genome.fa.s24.2.7.7.80.10.50.1000.189.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  189  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57918727--57918769	21	2.0	21	86	8	61	44	9	18	27	1.80
57929893--57929939	15	3.0	16	76	11	53	63	0	0	36	0.94
57932351--57932443	18	5.2	18	88	0	132	30	22	13	33	1.93
57945857--57945889	1	33.0	1	100	0	66	0	100	0	0	0.00
57946023--57946068	15	2.7	18	77	19	62	19	26	23	30	1.98
57953682--57953726	21	2.2	20	84	11	56	75	2	8	13	1.13
57966160--57966201	17	2.5	17	88	3	59	35	7	4	52	1.50
57970039--57970076	8	4.6	8	90	3	58	18	0	50	31	1.47
57970465--57970682	111	2.0	112	84	4	289	41	20	14	22	1.89
57971142--57971187	22	2.1	22	92	8	76	54	19	0	26	1.44
57971132--57971194	29	2.2	29	82	0	72	50	23	1	23	1.58
57971177--57971301	7	16.9	7	72	17	76	41	41	2	14	1.58
57971178--57971262	15	5.6	14	80	15	82	47	40	0	12	1.42
57971177--57971259	7	10.9	8	80	12	79	45	40	0	13	1.43
57971411--57971465	22	2.5	22	82	8	60	56	18	1	23	1.51
57984292--57984342	26	2.0	25	92	3	84	17	23	31	27	1.97
57987144--57987178	18	1.9	18	88	11	54	48	0	5	45	1.26
57989029--57989086	12	4.8	12	78	21	68	43	5	13	37	1.67
57989046--57989099	21	2.6	21	88	11	85	42	5	12	38	1.67
57989046--57989122	21	3.7	21	83	15	65	44	5	11	38	1.63
57989340--57989436	35	2.8	35	88	1	151	17	18	18	45	1.86
57992462--57992503	19	2.2	19	100	0	84	35	14	11	38	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57992462--57992508	19	2.6	18	93	6	69	34	14	10	40	1.81
57995655--57995813	45	3.5	44	94	4	266	33	15	23	28	1.94
57996326--57996356	1	31.0	1	93	0	53	3	0	0	96	0.21
57996324--57996359	8	4.5	8	92	0	54	8	0	0	91	0.41
58002862--58002910	3	16.3	3	91	8	82	34	0	0	65	0.93
58004245--58004274	14	2.1	15	93	6	53	33	6	20	40	1.78
58006885--58007035	46	3.3	46	91	1	243	29	21	15	33	1.94
58012834--58012875	22	2.0	21	85	4	57	42	11	0	45	1.41
58019170--58019220	26	2.0	26	84	0	66	31	7	9	50	1.64
58022022--58022088	33	2.0	33	100	0	134	11	23	28	35	1.91
58023509--58023567	29	2.0	29	96	0	109	37	8	0	54	1.31
58026293--58026368	38	2.0	38	100	0	152	52	13	13	21	1.73
58031020--58031096	22	3.5	23	85	8	99	35	9	0	55	1.31
58031030--58031094	10	6.1	10	72	19	51	35	6	0	58	1.23
58031033--58031096	22	2.9	22	92	0	110	34	7	0	57	1.27
58031237--58031292	30	1.9	30	88	3	87	32	12	1	53	1.49
58033259--58033304	19	2.4	19	85	7	58	21	21	13	43	1.86
58036161--58036240	14	6.0	14	68	20	55	76	0	22	1	0.86
58036161--58036237	13	5.7	13	77	22	54	77	0	20	1	0.83
58036164--58036226	24	2.7	24	83	14	78	76	0	22	1	0.88
58036173--58036237	10	6.7	10	77	10	64	78	0	20	1	0.83
58036181--58036237	30	1.9	29	86	10	80	77	0	21	1	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58036161--58036237	23	3.4	23	69	16	63	77	0	20	1	0.83
58037573--58037727	45	3.5	45	84	5	224	26	25	23	24	2.00
58037559--58037731	89	1.9	89	91	0	283	27	25	23	23	2.00
58037998--58038459	50	9.2	50	71	3	300	31	21	21	25	1.98
58037966--58038459	100	4.9	100	84	2	544	30	21	21	26	1.98
58037966--58038449	201	2.4	202	82	2	562	30	21	21	26	1.98
58038464--58038671	44	4.8	43	76	9	172	30	19	21	28	1.97
58038463--58038618	85	1.8	85	82	8	201	30	21	19	28	1.98
58038440--58038717	129	2.2	129	79	6	305	32	18	20	28	1.96
58038873--58039208	44	7.8	43	70	11	215	31	19	20	28	1.97
58039000--58039155	85	1.8	85	84	5	217	29	19	19	32	1.96
58038791--58039215	128	3.3	128	87	3	552	31	20	20	27	1.97
58040967--58041029	10	6.1	10	73	14	56	34	6	0	58	1.23
58040967--58041031	22	3.0	22	90	2	105	33	7	0	58	1.27
58041040--58041093	24	2.3	23	78	12	56	35	14	5	44	1.69
58043178--58043245	22	3.1	22	70	8	57	36	19	27	16	1.93
58045236--58045283	19	2.4	21	76	16	57	60	0	4	35	1.16
58045236--58045284	20	2.5	19	81	12	55	59	0	4	36	1.17
58047962--58048013	24	2.2	24	89	0	77	55	9	1	32	1.43
58049932--58049982	24	2.1	24	88	0	75	56	9	1	31	1.43
58050761--58050800	20	2.1	19	85	4	53	25	40	17	17	1.91
58051786--58051845	30	2.0	31	83	3	77	20	38	0	41	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58051930--58051960	16	1.9	16	93	0	53	25	29	0	45	1.54
58052489--58052571	27	2.9	27	77	13	87	57	0	2	39	1.12
58052485--58052572	9	9.4	9	71	11	52	60	0	2	37	1.10
58054714--58054787	33	2.2	34	90	4	116	44	9	10	35	1.72
58056637--58056661	5	5.0	5	100	0	50	40	0	0	60	0.97
58065727--58065760	15	2.3	15	100	0	68	47	17	17	17	1.84
58073525--58073558	5	6.8	5	100	0	68	20	0	0	79	0.73
58074581--58074621	20	2.2	19	86	8	57	36	2	0	60	1.10
58074579--58074661	20	4.1	20	66	18	55	34	2	0	62	1.08
58078412--58078555	43	3.3	43	73	3	119	38	19	18	24	1.93
58083408--58083759	176	2.0	176	94	0	623	31	19	13	36	1.89
58095877--58095942	13	5.1	13	72	7	53	33	4	24	37	1.76
58099579--58099626	23	2.2	22	85	7	62	56	4	2	37	1.30
58101217--58101256	13	3.2	13	86	13	57	52	0	0	47	1.00
58103842--58103911	22	3.0	24	64	19	58	34	17	27	21	1.95
58104058--58104170	57	2.0	56	89	1	172	38	9	22	29	1.86
58104929--58105825	448	2.0	445	97	0	1704	37	14	24	23	1.92
58110467--58110549	15	5.5	15	80	12	73	13	0	40	45	1.43
58110475--58110552	8	10.1	8	77	15	51	15	0	41	43	1.46
58110425--58110550	7	16.9	7	74	13	76	14	2	42	41	1.58
58110533--58110595	29	2.2	29	82	0	72	23	1	23	50	1.58
58110540--58110585	22	2.1	22	92	8	76	26	0	19	54	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58110822--58110863	21	1.9	21	85	9	57	61	4	9	23	1.45
58111030--58111445	115	3.6	113	78	8	383	24	13	20	42	1.88
58111030--58111445	114	3.6	115	79	4	408	24	13	20	42	1.88
58111609--58111650	15	2.7	16	81	7	50	16	45	2	35	1.61
58111662--58111699	8	4.6	8	90	3	58	31	50	0	18	1.47
58111597--58111695	40	2.5	40	78	4	94	25	43	1	30	1.61
58115543--58115584	17	2.6	16	88	3	57	52	4	7	35	1.50
58135784--58135976	18	10.7	18	84	2	226	36	21	21	20	1.95
58135784--58135976	54	3.6	54	84	2	253	36	21	21	20	1.95
58149615--58149680	25	2.6	25	80	0	78	30	15	7	46	1.73
58154130--58154205	26	2.9	26	82	3	82	42	11	15	30	1.83
58155370--58155416	24	1.9	25	82	4	60	42	4	25	27	1.73
58156492--58156620	50	2.5	53	75	8	129	41	14	12	31	1.83
58156620--58156685	34	1.9	35	84	6	91	48	10	13	27	1.75
58156598--58156688	33	2.8	34	79	12	102	46	10	13	29	1.77
58160497--58160536	14	2.9	13	85	10	53	50	10	0	40	1.36
58160462--58160528	34	1.9	35	87	3	100	52	8	2	35	1.48
58164334--58164384	18	2.8	18	81	0	57	25	17	29	27	1.98
58167341--58167386	24	1.9	24	90	0	74	50	8	4	36	1.53
58169275--58169326	24	2.2	24	89	0	77	53	7	3	34	1.48
58180108--58180146	20	2.0	20	90	10	62	15	17	5	61	1.51
58180393--58180491	50	2.0	50	88	4	146	18	33	24	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58181496--58181663	74	2.3	75	82	6	191	45	9	3	41	1.54
58184419--58184463	16	2.9	15	86	6	54	8	0	6	84	0.78
58186252--58186294	19	2.3	18	85	14	61	67	0	2	30	1.03
58188534--58188652	34	3.5	33	82	6	134	44	0	12	42	1.48
58188710--58188975	126	2.1	126	82	5	315	38	16	16	29	1.90
58190562--58190618	26	2.3	24	79	11	62	59	1	5	33	1.30
58190635--58190674	13	2.8	13	85	14	53	60	0	0	40	0.97
58193046--58193431	126	3.1	126	89	2	562	28	17	18	36	1.93
58193498--58193626	34	3.8	34	83	4	163	46	14	0	37	1.51
58199522--58199552	3	10.3	3	100	0	62	32	0	0	67	0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240