genome.fa.s24.2.7.7.80.10.50.1000.145.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  145  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45543604--45543658	6	9.7	6	82	7	62	12	18	1	67	1.32
45544715--45544775	10	5.8	11	86	7	65	22	4	4	67	1.30
45544715--45544752	11	3.3	12	89	7	53	21	5	2	71	1.19
45544738--45544771	9	3.7	9	92	7	59	17	0	8	73	1.08
45544727--45544770	19	2.3	19	88	4	61	20	2	6	70	1.21
45558660--45558698	20	1.9	21	84	5	53	46	0	12	41	1.42
45560437--45560493	22	2.6	22	88	0	78	38	8	10	42	1.71
45562975--45563029	20	2.7	21	80	8	60	36	20	32	10	1.87
45563034--45563102	20	3.5	20	74	4	68	40	17	27	14	1.88
45568923--45569007	40	2.1	40	100	0	170	40	22	2	35	1.67
45569278--45569594	41	7.8	41	75	10	215	15	23	23	37	1.93
45569277--45569554	82	3.4	82	81	4	303	15	23	23	37	1.93
45570111--45570148	15	2.5	15	86	0	58	21	0	42	36	1.53
45570084--45570151	15	4.9	14	74	13	52	23	0	35	41	1.55
45571875--45571911	10	3.7	10	92	0	65	43	0	13	43	1.44
45574667--45574717	22	2.4	22	86	3	77	49	7	0	43	1.32
45574642--45574763	56	2.2	56	93	1	217	48	9	0	41	1.40
45580155--45580184	13	2.3	13	100	0	60	56	6	0	36	1.26
45580249--45580379	9	15.9	9	69	17	61	44	16	3	36	1.63
45580241--45580366	25	5.2	25	71	9	91	46	15	2	35	1.58
45580339--45580374	16	2.2	16	95	0	63	52	16	0	30	1.44
45585824--45585947	66	1.9	65	85	8	171	41	16	25	16	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45585825--45585963	66	2.1	65	82	6	165	41	17	26	15	1.89
45585939--45586030	21	4.4	21	87	0	103	33	18	42	5	1.73
45586374--45586591	43	5.0	43	79	4	215	22	16	30	30	1.96
45586374--45586591	87	2.5	86	82	3	242	22	16	30	30	1.96
45586333--45586624	86	3.4	86	79	8	240	25	16	29	29	1.97
45586393--45586771	43	8.8	43	72	9	134	24	21	28	25	1.99
45586830--45586873	21	2.1	21	91	0	70	38	27	20	13	1.90
45591933--45591967	17	2.1	17	94	0	61	28	14	5	51	1.65
45597237--45597415	85	2.1	85	100	0	358	37	8	27	26	1.85
45598578--45598762	40	4.6	39	82	6	203	23	22	27	25	2.00
45598632--45598785	79	1.9	79	84	7	206	25	20	27	26	1.99
45602662--45602709	11	4.3	12	75	15	50	43	2	0	54	1.12
45602665--45602707	22	2.0	22	86	9	61	41	2	0	55	1.12
45602662--45602709	5	8.7	6	80	13	50	43	2	0	54	1.12
45602831--45602869	19	2.1	18	95	4	69	64	0	2	33	1.08
45606472--45606519	24	2.0	24	100	0	96	41	12	8	37	1.73
45610098--45610262	27	6.1	27	83	6	192	40	18	20	20	1.92
45610091--45610383	54	5.4	55	77	7	215	40	19	19	21	1.92
45610096--45610386	27	10.8	27	79	4	171	39	19	19	21	1.92
45610442--45610514	24	3.1	23	72	5	65	20	4	23	52	1.64
45610579--45610642	27	2.4	27	82	12	71	20	23	23	32	1.98
45610640--45610695	26	2.2	26	83	0	67	12	21	32	33	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45610686--45610764	32	2.5	32	93	0	131	17	18	25	37	1.93
45610787--45610951	32	5.2	32	80	0	161	20	20	21	37	1.94
45610794--45610951	64	2.5	64	85	3	203	20	21	20	37	1.95
45610750--45610952	96	2.1	95	81	0	226	22	20	19	37	1.94
45612435--45612626	29	6.6	30	80	5	191	26	15	22	36	1.93
45623377--45623433	25	2.3	24	77	17	71	63	3	1	31	1.22
45624154--45624195	22	2.1	19	86	13	57	52	0	2	45	1.13
45628645--45628895	27	9.3	27	81	6	278	44	18	17	19	1.87
45628645--45628895	81	3.1	80	85	4	326	44	18	17	19	1.87
45629038--45629156	28	4.3	28	84	1	150	27	23	18	30	1.98
45629119--45629184	33	2.0	33	82	5	80	31	24	16	27	1.96
45629960--45629996	17	2.2	17	90	0	56	48	8	18	24	1.75
45638340--45638842	27	18.6	27	81	3	431	22	15	20	41	1.89
45640756--45640870	43	2.7	42	78	11	126	24	16	27	31	1.96
45646616--45646670	16	3.4	16	71	14	58	50	3	3	41	1.37
45646608--45646673	33	2.0	33	100	0	132	51	6	3	39	1.42
45646853--45646896	18	2.4	18	81	7	54	29	2	2	65	1.16
45659606--45659659	25	2.2	25	83	6	65	33	22	20	24	1.97
45671610--45671647	20	1.9	19	94	5	67	31	15	28	23	1.96
45673763--45673955	50	3.8	50	86	0	269	26	22	29	21	1.99
45681160--45681189	13	2.3	13	94	0	51	33	3	13	50	1.58
45681284--45681575	50	5.8	50	89	1	433	25	22	30	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45681284--45681575	99	2.9	100	90	1	433	25	22	30	21	1.99
45686124--45686180	18	3.3	18	71	14	66	43	8	1	45	1.45
45686134--45686188	17	3.3	17	70	14	60	49	9	3	38	1.52
45686125--45686199	33	2.3	33	100	0	150	46	9	2	41	1.50
45687566--45687612	23	2.0	23	95	0	85	48	17	10	23	1.77
45695450--45695573	43	2.9	43	79	11	130	22	19	27	30	1.98
45696431--45696562	24	5.6	24	69	7	90	26	19	14	39	1.90
45696415--45696585	47	3.6	47	95	1	283	27	19	12	40	1.88
45696415--45696604	23	8.1	23	72	3	155	26	18	13	40	1.88
45703469--45703591	43	2.9	42	76	15	126	22	19	28	29	1.98
45704434--45704647	23	9.1	23	73	6	160	27	18	13	40	1.88
45704458--45704628	24	7.2	24	74	6	143	27	18	12	40	1.87
45704434--45704652	47	4.7	47	93	0	357	26	18	13	41	1.87
45704434--45704695	94	2.8	93	87	4	305	27	18	14	39	1.89
45704662--45704712	23	2.2	23	85	0	66	21	17	17	43	1.88
45714313--45714395	26	3.3	26	61	19	66	25	15	27	31	1.96
45714306--45714500	51	3.9	49	84	4	248	25	17	27	29	1.98
45714309--45714500	102	1.9	101	91	3	314	25	18	26	29	1.98
45714501--45714791	41	7.0	41	77	17	312	23	17	25	32	1.97
45714501--45714792	84	3.5	84	96	0	532	23	17	25	32	1.97
45728746--45728773	14	2.0	14	100	0	56	57	0	7	35	1.26
45729918--45730143	43	5.3	43	86	0	317	22	29	19	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45730649--45730709	25	2.4	24	86	8	77	42	1	11	44	1.50
45730649--45730720	17	4.2	17	72	19	60	41	1	12	44	1.51
45730671--45730720	8	6.0	8	75	25	50	40	2	12	46	1.52
45730813--45730872	17	3.5	17	80	8	68	36	0	16	46	1.47
45730816--45730899	34	2.3	36	88	8	118	34	0	16	48	1.47
45730816--45730872	9	6.8	8	80	7	60	33	0	17	49	1.47
45730824--45730991	46	3.5	46	69	13	131	34	1	17	47	1.56
45730816--45730901	17	4.8	17	73	16	66	34	0	16	48	1.46
45731734--45731767	16	2.1	16	89	10	52	44	32	0	23	1.54
45734884--45734936	23	2.3	23	78	12	54	24	1	3	69	1.15
45734858--45735071	106	2.0	107	88	1	315	27	11	10	50	1.70
45735957--45735996	21	1.9	21	89	0	62	32	42	0	25	1.55
45736246--45736346	14	7.0	14	75	8	60	34	42	0	21	1.60
45736250--45736314	22	3.0	22	86	4	78	33	44	1	20	1.61
45736246--45736293	7	6.4	7	77	13	51	33	45	2	18	1.61
45735841--45736461	298	2.1	296	89	2	951	41	25	2	30	1.68
45736658--45736794	73	1.9	73	84	3	186	24	22	22	30	1.99
45736710--45737153	114	3.9	114	85	2	588	25	26	22	26	2.00
45737053--45737224	73	2.4	72	82	1	200	24	25	22	27	2.00
45736723--45737152	228	1.9	229	88	2	650	25	26	22	26	2.00
45747194--45747223	14	2.1	15	93	6	53	43	26	10	20	1.83
45749228--45749271	17	2.6	17	96	0	79	13	40	2	43	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45755165--45755273	33	3.5	32	89	9	156	18	22	30	28	1.97
45760617--45760649	17	2.0	17	88	5	50	54	0	3	42	1.15
45761427--45761492	28	2.4	28	87	5	91	51	12	10	25	1.71
45765744--45765776	3	11.0	3	100	0	66	66	0	0	33	0.92
45773035--45773097	30	2.1	30	93	0	108	38	7	23	30	1.84
45777032--45777072	18	2.2	19	86	4	57	58	2	0	39	1.11
45781383--45781566	20	9.2	20	66	10	117	20	32	18	28	1.96
45781304--45781611	119	2.6	120	88	1	465	22	30	16	30	1.96
45781304--45781611	40	7.7	40	88	2	431	22	30	16	30	1.96
45784260--45784453	50	3.9	50	81	2	203	27	22	27	22	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240