genome.fa.s24.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  96  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30115279--30115323	15	3.1	15	83	3	65	48	0	13	37	1.42
30122010--30122040	2	15.5	2	93	0	53	0	3	48	48	1.17
30123047--30123144	26	3.7	26	80	8	126	31	13	25	29	1.93
30123047--30123164	53	2.2	54	87	1	175	35	12	23	27	1.92
30123138--30123192	28	2.0	28	92	0	92	41	7	23	27	1.80
30133235--30133330	48	2.0	48	87	4	140	29	29	19	21	1.98
30135887--30136087	101	2.0	101	98	0	384	50	11	4	33	1.59
30136197--30136261	11	6.1	11	74	12	64	56	0	43	0	0.99
30136239--30136317	24	3.3	24	77	10	90	67	0	32	0	0.91
30136215--30136286	16	5.2	13	74	22	51	65	0	34	0	0.93
30136827--30136877	13	4.0	13	76	5	50	64	7	1	25	1.31
30136649--30137717	154	7.0	151	80	11	1171	52	6	10	30	1.62
30136646--30137717	304	3.5	305	91	4	1702	52	6	10	30	1.62
30140496--30140621	43	2.9	42	81	12	148	19	20	29	30	1.97
30141270--30141301	14	2.2	15	94	5	57	21	0	25	53	1.46
30141553--30141922	47	7.9	47	93	0	623	34	11	14	39	1.83
30148421--30148546	43	2.9	42	81	12	148	19	20	29	30	1.97
30149193--30149227	15	2.3	15	90	9	54	25	0	22	51	1.48
30149479--30149968	47	10.4	47	93	1	806	33	11	14	40	1.81
30151684--30151749	9	7.2	9	76	10	53	43	25	7	22	1.79
30151692--30151725	17	1.9	18	88	5	52	41	20	11	26	1.87
30151719--30151762	11	4.2	11	82	11	56	54	25	2	18	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30151719--30151760	20	2.1	20	90	0	66	52	26	2	19	1.58
30154257--30154322	27	2.4	27	80	9	73	50	9	6	34	1.59
30154316--30154361	22	2.1	22	84	8	58	58	15	2	23	1.48
30156437--30156893	88	5.0	87	81	9	452	36	20	10	32	1.87
30157269--30157321	20	2.7	20	85	8	65	32	7	3	56	1.45
30157272--30157315	19	2.4	19	85	11	56	29	9	4	56	1.50
30157350--30157390	21	2.0	22	90	9	68	29	7	0	63	1.21
30157488--30157573	29	2.9	31	78	16	85	30	3	2	63	1.23
30157521--30157585	30	2.2	29	81	10	69	36	1	1	60	1.16
30157525--30157587	29	2.2	29	78	13	67	38	1	1	58	1.17
30163296--30163338	21	2.0	23	81	9	54	51	4	9	34	1.55
30164985--30166407	89	16.0	89	89	3	2013	26	23	18	31	1.98
30167651--30167697	7	6.6	7	81	13	60	14	17	0	68	1.22
30167660--30167709	21	2.4	22	76	10	59	16	20	0	64	1.30
30168640--30168678	19	2.1	19	90	0	60	66	7	12	12	1.43
30172876--30172918	21	2.0	23	81	9	54	51	4	9	34	1.55
30175753--30175797	17	2.6	16	83	13	54	35	2	6	55	1.38
30181086--30181114	6	4.8	6	100	0	58	34	0	13	51	1.42
30182250--30182284	15	2.3	15	100	0	70	42	0	0	57	0.99
30182417--30182462	20	2.3	20	88	7	67	10	36	17	34	1.85
30182532--30182587	11	5.5	10	76	16	53	67	0	32	0	0.91
30182541--30182585	17	2.8	17	80	12	51	66	0	33	0	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30182839--30182882	21	2.1	21	100	0	88	36	9	9	45	1.68
30183312--30183389	38	2.0	39	92	5	131	28	11	8	51	1.68
30183468--30183649	58	3.2	58	79	8	212	34	13	10	41	1.80
30183903--30183941	16	2.4	16	95	0	69	38	0	2	58	1.12
30187056--30187093	20	1.9	20	88	0	58	52	10	2	34	1.50
30187504--30187620	57	2.1	56	86	1	162	50	11	13	23	1.75
30192543--30192620	26	3.0	26	79	7	86	30	30	28	10	1.90
30195391--30195600	109	1.9	108	88	4	316	32	20	17	29	1.96
30211595--30211634	20	2.0	20	90	0	62	17	5	2	75	1.10
30212375--30213030	328	2.0	324	89	1	1008	33	11	19	36	1.88
30214472--30214500	13	2.1	14	93	6	51	34	0	20	44	1.52
30222954--30223147	105	1.8	105	81	2	237	32	15	25	26	1.96
30225743--30225881	40	3.5	40	71	6	122	26	19	23	30	1.98
30227801--30227916	33	3.6	32	75	12	112	37	1	6	54	1.38
30233562--30233588	5	5.4	5	100	0	54	59	0	0	40	0.98
30233600--30233629	15	2.0	15	100	0	60	40	0	6	53	1.27
30235458--30235496	20	1.9	21	85	15	55	69	5	0	25	1.09
30236166--30236249	28	3.1	27	70	13	66	73	4	1	20	1.08
30236186--30236225	19	2.1	19	90	0	62	87	0	2	10	0.63
30236186--30236225	9	4.3	9	82	17	55	87	0	2	10	0.63
30236747--30236968	122	1.8	123	93	1	383	37	9	17	35	1.83
30240098--30240191	46	2.0	46	100	0	188	39	24	12	23	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30242391--30242497	51	2.1	51	100	0	214	22	20	20	36	1.95
30244990--30245095	50	2.1	50	83	0	131	29	20	28	21	1.98
30244998--30245121	50	2.5	50	79	0	122	29	24	25	21	1.99
30254597--30254888	50	5.9	50	84	4	322	22	28	20	28	1.99
30258584--30258627	19	2.3	19	84	4	52	63	2	9	25	1.35
30259881--30259990	32	3.5	32	77	1	114	37	20	20	21	1.95
30259990--30260060	26	2.7	26	91	0	115	35	26	22	15	1.94
30260189--30260264	24	3.2	23	81	5	80	43	27	6	22	1.78
30260276--30260525	27	9.3	27	85	1	313	23	20	20	35	1.96
30275508--30275557	19	2.5	20	84	12	68	20	8	14	58	1.61
30278377--30278426	15	3.4	15	75	22	52	18	10	8	64	1.48
30282432--30282457	7	3.7	7	100	0	52	15	0	0	84	0.62
30286550--30286574	13	1.9	13	100	0	50	8	0	20	72	1.10
30286746--30286849	52	2.0	52	98	0	199	21	8	14	55	1.65
30292612--30292837	80	2.8	79	83	1	263	40	8	16	34	1.79
30298841--30300239	708	2.0	708	82	3	1722	31	21	14	32	1.93
30298841--30300252	354	4.0	354	82	2	1543	31	21	14	32	1.93
30301462--30301490	15	1.9	15	100	0	58	31	6	13	48	1.69
30301788--30301835	19	2.4	19	80	13	53	22	31	18	27	1.97
30314079--30314107	15	1.9	15	100	0	58	31	6	13	48	1.69
30319278--30319314	9	4.1	9	85	0	56	45	10	10	32	1.74
30336583--30336977	110	3.6	109	91	2	605	34	18	14	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30337512--30337577	20	3.3	20	68	6	53	48	0	13	37	1.43
30338647--30338690	14	3.1	14	87	9	63	81	0	13	4	0.83
30338652--30338686	17	2.1	17	88	0	52	85	0	11	2	0.69
30343672--30343798	46	3.0	42	85	11	172	26	24	2	46	1.65
30343672--30343777	46	2.4	46	93	4	182	29	26	2	41	1.70
30355185--30355218	15	2.3	15	100	0	68	17	17	5	58	1.57
30356022--30356064	20	2.2	20	86	0	59	44	20	6	27	1.77
30364095--30364125	15	2.1	15	93	0	53	25	0	6	67	1.14
30364101--30364134	15	2.3	15	89	0	50	29	0	5	64	1.17
30366034--30366067	16	2.0	17	88	11	52	23	5	14	55	1.61
30366034--30366068	18	2.0	18	88	5	54	22	5	14	57	1.59
30372115--30372205	44	2.0	44	85	6	121	34	4	27	34	1.77
30372352--30372393	15	2.9	15	82	10	52	52	0	0	47	1.00
30372458--30372504	16	3.0	16	78	12	53	51	2	0	46	1.13
30372603--30372637	18	2.0	17	88	5	52	54	0	0	45	0.99
30372657--30372703	24	2.0	24	84	15	64	51	8	4	36	1.52
30372343--30372758	120	3.5	120	94	0	717	49	5	2	42	1.39
30372740--30373162	47	9.3	45	69	20	258	47	3	3	45	1.35
30372819--30372855	18	2.1	18	89	0	56	56	2	0	40	1.13
30372774--30373162	91	4.3	91	97	0	715	47	3	3	46	1.35
30381326--30381366	21	2.0	20	85	4	55	43	12	12	31	1.79
30381697--30382071	187	2.0	187	94	0	651	36	14	14	35	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30382854--30382930	22	3.4	22	67	13	66	36	25	2	35	1.70
30382841--30382935	46	2.1	46	95	0	172	42	23	2	32	1.66
30386829--30386923	46	2.1	46	93	0	163	41	23	2	33	1.66
30391957--30391998	23	1.9	21	90	9	66	54	11	9	23	1.66
30394935--30394997	32	2.0	32	96	0	117	38	6	20	34	1.78
30395593--30395966	122	3.0	122	89	1	550	31	14	21	32	1.93
30398977--30399220	116	2.1	116	91	1	400	44	6	9	39	1.63
30399214--30399539	23	14.2	23	75	14	255	27	0	22	50	1.52
30399215--30399731	45	11.5	45	73	14	269	26	0	23	49	1.55
30399403--30399447	15	3.1	15	96	3	83	20	0	26	53	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240