genome.fa.s24.2.7.7.80.10.50.1000.221.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  221  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66702363--66702671	118	2.5	118	88	4	438	44	21	2	31	1.65
66702524--66702669	34	4.3	34	85	0	175	45	21	4	28	1.70
66702654--66702710	21	2.5	23	80	11	64	47	17	0	35	1.48
66711332--66711368	9	4.1	9	92	0	65	29	10	13	45	1.77
66716257--66716281	13	1.9	13	100	0	50	56	0	0	44	0.99
66717435--66717567	51	2.6	51	76	0	140	41	12	6	39	1.68
66720373--66720430	27	2.2	26	81	6	64	27	24	5	43	1.75
66721400--66721435	17	2.1	17	90	10	56	27	0	5	66	1.13
66723095--66723159	32	2.0	32	100	0	130	35	36	12	15	1.85
66725390--66725460	2	36.5	2	73	5	56	49	1	7	42	1.38
66725602--66725646	18	2.5	18	85	0	54	60	0	8	31	1.28
66727611--66727829	51	4.3	51	80	1	233	28	24	16	30	1.96
66727611--66727829	102	2.1	102	88	1	323	28	24	16	30	1.96
66727841--66727941	51	2.0	51	94	0	175	29	24	16	28	1.97
66727714--66727944	123	1.9	123	93	0	399	28	25	16	30	1.97
66745143--66745192	24	2.1	24	88	0	73	22	8	28	42	1.81
66747340--66747395	25	2.4	22	81	16	76	35	3	12	48	1.58
66747348--66747398	25	2.0	25	96	0	93	33	3	13	49	1.61
66749591--66749672	39	2.1	39	97	0	155	40	12	8	39	1.73
66749917--66749966	26	1.9	26	91	0	82	20	8	30	42	1.80
66753732--66753772	21	2.0	21	95	0	73	31	19	26	21	1.97
66760850--66760898	21	2.3	22	79	10	57	20	12	12	55	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66762016--66762071	25	2.4	22	81	16	76	35	3	12	48	1.58
66762024--66762074	25	2.0	25	96	0	93	33	3	13	49	1.61
66767217--66767264	17	2.8	17	90	0	69	27	25	0	47	1.52
66772581--66772610	10	3.0	10	100	0	60	50	10	0	40	1.36
66772612--66773191	295	2.0	295	94	1	1011	29	15	12	43	1.83
66781054--66781110	30	1.9	30	85	0	78	35	21	5	38	1.76
66781442--66781513	4	19.5	4	77	16	75	73	0	26	0	0.83
66781428--66781519	3	29.0	3	76	16	55	70	0	29	0	0.87
66781433--66781516	7	11.6	7	81	13	91	72	0	27	0	0.85
66781441--66781516	15	5.1	15	77	19	79	73	0	26	0	0.83
66781790--66781832	13	3.6	12	79	20	54	79	0	20	0	0.74
66781785--66781837	23	2.3	23	87	9	72	79	0	20	0	0.74
66781784--66781837	19	3.2	18	75	15	53	79	0	20	0	0.73
66781925--66781979	14	3.5	15	79	13	58	25	1	5	67	1.22
66782139--66782180	19	2.2	20	86	4	59	42	9	9	38	1.70
66782161--66782199	16	2.4	17	86	4	53	33	10	7	48	1.66
66782161--66782202	17	2.6	16	88	3	57	30	9	7	52	1.61
66782380--66782680	18	17.2	16	71	19	169	30	13	11	44	1.79
66782377--66782680	36	8.6	34	73	13	190	30	13	11	44	1.79
66782377--66782681	53	5.8	53	71	12	225	30	13	11	44	1.79
66782431--66782681	35	7.1	35	73	12	158	30	13	11	45	1.78
66791099--66791919	160	5.2	158	83	6	916	29	15	18	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66791125--66791918	78	10.1	77	83	8	779	29	15	19	35	1.93
66791125--66791873	241	3.2	237	84	7	902	29	16	19	34	1.94
66792098--66792223	29	4.3	29	75	3	108	31	15	7	45	1.74
66792571--66792657	4	22.8	4	75	19	62	75	0	22	1	0.86
66792564--66792626	11	5.8	11	79	9	76	79	0	19	1	0.82
66792567--66792663	22	4.5	22	80	10	105	76	0	22	1	0.85
66792923--66792973	9	5.4	9	77	15	50	82	1	15	0	0.76
66792899--66792973	17	4.2	16	79	20	71	80	2	17	0	0.84
66792899--66792973	37	2.1	35	85	9	98	80	2	17	0	0.84
66792907--66792974	17	3.8	17	79	11	73	77	2	19	0	0.89
66793286--66793331	19	2.3	20	88	3	67	45	13	8	32	1.73
66793512--66793568	18	3.2	18	73	14	55	40	15	8	35	1.79
66793526--66793828	18	17.2	17	73	14	213	32	12	11	44	1.78
66793523--66793828	35	8.7	35	76	8	255	31	12	11	44	1.78
66793523--66793828	71	4.3	70	78	10	245	31	12	11	44	1.78
66803246--66803302	11	5.3	10	82	15	69	84	1	12	1	0.79
66803246--66803296	19	2.6	18	82	14	57	84	1	11	1	0.79
66803248--66803303	6	10.0	6	77	14	57	82	1	14	1	0.84
66803248--66803308	17	3.6	17	84	8	72	80	1	16	1	0.88
66804281--66804340	24	2.5	25	78	8	70	40	10	21	28	1.85
66804624--66805311	45	15.3	45	87	3	906	27	16	24	31	1.97
66805427--66805592	44	3.8	41	78	7	145	29	19	22	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66805427--66805592	88	1.9	86	80	9	192	29	19	22	27	1.98
66805784--66805867	44	1.9	44	85	4	116	29	21	21	27	1.98
66805943--66806043	43	2.3	43	81	6	116	31	12	28	26	1.93
66806210--66806239	12	2.5	12	94	0	51	60	36	3	0	1.14
66807316--66807365	15	3.3	15	86	5	57	26	6	6	62	1.42
66812415--66812464	17	2.7	20	78	18	70	10	0	44	46	1.37
66817054--66817103	17	2.7	20	78	18	70	10	0	44	46	1.37
66825412--66825443	12	2.8	12	95	4	57	59	0	6	34	1.23
66826705--66826741	19	1.9	19	89	10	58	8	10	24	56	1.60
66827023--66827520	124	4.0	124	80	10	618	22	21	23	32	1.98
66827019--66827553	84	6.4	84	89	4	705	22	21	23	32	1.98
66827518--66827688	44	3.7	44	71	15	128	30	21	16	30	1.96
66827511--66827707	98	2.0	98	88	3	290	29	20	17	31	1.96
66827802--66828434	85	7.3	83	75	10	583	28	22	19	30	1.98
66827709--66828475	172	4.4	172	89	4	1010	28	22	19	30	1.98
66827704--66828518	44	18.8	45	71	12	337	28	22	19	30	1.98
66827704--66828603	131	6.9	131	74	10	611	27	22	19	30	1.98
66828645--66828882	125	1.9	125	85	1	334	24	18	22	35	1.96
66828757--66829032	50	5.6	49	72	10	220	24	19	22	33	1.97
66828758--66829049	99	2.9	100	86	3	383	24	20	21	33	1.97
66829061--66829240	86	2.1	87	85	1	236	25	23	22	29	1.99
66831006--66831044	20	2.0	20	94	0	69	25	48	12	12	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66831918--66831995	3	25.3	3	72	12	52	30	5	3	60	1.36
66832396--66832444	15	3.2	15	77	11	55	28	6	0	65	1.16
66833221--66833245	13	1.9	13	100	0	50	56	0	0	44	0.99
66836623--66836680	27	2.2	26	81	6	64	27	24	5	43	1.75
66837641--66837676	17	2.1	17	90	10	56	27	0	5	66	1.13
66839340--66839404	32	2.0	32	100	0	130	35	36	12	15	1.85
66841506--66841555	17	2.7	20	78	18	70	10	0	44	46	1.37
66846145--66846194	17	2.7	20	78	18	70	10	0	44	46	1.37
66846696--66846803	41	2.6	40	78	15	121	51	0	8	38	1.38
66846743--66846815	2	37.5	2	73	5	60	49	1	6	42	1.38
66846701--66846796	37	2.5	39	78	6	99	51	1	9	38	1.41
66847826--66847854	5	5.8	5	100	0	58	82	0	0	17	0.66
66848966--66849184	51	4.3	51	76	0	204	27	26	16	29	1.97
66848940--66849184	102	2.4	102	88	0	337	28	24	17	29	1.97
66849196--66849296	51	2.0	51	94	0	175	29	24	16	28	1.97
66849069--66849299	123	1.9	123	90	0	372	28	25	16	29	1.96
66859898--66859955	27	2.2	27	84	6	75	25	25	5	43	1.75
66866938--66866987	24	2.1	24	88	0	73	22	8	28	42	1.81
66869528--66869609	39	2.1	39	97	0	155	40	12	8	39	1.73
66869854--66869903	26	1.9	26	91	0	82	20	8	30	42	1.80
66875465--66875513	21	2.3	22	79	10	57	20	12	12	55	1.68
66877737--66877766	16	1.9	16	93	6	53	40	0	6	53	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66884370--66884394	12	2.1	12	100	0	50	48	0	0	52	1.00
66885574--66885632	30	2.0	30	86	0	82	33	22	5	38	1.76
66885962--66886005	4	11.5	4	85	9	65	77	0	22	0	0.77
66885955--66886005	15	3.3	15	82	17	61	76	0	23	0	0.79
66885961--66886014	12	4.4	12	80	15	58	77	0	22	0	0.76
66886284--66886338	14	3.4	16	78	11	51	23	1	5	69	1.19
66886498--66886539	19	2.2	20	86	4	59	42	9	9	38	1.70
66886520--66886558	16	2.4	17	86	4	53	33	10	7	48	1.66
66886520--66886561	17	2.6	16	88	3	57	30	9	7	52	1.61
66886739--66887042	18	17.2	17	75	11	238	30	12	11	44	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240