genome.fa.s24.2.7.7.80.10.50.1000.238.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  238  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72170904--72170996	18	5.2	18	82	0	123	27	23	16	32	1.96
72176801--72176835	12	3.0	12	87	4	54	54	0	20	25	1.45
72184315--72184389	37	2.0	37	100	0	150	46	16	13	24	1.82
72187011--72187045	12	3.0	12	87	4	54	54	0	20	25	1.45
72191930--72191972	9	4.5	10	77	11	54	39	2	2	55	1.25
72191933--72191997	28	2.3	29	86	2	87	32	3	4	60	1.33
72192428--72192464	16	2.2	18	86	13	53	62	8	0	29	1.24
72195457--72195540	40	2.1	40	97	0	159	48	16	4	29	1.67
72197422--72197496	14	5.2	14	70	12	53	68	4	26	1	1.16
72199708--72199748	21	2.0	21	90	9	66	43	9	7	39	1.65
72201865--72201928	30	2.1	30	82	5	76	37	12	4	45	1.63
72202041--72202084	11	3.3	15	73	26	53	34	6	11	47	1.66
72205153--72205187	12	3.0	12	87	4	54	54	0	20	25	1.45
72206937--72206994	16	3.6	16	90	0	71	32	0	36	31	1.58
72207239--72207273	18	2.0	17	88	5	52	54	0	0	45	0.99
72207126--72207438	156	2.0	156	95	2	567	44	3	5	47	1.42
72207390--72207429	18	2.2	19	90	4	64	55	0	0	45	0.99
72207512--72207548	16	2.2	17	86	13	51	54	0	2	43	1.14
72207633--72207669	16	2.2	17	86	13	51	54	0	2	43	1.14
72207381--72207791	121	3.4	121	96	2	740	47	5	2	44	1.39
72207798--72208013	91	2.4	90	90	1	333	47	3	3	46	1.35
72207798--72208010	44	4.6	47	74	17	180	47	3	3	46	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72248783--72248866	41	2.0	41	100	0	168	40	19	9	30	1.83
72270710--72270753	20	2.2	20	84	11	56	63	2	4	29	1.26
72271141--72271194	28	1.9	28	96	0	99	31	3	9	55	1.49
72271146--72271202	28	2.0	28	93	0	96	35	1	8	54	1.42
72271157--72271276	30	4.1	29	74	14	95	43	3	5	48	1.41
72271198--72271276	20	4.0	20	72	9	63	48	3	2	45	1.34
72289430--72289485	26	2.2	26	81	12	62	58	8	1	30	1.39
72289782--72289831	15	3.3	15	82	0	73	42	18	18	22	1.90
72289783--72289831	5	9.8	5	79	0	53	42	18	18	20	1.89
72291224--72291294	31	2.3	30	79	13	81	53	9	8	28	1.63
72295106--72295230	60	2.1	60	80	8	139	44	8	11	35	1.71
72305067--72305119	25	2.1	25	89	0	79	18	22	20	37	1.94
72305124--72305180	24	2.4	24	79	5	62	14	24	21	40	1.90
72309257--72309325	24	2.8	25	75	4	86	20	11	14	53	1.71
72309973--72310047	27	2.9	25	71	21	73	61	8	9	21	1.52
72320818--72320865	4	11.2	4	82	8	51	4	18	54	22	1.61
72320817--72320863	17	2.7	17	96	3	85	4	17	55	23	1.59
72323055--72323137	40	2.1	40	86	0	112	30	13	13	43	1.82
72323883--72323923	15	2.6	16	82	14	50	58	0	0	41	0.98
72327845--72327939	45	2.1	46	90	4	147	64	13	7	14	1.49
72328355--72328396	15	2.5	18	81	14	54	57	7	2	33	1.39
72343679--72343726	23	2.0	24	84	8	62	39	0	6	54	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72343689--72343723	16	2.2	16	90	10	54	34	0	2	62	1.10
72343644--72343713	31	2.3	31	82	5	79	32	0	7	60	1.24
72349053--72349084	15	2.1	15	100	0	64	34	0	25	40	1.56
72355490--72355521	15	2.1	15	100	0	64	40	6	18	34	1.76
72368771--72368819	26	1.9	25	87	4	71	40	22	10	26	1.86
72385630--72385681	17	3.4	17	65	29	53	55	7	0	36	1.29
72385630--72385689	28	2.1	28	100	0	120	55	6	0	38	1.27
72390212--72390266	26	2.1	27	86	3	76	40	25	9	25	1.85
72396502--72396594	18	5.2	18	85	0	114	31	11	24	32	1.91
72396502--72396594	36	2.6	36	88	6	152	31	11	24	32	1.91
72408762--72408817	28	2.0	28	100	0	112	60	14	0	25	1.34
72408781--72408831	20	2.5	20	84	6	68	56	11	0	31	1.35
72408930--72408986	23	2.5	23	94	0	87	43	12	14	29	1.81
72409003--72409043	19	2.0	20	86	9	57	46	0	0	53	1.00
72409016--72409066	10	5.1	10	79	9	59	35	0	1	62	1.06
72414657--72414904	128	1.9	128	95	0	451	28	19	25	26	1.99
72416469--72416543	31	2.5	30	82	6	98	30	10	5	53	1.58
72421256--72421315	30	2.0	31	90	6	97	48	0	3	48	1.18
72424160--72425457	651	2.0	650	94	0	2299	31	18	24	25	1.97
72428102--72428170	22	3.1	22	97	0	129	4	31	17	46	1.68
72430268--72430315	21	2.3	20	78	3	51	50	10	2	37	1.49
72430580--72430686	51	2.1	51	98	1	207	51	16	7	24	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72430593--72430699	51	2.1	51	87	3	153	49	18	9	22	1.76
72431616--72431752	51	2.7	51	79	0	175	39	6	13	40	1.71
72432112--72432171	28	2.1	28	93	0	102	33	20	26	20	1.97
72432118--72432184	28	2.4	28	80	9	82	32	20	25	20	1.97
72434446--72434582	51	2.7	51	79	0	175	39	6	13	40	1.71
72436555--72436605	21	2.4	21	90	6	77	21	15	3	58	1.53
72436567--72436608	21	2.0	21	100	0	84	23	14	4	57	1.56
72445924--72445988	18	3.4	18	78	18	69	40	0	0	60	0.97
72445958--72445995	18	2.1	18	90	5	58	36	0	0	63	0.95
72448104--72448170	30	2.3	30	84	7	84	46	2	2	47	1.33
72452294--72452448	84	1.8	84	88	0	238	25	25	29	18	1.98
72452294--72452470	84	2.1	84	85	2	230	26	25	29	18	1.98
72458377--72458401	12	2.1	12	100	0	50	8	44	0	48	1.32
72462130--72462180	25	2.0	26	88	3	77	41	5	0	52	1.25
72464207--72464250	21	2.1	21	83	4	54	50	2	2	45	1.27
72464761--72465044	95	3.0	95	89	1	406	20	15	17	46	1.84
72467184--72467247	29	2.2	29	80	5	76	40	3	1	54	1.25
72467494--72467557	27	2.4	27	78	5	67	39	3	1	56	1.25
72467574--72467644	19	3.7	19	79	7	63	38	9	2	49	1.51
72468269--72468360	35	2.5	36	78	11	96	58	2	4	34	1.30
72472191--72472306	57	2.0	58	93	1	198	38	9	22	29	1.85
72477367--72477403	18	2.1	18	94	0	65	37	10	18	32	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72479221--72479259	18	2.1	19	85	4	53	51	12	12	23	1.74
72479549--72479694	79	1.8	79	86	5	215	34	18	22	24	1.96
72480493--72480555	24	2.7	24	80	7	76	57	3	3	36	1.31
72480568--72480596	13	2.2	13	100	0	58	31	24	13	31	1.94
72484451--72484482	3	10.7	3	93	0	55	68	3	0	28	1.04
72484808--72484853	23	2.0	23	83	12	58	45	0	2	52	1.13
72499482--72499511	14	2.1	14	100	0	60	26	6	20	46	1.75
72501084--72501120	9	4.1	9	89	0	56	27	10	16	45	1.80
72511524--72511617	23	4.1	23	85	0	134	47	4	25	22	1.69
72516021--72516114	23	4.1	23	83	0	125	47	5	24	22	1.71
72517158--72517239	42	2.0	42	95	0	146	23	24	21	30	1.99
72518959--72519006	11	4.4	11	75	0	51	16	6	14	62	1.51
72520573--72520602	4	7.5	4	92	0	51	46	23	3	26	1.68
72521523--72521587	32	2.0	32	96	0	121	29	29	7	33	1.85
72523834--72523877	9	5.1	9	83	10	65	34	0	9	56	1.31
72523831--72523868	16	2.4	16	90	0	58	36	0	7	55	1.29
72524115--72524164	17	2.9	17	88	5	75	56	2	0	42	1.11
72525680--72525751	35	2.1	35	91	0	117	29	13	13	43	1.83
72530204--72530244	18	2.3	18	87	8	57	53	4	4	36	1.44
72530262--72530326	27	2.3	27	84	10	78	46	3	4	46	1.39
72533900--72533984	42	2.0	42	97	0	161	25	9	22	42	1.83
72534407--72534496	45	2.0	46	84	6	121	25	21	34	18	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72534867--72534894	11	2.5	11	100	0	56	28	21	7	42	1.79
72535277--72535320	22	2.0	22	86	0	61	43	0	2	54	1.12
72541417--72541583	84	2.0	84	84	2	219	22	25	32	19	1.97
72542440--72542470	6	5.3	6	96	3	55	48	0	0	51	1.00
72545508--72545562	28	2.0	29	82	7	69	49	1	3	45	1.30
72546569--72546745	87	2.0	87	100	0	354	39	12	19	28	1.88
72548860--72548948	33	2.7	33	98	0	169	17	21	34	25	1.96
72549291--72549418	33	3.7	33	86	11	184	19	21	33	25	1.97
72551831--72551892	17	3.3	20	66	25	62	16	4	33	45	1.68
72551822--72551914	36	2.6	36	98	0	177	20	5	29	45	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240