genome.fa.s24.2.7.7.80.10.50.1000.220.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  220  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66457032--66457064	18	1.9	17	88	11	50	48	0	15	36	1.45
66458544--66458644	45	2.2	45	91	3	159	20	15	19	43	1.88
66465994--66466027	17	2.0	17	94	0	59	44	50	0	5	1.26
66470632--66470665	17	2.0	17	94	0	59	44	50	0	5	1.26
66473209--66473258	17	2.7	20	78	18	70	10	0	44	46	1.37
66477848--66477897	17	2.7	20	78	18	70	10	0	44	46	1.37
66482099--66482235	40	3.5	40	75	8	138	37	23	18	20	1.94
66482275--66482505	41	5.7	41	92	1	360	18	21	29	31	1.97
66482949--66482990	20	2.0	20	90	4	66	16	0	38	45	1.48
66482951--66482990	13	2.9	14	85	11	55	17	0	35	47	1.48
66482858--66482990	7	18.7	7	72	11	74	20	0	34	45	1.51
66489625--66489697	36	2.0	36	100	0	146	21	24	28	24	1.99
66499148--66499208	24	2.6	23	71	5	59	39	24	4	31	1.77
66502031--66502069	8	4.9	8	84	12	53	35	2	0	61	1.10
66502140--66502172	3	11.0	3	100	0	66	33	0	0	66	0.92
66502208--66502259	25	2.0	26	85	3	70	32	5	1	59	1.32
66502667--66502696	13	2.3	13	94	0	51	33	0	0	66	0.92
66506375--66506413	16	2.5	15	84	12	51	82	15	2	0	0.79
66508357--66509292	132	7.1	132	92	1	1518	27	18	24	29	1.98
66514422--66514449	14	2.0	14	100	0	56	35	7	14	42	1.73
66514596--66514735	71	1.9	72	91	2	228	36	18	15	29	1.92
66515299--66515371	33	2.3	29	75	18	74	53	5	6	34	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66515303--66515365	33	1.9	33	90	0	99	52	4	7	34	1.52
66516983--66517080	40	2.5	40	81	0	106	38	21	17	22	1.93
66517176--66517512	41	8.2	41	83	4	385	19	21	27	31	1.97
66517175--66517512	123	2.7	123	86	1	464	19	21	27	31	1.98
66517972--66518027	22	2.5	22	91	5	87	21	0	39	39	1.54
66522552--66522585	16	2.1	16	88	0	50	35	0	8	55	1.31
66522659--66523012	43	8.3	43	85	1	417	25	16	28	29	1.97
66522659--66523005	129	2.7	128	85	3	466	25	16	28	28	1.97
66523451--66523613	44	3.7	44	77	4	166	28	24	18	28	1.98
66523941--66524125	50	3.7	50	83	2	228	27	16	20	35	1.94
66523914--66524156	100	2.4	100	87	0	342	27	18	18	34	1.95
66523961--66524161	50	4.0	49	79	3	195	26	19	19	33	1.96
66524199--66524685	44	10.9	45	72	10	356	23	22	25	28	1.99
66524187--66524685	267	1.9	266	86	1	721	23	22	25	29	1.99
66524187--66524685	89	5.6	89	85	0	633	23	22	25	29	1.99
66530318--66530452	70	1.9	72	84	3	184	35	17	17	30	1.92
66531120--66531159	3	13.3	3	100	0	80	67	0	0	32	0.91
66532090--66532385	148	2.0	147	97	0	565	47	15	11	25	1.79
66548646--66548695	17	2.7	20	78	18	70	10	0	44	46	1.37
66553284--66553333	17	2.7	20	78	18	70	10	0	44	46	1.37
66559420--66559449	16	1.9	16	93	6	53	23	13	0	63	1.29
66561158--66561216	30	2.0	30	100	0	118	40	6	20	32	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66579139--66579212	29	2.5	29	86	4	94	50	14	14	20	1.78
66583458--66583491	17	1.9	18	88	5	52	50	8	5	35	1.58
66583529--66583575	25	2.0	23	83	8	58	57	4	2	36	1.30
66583876--66583905	16	1.9	16	93	6	53	50	0	0	50	1.00
66591469--66591497	10	2.9	10	100	0	58	20	10	10	58	1.60
66596720--66596751	8	4.0	8	95	0	55	84	0	0	15	0.63
66596745--66596784	16	2.5	16	100	0	80	72	7	5	15	1.24
66597499--66598477	82	11.9	82	94	0	1690	22	20	24	32	1.98
66598448--66598704	130	2.0	131	86	4	358	26	22	20	30	1.98
66598832--66599181	86	4.1	86	86	0	475	25	23	22	28	2.00
66598833--66599175	172	2.0	173	89	1	528	25	23	23	27	2.00
66599612--66599819	108	1.9	108	79	5	235	47	10	16	25	1.79
66601958--66602022	21	3.1	21	70	24	64	46	10	23	20	1.81
66601948--66602039	42	2.2	42	90	2	139	47	9	22	19	1.78
66605141--66605180	8	5.0	8	84	0	53	80	0	0	20	0.72
66605141--66605176	16	2.2	16	95	0	63	77	0	0	22	0.76
66607814--66607856	18	2.4	18	96	0	77	30	16	30	23	1.96
66607908--66607948	21	2.0	21	100	0	82	24	53	17	4	1.63
66609772--66609824	24	2.2	25	80	12	67	54	16	0	28	1.43
66611474--66611515	14	3.0	14	100	0	84	35	21	7	35	1.81
66615289--66615443	78	2.0	78	96	0	283	29	27	11	31	1.92
66616618--66616659	14	3.0	14	100	0	84	35	21	7	35	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66626782--66626874	18	5.2	18	88	0	141	32	16	23	27	1.96
66626782--66626874	36	2.6	36	92	0	159	32	16	23	27	1.96
66634124--66634165	21	2.0	21	90	0	66	19	26	21	33	1.97
66637495--66637560	24	2.7	24	77	13	62	50	3	0	46	1.16
66642725--66642787	23	2.8	23	81	9	60	60	1	0	38	1.07
66643988--66644044	28	2.0	28	100	0	114	38	3	22	35	1.72
66644371--66644400	11	2.6	11	94	5	51	60	0	0	40	0.97
66645080--66645116	13	2.7	14	91	4	58	37	10	8	43	1.69
66645904--66645978	28	2.7	28	87	0	96	30	22	26	20	1.98
66651040--66651097	26	2.2	26	78	6	64	20	3	25	50	1.64
66658930--66659140	52	4.1	52	83	4	257	25	18	16	39	1.91
66659090--66659206	61	1.9	61	92	0	198	25	18	15	40	1.90
66659460--66659485	5	5.2	5	100	0	52	0	19	0	80	0.71
66661768--66661843	40	1.9	39	86	7	109	42	19	10	27	1.84
66667157--66667201	22	2.0	22	86	0	63	28	17	17	35	1.93
66667344--66667391	25	1.9	25	87	8	71	25	16	18	39	1.91
66678296--66678353	22	2.4	25	75	13	59	50	37	1	10	1.47
66679901--66679956	26	2.2	26	83	6	69	33	7	0	58	1.25
66680135--66680182	21	2.3	20	82	7	60	27	18	4	50	1.65
66680237--66680518	109	2.6	109	92	1	469	28	17	21	33	1.96
66681886--66681929	19	2.3	20	84	7	56	27	20	11	40	1.86
66682428--66682464	17	2.1	18	90	5	58	29	24	0	45	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66683181--66683255	8	9.5	8	83	13	86	78	9	0	12	0.96
66683180--66683242	8	7.2	9	89	7	87	79	9	0	11	0.94
66683181--66683255	16	4.7	17	83	11	97	78	9	0	12	0.96
66683181--66683263	25	3.5	24	76	15	93	77	9	1	12	1.06
66683182--66683264	24	3.5	25	76	21	74	75	9	1	13	1.09
66683268--66683311	6	7.3	6	82	10	54	81	0	15	2	0.78
66683270--66683310	7	5.6	7	83	11	55	85	0	12	2	0.70
66683260--66683315	24	2.5	21	75	13	58	76	0	19	3	0.93
66685281--66685386	46	2.3	46	81	0	131	29	12	24	33	1.92
66685374--66685819	44	10.1	43	66	12	163	31	17	23	27	1.97
66685368--66685895	132	4.0	132	95	0	930	30	18	23	27	1.97
66686415--66686472	22	2.4	25	75	13	59	50	37	1	10	1.47
66688016--66688071	26	2.2	26	83	6	69	33	7	0	58	1.25
66688249--66688296	21	2.3	20	82	7	60	27	18	4	50	1.65
66688339--66688734	109	3.7	103	92	4	548	28	16	21	33	1.95
66691812--66691837	5	5.2	5	100	0	52	38	19	19	23	1.93
66692481--66692540	30	2.0	31	86	3	86	40	0	38	21	1.54
66692653--66692715	30	2.1	30	84	0	81	38	0	38	23	1.55
66692678--66692738	30	2.0	30	81	12	72	44	0	31	24	1.54
66692752--66692788	9	4.1	9	89	0	56	32	10	10	45	1.74
66697656--66698024	102	3.4	103	83	7	364	30	21	20	27	1.98
66697824--66698368	114	4.8	110	76	8	420	31	20	20	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66697619--66698368	113	6.7	113	77	8	526	30	20	20	28	1.98
66698592--66698645	21	2.6	21	80	11	65	14	0	48	37	1.45
66698783--66698809	14	1.9	14	100	0	54	14	0	37	48	1.45
66698852--66698889	18	2.1	18	95	0	67	57	0	2	39	1.12
66699558--66699582	13	1.9	13	100	0	50	32	16	20	32	1.94
66701619--66702113	121	4.1	121	91	2	642	39	9	4	47	1.55
66702266--66702724	9	54.2	9	71	15	304	45	21	2	31	1.64
66702270--66702724	25	18.0	25	71	14	148	45	21	2	31	1.64
66702266--66702610	41	8.5	42	72	16	246	44	21	2	31	1.63
66702271--66702576	34	9.5	33	73	16	214	45	21	1	32	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240