	20	2.0	20	85	0	55	51	7	9	31	1.62
32175791--32175889	25	4.0	25	81	0	108	21	29	15	34	1.94
32193100--32193293	69	2.8	69	80	5	205	33	16	20	29	1.94
32200210--32200234	13	1.9	13	100	0	50	40	16	16	28	1.89
32201176--32201325	82	1.9	80	81	2	183	34	19	10	36	1.85
32203712--32203802	25	3.8	25	81	8	107	17	21	19	40	1.91
32208298--32208323	6	4.3	6	100	0	52	65	19	15	0	1.27
32209363--32209395	16	2.0	17	94	5	59	24	0	3	72	0.98
32217675--32217723	6	7.6	7	82	17	54	71	0	2	26	0.97
32217674--32217723	20	2.6	20	90	6	77	70	0	4	26	1.05
32217676--32217724	12	3.9	12	87	10	71	69	0	2	28	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32221191--32221510	174	1.8	179	85	3	461	22	15	15	45	1.84
32225272--32225369	48	2.0	48	100	0	196	29	12	14	43	1.81
32246455--32246489	18	1.9	18	100	0	70	34	0	25	40	1.56
32254126--32254162	11	2.9	13	88	11	51	64	0	0	35	0.94
32254624--32254739	61	2.0	61	86	8	168	41	4	4	50	1.42
32255175--32255222	17	2.9	17	90	3	71	27	0	18	54	1.44
32256448--32256626	46	3.9	46	86	1	216	37	10	24	27	1.87
32256448--32256625	92	1.9	92	87	0	257	38	9	24	28	1.86
32263843--32263882	3	13.3	3	100	0	80	67	0	32	0	0.91
32270308--32270492	48	3.9	48	86	0	235	22	29	21	27	1.99
32277260--32277286	3	9.0	3	100	0	54	33	0	0	66	0.92
32277392--32277426	14	2.5	14	90	0	52	48	0	14	37	1.44
32277598--32277666	21	3.5	20	76	9	61	34	7	4	53	1.48
32279491--32279587	49	2.0	49	91	0	158	43	7	25	23	1.79
32302828--32302879	21	2.4	21	83	3	59	30	25	28	15	1.96
32302973--32303027	21	2.6	21	78	18	60	20	23	32	23	1.98
32304283--32304659	205	1.8	204	94	0	673	35	21	5	38	1.76
32305417--32305470	22	2.3	24	84	9	76	37	11	1	50	1.49
32309626--32309673	20	2.6	18	87	12	62	33	8	16	41	1.78
32331754--32331805	21	2.4	21	83	3	59	30	25	28	15	1.96
32331899--32331953	21	2.6	21	78	18	60	20	23	32	23	1.98
32333208--32333584	205	1.8	204	94	0	673	35	21	5	38	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32334344--32334397	22	2.3	24	84	9	76	37	11	1	50	1.49
32338566--32338614	20	2.5	19	87	9	64	32	8	16	42	1.77
32346800--32346892	47	2.0	47	97	0	177	26	32	5	35	1.79
32355679--32355720	20	2.0	20	86	4	57	52	7	4	35	1.50
32360449--32360485	9	4.1	9	85	0	56	27	10	18	43	1.83
32379186--32379258	29	2.6	28	75	10	69	23	19	21	35	1.96
32379454--32379569	53	2.2	53	84	3	153	25	25	13	35	1.93
32380892--32380948	20	2.8	20	76	10	55	70	3	3	22	1.18
32381173--32381210	16	2.5	15	84	16	51	47	0	2	50	1.15
32381345--32381378	17	2.0	17	88	0	50	50	2	0	47	1.16
32381493--32381822	87	3.7	87	80	11	357	37	19	9	33	1.84
32381971--32382043	30	2.5	30	80	10	87	58	0	5	35	1.21
32382057--32382099	20	2.2	20	86	0	59	67	0	6	25	1.15
32382084--32382126	10	4.3	10	84	0	59	65	0	4	30	1.13
32382386--32382526	29	5.0	29	73	17	102	31	2	3	61	1.27
32382405--32382446	20	2.0	21	86	4	59	33	2	2	61	1.21
32382388--32382495	56	1.9	55	82	17	134	31	2	2	62	1.23
32382444--32382515	30	2.4	29	78	17	69	29	4	4	62	1.32
32382653--32382893	89	2.7	86	79	9	268	31	10	21	36	1.87
32382918--32382964	19	2.4	18	83	13	58	27	0	4	68	1.08
32382918--32382973	20	2.9	18	77	15	58	28	0	3	67	1.07
32384849--32385105	46	5.6	46	82	5	274	18	20	15	45	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32400526--32400580	18	2.9	18	76	15	58	30	5	0	63	1.17
32400526--32400580	19	2.8	20	75	8	60	30	5	0	63	1.17
32400756--32400789	17	2.0	17	88	0	50	55	5	2	35	1.39
32415510--32415852	174	2.0	174	99	0	677	42	10	15	31	1.81
32418648--32418695	24	2.0	24	91	0	78	43	10	27	18	1.82
32418823--32418875	21	2.7	20	80	8	63	9	22	24	43	1.83
32421656--32421681	12	2.2	12	100	0	52	73	11	0	15	1.11
32435538--32435614	22	3.4	22	67	19	68	35	2	25	36	1.70
32435533--32435627	46	2.1	46	100	0	190	33	2	23	41	1.66
32440115--32440191	22	3.4	22	65	19	59	36	2	24	36	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240