genome.fa.s24.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  146  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45784656--45784706	12	4.3	12	78	9	52	52	3	25	17	1.61
45803529--45803805	51	5.5	50	71	10	161	27	14	27	30	1.95
45803529--45803805	102	2.7	102	82	5	312	27	14	27	30	1.95
45808019--45808079	25	2.4	25	78	10	70	29	21	21	27	1.98
45808023--45808146	50	2.5	49	82	3	151	29	21	24	24	1.99
45808039--45808146	25	4.4	25	75	11	89	30	21	24	24	1.99
45808087--45808155	24	2.8	25	75	14	72	31	24	24	18	1.98
45814002--45814046	23	2.0	22	91	4	72	33	28	13	24	1.93
45827254--45827296	21	2.0	21	100	0	86	48	13	0	37	1.43
45830537--45830757	27	8.3	27	83	4	250	44	22	14	18	1.86
45830537--45830757	81	2.8	81	84	1	293	44	22	14	18	1.86
45830537--45830783	81	3.1	79	76	9	234	43	21	15	19	1.87
45830921--45831027	26	4.1	26	88	0	133	19	18	23	38	1.93
45830921--45831027	52	2.1	52	87	0	151	19	18	23	38	1.93
45831137--45831194	28	2.1	27	90	3	89	24	25	24	25	2.00
45843673--45843769	43	2.3	43	87	0	131	25	25	19	28	1.99
45845409--45845633	40	5.7	40	84	5	260	25	27	21	24	1.99
45845409--45845633	79	2.8	79	81	6	231	25	27	21	24	1.99
45845411--45845633	119	1.9	120	82	6	283	25	27	21	25	2.00
45846762--45846881	56	2.1	56	98	0	231	22	23	9	45	1.81
45853344--45853566	40	5.6	40	86	5	274	25	28	21	24	1.99
45853346--45853566	119	1.9	120	83	6	297	24	28	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45854690--45854809	56	2.1	56	98	0	231	22	23	9	45	1.81
45858524--45858558	18	1.9	18	88	11	54	54	25	2	17	1.57
45859937--45860065	39	3.3	39	82	0	141	46	20	4	28	1.70
45870923--45870972	23	2.2	23	82	7	57	44	10	16	30	1.80
45872062--45872122	26	2.3	27	83	16	74	29	0	8	62	1.24
45875556--45875744	70	2.7	70	85	1	254	33	24	20	22	1.97
45875639--45875744	34	3.1	34	72	10	106	31	24	21	22	1.98
45875629--45875727	34	2.8	35	74	10	103	32	26	20	21	1.97
45875804--45875875	36	2.0	36	86	0	99	43	19	5	31	1.74
45893001--45893156	70	2.2	71	88	2	226	35	25	17	21	1.95
45893035--45893147	36	3.2	36	69	14	108	34	25	17	22	1.96
45897900--45897995	33	2.9	33	84	3	122	46	21	18	12	1.82
45899928--45899970	22	2.0	22	90	0	68	37	0	0	62	0.95
45899935--45899967	17	2.0	16	94	5	57	39	0	0	60	0.97
45908849--45908878	11	2.7	11	94	0	51	53	0	0	46	1.00
45909211--45909260	9	5.2	9	77	13	55	54	0	2	44	1.11
45912827--45912888	28	2.1	30	91	5	101	40	1	6	51	1.37
45913530--45913565	18	2.1	18	89	5	56	41	0	25	33	1.55
45913956--45913992	9	4.1	9	92	0	65	45	13	10	29	1.77
45914203--45914262	30	2.0	31	86	3	86	20	40	0	40	1.52
45925963--45925992	13	2.3	13	94	0	51	70	0	20	10	1.16
45927301--45927959	50	13.2	49	68	12	376	34	22	19	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45927290--45927959	100	6.7	100	85	2	837	34	21	19	24	1.97
45928557--45928582	10	2.6	10	100	0	52	11	0	7	80	0.89
45929349--45929405	16	3.4	16	72	15	53	28	1	3	66	1.18
45929464--45929522	22	2.6	22	86	7	75	35	6	1	55	1.36
45929690--45929747	29	2.0	29	96	0	107	27	17	8	46	1.77
45931447--45931501	21	2.7	21	83	5	69	14	23	18	43	1.87
45935335--45935385	25	2.0	26	84	3	68	39	9	11	39	1.75
45935584--45935693	37	3.0	34	75	15	96	53	2	3	40	1.33
45935586--45935692	20	5.8	18	70	22	62	52	2	3	41	1.34
45949359--45949429	29	2.5	28	80	13	76	61	2	0	35	1.10
45949384--45949432	16	2.9	17	80	16	57	61	2	0	36	1.08
45950216--45950279	26	2.4	27	94	5	112	40	10	0	48	1.38
45950474--45950519	23	2.0	23	91	0	74	28	32	10	28	1.91
45951323--45951357	3	11.7	3	100	0	70	0	0	31	68	0.90
45952941--45952977	9	4.1	9	89	0	56	29	8	13	48	1.71
45953462--45953498	18	2.1	18	94	0	65	35	8	45	10	1.69
45957044--45957099	27	2.1	27	89	0	85	8	32	12	46	1.73
45957843--45958001	37	4.3	38	75	15	136	0	32	1	66	1.00
45957886--45958015	4	32.0	4	73	22	53	0	31	0	67	0.96
45957855--45957950	10	9.3	10	70	17	63	0	28	0	71	0.86
45957885--45958014	13	10.2	13	65	26	57	0	30	0	68	0.95
45957855--45958014	41	4.1	41	80	13	187	0	30	0	68	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45957879--45958026	33	4.8	31	76	16	123	0	33	0	66	0.97
45957826--45957988	78	2.2	73	89	6	238	0	29	1	69	0.96
45957969--45958025	27	2.1	27	90	6	89	0	38	0	61	0.96
45957855--45958003	78	1.9	77	90	2	235	0	31	0	67	0.95
45957953--45958007	18	2.9	19	71	15	51	0	36	1	61	1.06
45958145--45958206	24	2.4	25	89	7	90	45	0	11	43	1.40
45958292--45958324	3	11.0	3	100	0	66	33	0	0	66	0.92
45962541--45962734	50	3.8	50	79	9	180	28	21	27	22	1.99
45967214--45967297	35	2.3	36	83	6	98	57	15	0	27	1.39
45967945--45968036	48	1.9	48	84	4	123	19	22	32	25	1.97
45978563--45978915	50	6.8	50	89	2	384	27	20	28	23	1.99
45981652--45981699	16	3.0	16	82	11	55	50	0	8	41	1.33
45985244--45985407	41	4.1	40	84	3	168	21	24	17	36	1.94
45985290--45985409	41	3.0	41	86	1	170	23	23	15	38	1.92
45992131--45992340	41	5.3	41	77	11	127	33	14	29	21	1.94
45992260--45992319	20	3.0	20	66	11	50	33	11	28	26	1.91
45992260--45992323	21	3.1	21	67	13	60	32	12	28	26	1.93
45992274--45992340	20	3.3	20	67	8	55	35	14	29	19	1.92
45992427--45992530	53	2.0	53	94	0	181	34	18	19	27	1.95
45994084--45994189	48	2.3	46	85	3	140	16	12	26	44	1.83
45994102--45994216	48	2.4	48	84	7	128	19	13	22	45	1.84
45998545--45998601	27	2.2	26	83	3	69	17	12	21	49	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46010229--46010270	12	3.7	12	81	18	54	11	16	2	69	1.29
46015489--46015783	43	7.0	43	86	2	377	31	25	20	23	1.98
46016199--46016244	21	2.2	21	88	0	65	2	39	19	39	1.64
46016127--46016293	87	1.9	87	87	4	248	11	29	17	40	1.86
46021835--46021901	29	2.5	28	85	9	86	38	0	14	46	1.45
46021819--46022534	190	3.8	190	91	5	1117	37	0	14	47	1.45
46021967--46022130	31	5.8	27	71	26	119	37	0	14	48	1.43
46021819--46022589	293	2.7	294	87	9	1046	37	0	14	47	1.44
46021897--46022447	9	54.6	10	64	25	86	37	0	14	47	1.44
46021856--46022447	103	5.8	102	78	15	593	37	0	14	47	1.44
46022506--46022538	16	2.1	16	100	0	66	30	0	24	45	1.53
46022433--46022589	81	1.9	81	94	5	282	38	0	14	47	1.45
46023723--46023755	12	2.8	12	90	0	57	54	9	6	30	1.56
46025838--46025889	25	2.0	26	85	3	70	50	21	3	25	1.65
46025946--46025986	13	3.1	14	82	6	50	46	24	7	21	1.77
46027785--46027856	36	2.0	36	94	5	128	13	19	27	38	1.90
46030635--46030819	50	3.6	49	78	7	140	25	24	20	29	1.99
46030635--46030824	56	3.7	49	77	9	159	24	25	20	30	1.99
46033282--46033327	19	2.3	20	89	10	69	34	2	0	63	1.07
46037146--46037288	71	2.0	71	100	0	286	36	16	16	30	1.92
46043272--46043314	22	2.0	22	85	0	59	48	9	9	32	1.67
46046931--46047099	35	4.9	35	80	2	171	17	17	26	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46055086--46055148	21	3.0	21	76	9	74	17	0	3	79	0.86
46055087--46055148	15	3.7	15	73	21	52	16	0	3	80	0.83
46058945--46058991	9	5.2	9	80	10	60	65	0	2	31	1.04
46058933--46058987	27	2.0	28	85	3	76	67	0	3	29	1.08
46058934--46059003	19	3.8	18	77	11	70	65	1	1	31	1.10
46072897--46072950	26	2.0	27	82	10	67	31	12	11	44	1.78
46077258--46077307	20	2.5	20	81	12	66	12	24	6	58	1.56
46077567--46077753	50	3.7	50	89	1	241	21	27	21	28	1.99
46078506--46078530	11	2.3	11	100	0	50	84	8	0	8	0.79
46084389--46084414	12	2.2	12	100	0	52	50	7	0	42	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240