genome.fa.s24.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  31  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10931474--10931540	26	2.6	26	95	2	118	46	4	0	49	1.22
10932227--10932276	15	3.1	15	85	8	64	42	0	14	44	1.44
10935502--10935557	25	2.2	25	100	0	112	26	16	30	26	1.96
10935860--10935910	25	2.0	25	96	0	93	58	9	11	19	1.60
10939793--10939828	14	2.5	15	90	4	56	33	8	0	58	1.28
10940041--10940076	19	2.0	18	89	10	56	47	11	8	33	1.69
10940046--10940084	19	2.1	19	90	0	60	51	12	10	25	1.71
10943823--10944186	126	2.9	126	94	0	622	27	23	18	30	1.98
10944335--10944559	96	2.3	95	77	7	229	41	16	2	39	1.62
10944977--10945027	17	3.0	17	80	11	52	60	0	1	37	1.08
10953263--10953341	10	7.7	10	73	17	56	58	0	1	40	1.06
10953263--10953294	11	3.0	11	95	4	57	56	0	0	43	0.99
10953339--10953396	20	3.0	20	77	12	66	53	1	0	44	1.10
10953371--10953423	21	2.7	19	80	11	61	58	1	1	37	1.20
10953315--10953425	10	11.7	9	71	21	59	54	0	0	43	1.12
10953661--10953690	3	10.0	3	92	0	51	70	0	30	0	0.88
10953701--10953749	20	2.5	20	90	9	75	34	0	2	63	1.06
10953701--10953775	10	7.8	10	73	16	61	37	1	1	60	1.14
10953714--10953798	20	4.3	20	73	14	54	38	2	1	57	1.19
10953740--10953773	17	2.0	17	88	0	50	44	2	0	52	1.16
10953745--10953802	19	3.1	19	78	11	57	41	5	0	53	1.23
10953733--10953802	20	3.6	20	72	18	67	41	4	0	54	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10953790--10953859	34	2.0	34	83	8	88	34	4	1	60	1.25
10953772--10953851	20	4.2	20	65	20	55	33	5	1	60	1.27
10955863--10955916	25	2.2	24	83	3	63	14	20	29	35	1.93
10955875--10955922	24	2.0	25	91	4	80	12	16	29	41	1.85
10955885--10955935	24	2.1	24	85	0	66	15	13	25	45	1.83
10955964--10956023	25	2.4	25	85	2	84	16	15	30	38	1.89
10977577--10977691	40	2.8	41	76	10	128	36	20	21	20	1.95
10977804--10977849	20	2.4	19	85	7	58	26	4	4	65	1.30
10978191--10978220	15	2.1	15	93	6	53	30	0	36	33	1.58
10978349--10978447	7	14.1	7	73	12	51	16	2	41	40	1.59
10978349--10978422	21	3.5	20	73	14	69	14	2	45	36	1.60
10981739--10981892	43	3.6	43	72	7	143	31	17	21	29	1.96
10981649--10981843	86	2.3	85	78	5	207	29	16	22	30	1.96
10981694--10981863	86	2.0	86	80	4	191	31	16	21	30	1.95
10984339--10984524	93	2.0	93	94	0	327	41	10	12	35	1.78
10987310--10987363	21	2.6	21	96	0	99	25	9	33	31	1.88
10987575--10987638	33	2.0	32	87	3	92	46	0	3	50	1.17
10991553--10991697	41	3.5	41	85	6	188	22	29	20	26	1.99
10991635--10991820	41	4.5	41	87	2	241	32	23	17	26	1.97
10992153--10992579	199	2.2	196	92	3	678	42	14	4	38	1.66
10993540--10993564	13	1.9	13	100	0	50	40	24	4	32	1.73
10999330--10999599	41	6.6	42	86	6	201	30	25	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10999414--10999599	41	4.5	41	89	2	259	32	24	17	25	1.97
10999930--11000366	203	2.1	202	91	2	680	42	15	4	37	1.66
11001321--11001345	13	1.9	13	100	0	50	40	24	4	32	1.73
11002889--11002982	9	10.4	9	89	0	125	42	25	7	24	1.80
11010374--11010425	24	2.2	24	89	0	77	55	9	1	32	1.43
11012324--11012375	24	2.2	24	89	0	77	55	9	1	32	1.43
11017616--11017685	26	2.8	24	74	18	70	52	1	2	42	1.24
11017853--11017900	22	2.2	21	88	3	69	22	0	29	47	1.51
11017937--11017985	13	3.4	14	78	13	55	16	0	32	51	1.45
11018003--11018035	16	2.1	16	88	11	50	42	0	0	57	0.98
11018281--11018343	20	3.1	20	77	11	74	50	0	4	44	1.23
11018284--11018343	10	5.8	10	78	11	59	48	0	5	46	1.24
11018729--11018783	27	2.0	27	96	0	101	54	7	9	29	1.58
11022824--11022967	43	3.3	43	93	0	225	21	16	28	33	1.95
11028312--11028434	28	4.5	28	84	2	151	34	12	25	28	1.92
11028315--11028434	55	2.2	54	85	5	152	34	11	25	29	1.91
11031103--11031225	25	5.0	25	70	13	94	17	26	21	34	1.96
11031122--11031259	72	1.9	73	80	7	165	17	26	19	36	1.94
11032549--11032605	14	4.4	13	72	16	55	61	0	1	36	1.07
11032589--11032621	15	2.1	17	88	11	52	60	0	0	39	0.97
11045350--11045512	81	2.0	81	97	0	308	34	15	15	33	1.90
11072213--11072253	21	2.0	21	90	0	64	29	21	29	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11077758--11077794	18	2.1	18	100	0	74	48	5	16	29	1.68
11077853--11077896	18	2.4	19	81	14	56	31	2	4	61	1.28
11081047--11081093	23	2.0	23	91	0	76	42	4	10	42	1.59
11081633--11081668	18	2.1	17	89	5	54	52	0	13	33	1.41
11082399--11082447	21	2.4	20	75	3	53	20	18	24	36	1.94
11082832--11082882	25	2.0	25	96	0	93	37	5	19	37	1.76
11085377--11085421	22	2.1	21	87	4	63	13	17	26	42	1.86
11085503--11085805	43	7.0	43	89	0	444	28	32	17	21	1.96
11085503--11085849	129	2.7	129	87	2	385	29	30	17	21	1.96
11090793--11090877	39	2.2	39	86	0	116	21	21	18	38	1.93
11090881--11090921	22	1.9	21	90	5	64	31	0	2	65	1.05
11091274--11091302	8	3.8	8	90	9	51	37	48	0	13	1.43
11091283--11091323	21	1.9	22	85	5	57	39	39	0	21	1.54
11091510--11091548	16	2.4	17	95	4	71	46	0	0	53	1.00
11091659--11091726	21	3.2	20	76	17	66	35	41	0	23	1.55
11091734--11091822	7	12.6	7	73	2	61	47	29	1	22	1.59
11091733--11091880	21	7.0	21	71	6	82	46	27	1	24	1.61
11092136--11092181	20	2.4	20	82	7	51	63	4	4	28	1.33
11092192--11092296	41	2.6	41	92	0	174	32	29	19	19	1.96
11095459--11095485	2	13.5	2	100	0	54	51	0	0	48	1.00
11095485--11095512	2	14.0	2	100	0	56	50	0	50	0	1.00
11103540--11103570	9	3.4	9	90	0	53	25	12	22	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11106321--11106376	24	2.3	24	80	14	62	39	16	26	17	1.91
11106363--11106522	24	6.5	24	70	11	74	34	21	26	18	1.96
11106340--11106478	72	1.9	72	82	5	174	31	20	28	18	1.97
11106397--11106477	23	3.4	22	75	11	63	29	20	30	18	1.97
11106458--11106516	26	2.3	26	88	2	93	38	23	22	15	1.92
11106458--11106531	26	2.9	25	78	13	87	39	24	21	14	1.91
11111285--11111317	17	1.9	17	93	0	57	12	18	3	66	1.36
11112294--11112339	19	2.4	19	85	10	58	39	17	6	36	1.76
11112306--11112351	19	2.6	18	86	10	67	39	10	2	47	1.51
11113582--11113638	11	4.9	11	75	10	51	38	12	3	45	1.59
11113585--11113638	24	2.3	24	83	3	74	37	12	3	46	1.60
11120677--11120729	27	1.9	27	88	3	79	20	11	7	60	1.55
11122422--11122478	6	8.8	6	75	21	53	75	0	22	1	0.90
11122422--11122476	20	2.8	20	77	5	67	74	0	23	1	0.91
11122578--11122633	29	2.0	29	92	3	96	55	5	12	26	1.58
11125371--11125820	44	10.0	45	72	8	308	26	23	18	31	1.98
11125373--11125793	181	2.3	180	84	7	577	25	23	18	31	1.97
11125373--11125777	92	4.5	89	85	6	539	25	23	19	31	1.98
11133883--11133922	20	2.0	20	95	0	71	30	12	25	32	1.92
11137302--11137341	14	2.9	14	85	3	55	50	12	5	32	1.62
11147687--11147736	17	2.7	20	78	18	70	10	0	44	46	1.37
11152325--11152374	17	2.7	20	78	18	70	10	0	44	46	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11157033--11157068	18	1.9	19	94	5	65	63	0	0	36	0.94
11157027--11157089	29	2.2	29	88	0	90	61	0	1	36	1.05
11160628--11160687	31	1.9	31	86	0	84	25	16	10	48	1.77
11162239--11162271	16	1.9	18	88	11	52	60	6	12	21	1.53
11162463--11162493	14	2.2	14	94	0	53	0	9	16	74	1.07
11163058--11163122	32	2.1	32	94	2	114	47	13	9	29	1.74
11166447--11166551	41	2.6	41	86	3	131	20	29	20	30	1.97
11166482--11166564	41	2.0	41	90	0	130	20	30	21	27	1.98
11166487--11166579	41	2.3	41	86	0	123	22	27	21	27	1.99
11173032--11173080	25	1.9	26	91	4	82	38	10	16	34	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240