genome.fa.s24.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  52  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17588433--17588587	63	2.5	60	87	5	213	47	16	1	34	1.55
17591082--17591179	49	2.0	49	100	0	196	30	12	12	44	1.78
17601263--17601292	15	2.0	15	93	0	51	63	0	13	23	1.29
17602563--17602634	24	3.0	24	74	13	76	61	1	0	37	1.05
17602582--17602619	20	1.9	19	89	5	58	65	0	0	34	0.93
17612342--17612398	15	3.9	15	73	11	55	43	7	19	29	1.77
17612334--17612418	30	2.8	30	90	0	125	45	7	21	25	1.76
17617003--17617079	15	5.1	15	71	12	59	44	7	19	28	1.78
17616995--17617079	30	2.8	30	92	0	134	44	7	21	27	1.77
17617234--17617290	2	28.5	2	100	0	114	0	49	0	50	1.00
17634962--17634990	15	2.0	15	93	6	51	41	0	0	58	0.98
17643985--17644018	16	2.1	17	89	10	54	11	11	20	55	1.67
17652221--17652258	19	2.0	19	100	0	76	52	26	15	5	1.64
17652670--17652932	131	2.0	131	98	0	508	34	12	8	44	1.73
17660555--17660604	24	2.2	22	82	10	57	62	10	14	14	1.55
17660563--17660616	24	2.2	24	83	9	65	64	9	12	12	1.49
17662277--17662396	58	2.1	58	100	0	240	42	13	15	28	1.85
17663712--17663747	18	2.0	18	88	0	54	61	11	2	25	1.43
17667334--17667442	57	1.9	56	88	3	166	40	8	10	41	1.69
17673323--17673400	39	2.0	39	97	0	147	42	20	6	30	1.77
17677340--17677387	22	2.2	22	96	0	87	27	31	0	41	1.56
17677446--17677511	30	2.2	29	84	5	87	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17678591--17678615	7	3.6	7	100	0	50	28	0	12	60	1.32
17679267--17679301	18	1.9	18	88	0	52	25	34	8	31	1.86
17679801--17679997	29	6.4	29	83	9	232	43	27	2	26	1.66
17679995--17680214	56	3.9	55	92	3	368	35	10	6	47	1.65
17680206--17680230	10	2.5	10	100	0	50	44	8	0	48	1.32
17682813--17683165	126	2.8	126	91	1	593	32	22	15	29	1.95
17682823--17683205	126	3.0	121	78	10	385	33	21	14	29	1.94
17684767--17684800	17	2.0	17	88	0	50	44	2	0	52	1.16
17686208--17686416	104	2.0	104	100	0	418	33	11	8	46	1.71
17694763--17695169	86	4.7	86	80	5	444	23	22	22	31	1.99
17694781--17695169	174	2.2	174	94	1	665	23	22	22	31	1.98
17696959--17696992	16	2.1	17	88	5	52	5	8	5	79	1.05
17699474--17699522	19	2.5	20	80	6	57	40	12	20	26	1.87
17705654--17705696	17	2.6	16	77	7	50	41	9	2	46	1.48
17710048--17710212	43	3.8	43	78	2	170	38	21	15	24	1.92
17710048--17710210	86	1.9	85	81	7	195	38	20	15	25	1.92
17715102--17715133	17	1.9	17	93	6	57	53	0	3	43	1.16
17717114--17717142	15	2.0	15	93	6	51	51	0	0	48	1.00
17722155--17722181	2	13.5	2	100	0	54	51	0	0	48	1.00
17725179--17725220	11	3.8	11	80	0	57	59	7	11	21	1.56
17725180--17725226	22	2.2	22	80	3	60	63	4	12	19	1.44
17725772--17725827	29	1.9	29	89	7	87	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17725740--17725831	47	2.0	47	82	0	112	46	3	0	50	1.17
17727341--17727391	23	2.2	23	86	10	77	50	5	0	43	1.26
17729773--17729851	27	2.9	27	70	15	65	53	7	7	31	1.57
17735727--17735785	18	3.3	18	82	0	64	33	15	33	16	1.91
17741768--17741841	35	2.1	35	100	0	148	25	21	10	41	1.85
17742312--17742389	27	2.9	27	80	3	95	21	25	29	23	1.99
17742656--17742738	38	2.2	39	93	2	141	39	2	3	54	1.31
17742903--17743020	8	16.4	8	63	26	59	51	13	0	33	1.47
17742929--17743131	27	8.1	27	80	15	224	55	10	0	33	1.39
17742983--17743264	19	15.2	19	68	20	127	54	11	1	31	1.45
17743004--17743260	49	6.1	41	70	20	156	54	12	1	31	1.46
17742934--17743110	49	3.5	48	89	5	237	55	10	0	33	1.39
17743174--17743262	39	2.2	41	88	6	128	56	11	3	29	1.51
17743004--17743261	61	4.1	60	72	19	188	55	12	1	31	1.46
17743010--17743140	21	6.0	21	70	24	74	55	11	0	32	1.41
17743105--17743291	61	3.1	60	72	11	166	54	12	1	31	1.47
17743995--17744065	37	2.0	36	83	10	92	50	1	9	38	1.44
17744655--17744692	19	2.0	19	100	0	76	31	15	26	26	1.96
17757750--17757811	17	3.5	17	79	16	81	46	11	6	35	1.65
17757738--17757811	36	2.1	36	100	0	148	47	13	5	33	1.66
17757738--17757795	19	3.2	19	76	18	77	46	15	5	32	1.68
17758969--17759035	33	2.0	33	100	0	134	22	32	11	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17760010--17760047	18	2.1	18	90	0	58	23	15	18	42	1.89
17763338--17763615	46	6.0	46	93	2	450	28	26	9	35	1.87
17767596--17767620	13	1.9	13	100	0	50	48	24	0	28	1.52
17770956--17771000	22	2.0	24	91	8	76	22	22	2	53	1.57
17771485--17771523	20	2.0	20	95	5	71	41	5	2	51	1.38
17772268--17772319	15	3.2	15	73	19	50	44	0	1	53	1.11
17772253--17772319	34	2.1	34	83	8	86	46	1	1	50	1.19
17772459--17772514	17	3.4	16	90	5	85	62	0	1	35	1.06
17772459--17772514	8	6.8	8	75	20	53	62	0	1	35	1.06
17773036--17773085	20	2.3	20	86	10	64	58	10	0	32	1.31
17775387--17775427	8	5.1	8	87	0	64	29	2	21	46	1.64
17778837--17778881	23	2.0	23	91	4	74	37	2	0	60	1.09
17778838--17778889	22	2.2	22	83	10	59	40	3	0	55	1.18
17782480--17782522	18	2.4	18	84	7	52	58	0	2	39	1.11
17782479--17782563	38	2.2	38	80	4	89	55	1	2	41	1.20
17783418--17783459	16	2.6	16	88	7	59	38	7	30	23	1.82
17783704--17783906	61	3.3	61	72	19	215	53	4	0	40	1.29
17783779--17783819	13	3.2	12	80	12	55	58	0	0	41	0.98
17783707--17784048	102	3.2	102	72	20	350	53	4	0	41	1.28
17783669--17783946	122	2.3	122	96	1	506	53	4	0	41	1.25
17783828--17783993	37	4.7	36	67	25	113	50	6	1	42	1.34
17783707--17784131	224	1.9	220	95	2	762	53	4	0	40	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17784058--17784083	12	2.2	12	100	0	52	53	0	0	46	1.00
17784224--17784250	12	2.2	12	100	0	54	51	0	0	48	1.00
17784498--17784559	32	1.9	32	96	0	115	29	9	22	38	1.86
17785145--17785176	15	2.1	15	100	0	64	75	0	0	25	0.81
17785249--17785296	23	2.1	23	92	0	78	58	14	4	22	1.54
17785278--17785626	111	3.1	112	62	15	263	52	8	5	34	1.53
17785401--17785447	24	2.0	24	87	4	69	44	0	2	53	1.12
17785401--17785448	23	2.1	23	84	7	62	45	0	2	52	1.12
17785187--17785634	222	2.0	222	96	0	833	50	7	4	37	1.52
17786743--17786779	17	2.1	18	90	10	58	51	5	0	43	1.24
17789194--17789252	25	2.4	25	97	0	109	57	20	6	15	1.60
17790131--17790156	5	5.2	5	100	0	52	80	0	19	0	0.71
17790203--17790243	17	2.3	17	87	8	55	63	4	24	7	1.40
17802441--17802469	14	2.1	14	100	0	58	44	13	13	27	1.82
17803325--17803352	9	3.1	9	100	0	56	57	10	0	32	1.33
17803295--17803495	59	3.1	67	83	13	278	44	8	5	41	1.59
17803484--17803525	16	2.6	16	92	0	66	42	7	2	47	1.43
17803499--17803554	23	2.5	23	82	2	69	44	1	1	51	1.22
17804397--17804484	21	4.2	21	77	2	70	20	18	18	43	1.89
17805731--17805771	21	1.9	22	85	14	59	39	4	12	43	1.63
17807286--17807332	22	2.1	22	84	0	58	57	8	14	19	1.63
17807666--17807716	25	2.0	25	100	0	102	41	7	15	35	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17811372--17811500	58	2.2	60	80	5	138	24	14	18	41	1.88
17817344--17817392	5	10.0	5	93	2	82	42	0	0	57	0.99
17821556--17821642	25	3.5	25	81	10	99	26	25	18	29	1.98
17825504--17825865	46	8.3	46	82	10	474	33	16	21	29	1.95
17825546--17825865	84	3.8	84	79	16	354	33	16	21	28	1.95
17825504--17825846	130	2.6	130	99	0	670	32	16	20	29	1.95
17825764--17825865	45	2.3	45	91	1	161	33	12	24	29	1.92
17827684--17827750	20	3.3	20	76	17	68	34	2	4	58	1.34
17849236--17849305	27	2.6	27	93	0	113	35	27	12	24	1.92
17849641--17849690	21	2.3	20	80	12	55	62	14	2	22	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240