genome.fa.s24.2.7.7.80.10.50.1000.186.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  186  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57220265--57220607	45	7.6	45	95	2	600	33	16	22	27	1.95
57220265--57220607	91	3.8	90	96	1	600	33	16	22	27	1.95
57220265--57220607	136	2.5	136	97	1	636	33	16	22	27	1.95
57221354--57221392	14	2.8	14	84	0	60	53	2	10	33	1.48
57221217--57221723	126	4.0	125	82	4	574	38	14	17	29	1.90
57221231--57221722	250	2.0	251	84	2	650	38	15	17	28	1.90
57223296--57223715	209	2.0	209	98	0	804	37	8	18	34	1.82
57223888--57223958	5	13.8	5	75	19	58	39	0	4	56	1.19
57223916--57223958	19	2.3	19	92	8	70	41	0	0	58	0.98
57223888--57223959	24	3.1	23	78	9	76	40	0	4	55	1.19
57223963--57224002	18	2.2	19	90	4	64	80	2	15	2	0.93
57224872--57224986	44	2.6	44	85	2	149	35	13	22	27	1.92
57224872--57225005	46	3.0	45	82	4	153	35	14	23	26	1.93
57227388--57227415	13	2.2	13	100	0	56	21	7	25	46	1.76
57228911--57229330	209	2.0	209	99	0	822	37	8	19	34	1.83
57229504--57229575	5	14.8	5	74	21	64	38	0	4	56	1.18
57229533--57229575	19	2.3	19	92	8	70	41	0	0	58	0.98
57229580--57229619	18	2.2	19	90	4	64	80	2	15	2	0.93
57230489--57230603	44	2.6	44	85	2	149	35	13	22	27	1.92
57230489--57230622	46	3.0	45	82	4	153	35	14	23	26	1.93
57232833--57232887	19	2.9	19	71	15	51	38	16	3	41	1.66
57235338--57235393	19	2.9	19	70	15	53	37	19	3	39	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57237278--57237342	27	2.4	27	94	0	112	41	20	7	30	1.80
57238920--57238965	5	9.2	5	90	0	74	34	0	4	60	1.16
57240114--57240199	21	4.0	22	85	8	115	16	19	24	39	1.91
57240113--57240199	44	2.0	41	86	6	120	17	19	24	39	1.92
57241337--57241367	16	1.9	16	93	0	53	48	6	0	45	1.28
57241606--57241650	24	2.0	23	82	8	56	26	20	28	24	1.99
57242581--57242638	28	2.1	28	100	0	116	50	3	3	43	1.36
57242581--57242629	16	3.3	16	67	21	52	51	4	4	40	1.40
57246226--57246259	3	11.3	3	100	0	68	67	0	32	0	0.91
57254253--57254298	24	1.9	24	100	0	92	34	21	13	30	1.91
57259697--57259754	23	2.4	24	80	5	64	65	3	6	24	1.33
57259738--57259786	18	2.5	20	77	16	57	63	8	2	26	1.34
57259745--57259778	18	1.9	17	94	5	59	67	8	0	23	1.18
57262870--57262900	15	2.1	15	100	0	62	32	19	19	29	1.96
57263386--57263414	8	3.6	8	100	0	58	75	0	0	24	0.80
57269981--57270044	23	2.6	26	82	7	73	50	26	1	21	1.58
57270390--57270509	61	2.0	61	83	3	152	37	18	5	39	1.73
57274009--57274062	25	2.1	26	83	10	67	3	12	3	79	1.00
57285859--57285915	23	2.5	23	86	8	73	14	7	40	38	1.73
57286407--57286497	34	2.7	35	79	5	105	41	14	1	42	1.52
57288242--57288288	17	2.8	16	79	17	51	76	0	4	19	0.95
57291131--57291190	30	1.9	32	86	6	88	43	0	36	20	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57291294--57291354	30	2.0	31	90	3	97	36	0	44	19	1.51
57291402--57291438	9	4.1	9	89	0	56	29	10	10	48	1.72
57291492--57291522	9	3.4	9	90	0	53	38	22	12	25	1.90
57299157--57299192	4	9.0	4	100	0	72	75	0	0	25	0.81
57300546--57300598	23	2.4	22	76	20	56	9	18	1	69	1.25
57300593--57300644	27	1.9	27	88	0	77	7	26	1	63	1.32
57302965--57302992	4	7.0	4	100	0	56	75	0	0	25	0.81
57312180--57312236	25	2.4	23	77	11	69	40	14	0	45	1.44
57317161--57317195	18	1.9	18	100	0	70	34	28	20	17	1.95
57317429--57317454	9	2.9	9	100	0	52	11	34	19	34	1.88
57319904--57320038	52	2.6	52	91	1	216	45	5	9	39	1.61
57320006--57320104	14	7.3	14	84	6	132	47	6	6	40	1.53
57320003--57320107	13	7.9	13	84	7	122	48	6	6	38	1.56
57320003--57320104	27	3.8	27	93	1	170	47	6	6	39	1.57
57321498--57321581	28	3.0	28	91	0	141	45	29	4	20	1.71
57323920--57324016	48	2.0	48	100	0	194	50	18	4	26	1.65
57333999--57334029	15	2.1	15	100	0	62	25	41	6	25	1.79
57334529--57334580	15	3.2	15	73	19	50	51	3	0	44	1.19
57335980--57336017	17	2.1	19	90	9	62	23	2	0	73	0.95
57348542--57348813	135	2.0	135	95	0	490	27	14	16	41	1.88
57356177--57356325	41	3.6	40	90	3	226	24	26	19	29	1.98
57365339--57365386	22	2.2	21	82	13	62	62	2	2	33	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57366906--57366940	18	1.9	18	88	11	54	40	8	0	51	1.33
57367652--57367698	23	2.0	23	95	0	85	29	12	19	38	1.89
57368494--57368540	22	2.1	22	88	0	67	14	21	48	14	1.80
57378614--57378671	28	2.1	28	96	0	107	37	0	18	43	1.51
57379078--57379143	25	2.6	25	95	0	114	53	3	19	24	1.60
57382058--57382227	59	2.9	56	82	7	171	50	8	4	37	1.52
57414213--57414255	2	21.5	2	100	0	86	0	0	48	51	1.00
57434205--57434247	2	21.5	2	100	0	86	0	0	48	51	1.00
57438086--57438142	22	2.5	22	82	2	60	49	5	8	36	1.57
57438303--57438342	16	2.5	16	83	0	53	40	0	17	42	1.49
57438335--57438375	21	2.0	21	95	0	73	65	12	0	21	1.25
57443504--57443557	22	2.5	22	75	0	54	57	11	14	16	1.65
57447341--57447395	21	2.6	21	91	0	92	21	9	40	29	1.84
57447475--57447539	32	2.0	32	100	0	130	43	3	12	41	1.58
57447481--57447533	16	3.3	16	75	19	65	47	1	13	37	1.54
57447689--57447740	22	2.3	22	77	9	52	50	5	1	42	1.37
57448339--57448577	29	8.2	29	93	2	410	38	9	0	50	1.41
57448339--57448577	59	4.1	58	94	3	410	38	9	0	50	1.41
57448623--57448713	45	2.0	44	89	6	139	9	50	3	36	1.52
57448647--57448713	14	4.5	15	74	18	52	11	47	1	38	1.50
57449769--57449832	29	2.2	30	83	8	78	48	0	3	48	1.17
57451358--57451388	15	2.1	14	94	5	53	29	0	6	64	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57465462--57465553	9	10.2	9	87	9	107	41	27	10	20	1.86
57465462--57465533	26	2.7	26	85	10	101	40	26	11	22	1.87
57465625--57465713	39	2.3	39	82	2	115	19	3	28	49	1.64
57465692--57465721	13	2.3	13	94	0	51	20	0	40	40	1.52
57466956--57467013	26	2.1	28	84	9	75	51	3	37	6	1.46
57467704--57467758	23	2.5	22	78	18	69	16	20	20	43	1.88
57467821--57467859	16	2.4	16	86	0	60	43	2	30	23	1.67
57468052--57468081	15	2.0	15	93	0	51	36	13	26	23	1.92
57470736--57471171	114	3.8	114	93	0	710	31	18	24	25	1.98
57470739--57471533	228	3.6	228	74	10	802	31	18	24	25	1.97
57471083--57471263	92	2.0	93	94	1	319	34	19	22	23	1.97
57470969--57471377	206	2.0	207	94	1	723	32	18	23	25	1.97
57471176--57471535	114	3.2	114	90	3	575	32	18	23	25	1.97
57470855--57471491	320	2.0	321	94	0	1107	32	18	23	25	1.97
57472670--57472912	83	2.9	82	85	7	285	31	16	20	31	1.95
57474364--57474414	24	2.2	23	89	3	75	45	3	5	45	1.46
57474384--57474670	28	9.8	28	68	23	132	41	4	6	47	1.50
57474484--57474532	22	2.2	23	88	3	73	48	4	4	42	1.40
57474340--57474949	120	5.0	124	87	8	834	40	5	6	47	1.52
57474662--57474698	13	2.8	13	87	0	56	45	2	0	51	1.15
57474735--57474783	22	2.2	23	88	3	73	48	4	4	42	1.40
57474427--57474961	251	2.1	253	94	2	952	41	5	5	47	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57474753--57474921	28	5.8	28	70	19	107	42	4	5	47	1.47
57474675--57474949	118	2.3	118	91	4	430	41	5	5	47	1.49
57475776--57475809	14	2.3	15	90	5	52	20	26	0	52	1.46
57476263--57476325	31	2.0	31	96	0	117	47	6	19	26	1.73
57477546--57477638	17	5.9	17	71	14	74	37	4	6	51	1.47
57477539--57477595	30	1.9	30	92	0	96	33	7	3	56	1.43
57477539--57477591	13	3.8	13	77	18	52	33	7	3	54	1.46
57477588--57477621	16	2.1	16	100	0	68	47	0	5	47	1.26
57477587--57477624	16	2.5	15	91	8	67	42	0	5	52	1.24
57477665--57477787	15	7.9	15	66	20	65	52	15	1	30	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240