genome.fa.s24.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  113  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35171843--35171954	35	3.0	37	74	18	115	33	22	17	25	1.96
35178420--35178760	170	2.0	170	99	0	673	33	18	12	35	1.88
35184248--35184283	13	2.9	12	88	8	54	41	22	8	27	1.82
35198068--35198108	22	1.9	21	85	5	55	60	4	21	12	1.50
35199582--35199614	18	1.9	17	88	11	50	60	6	9	24	1.49
35200156--35200228	31	2.3	33	79	11	89	35	1	1	61	1.13
35203605--35203647	17	2.5	17	80	3	50	60	4	2	32	1.30
35205679--35205881	82	2.6	79	90	3	311	49	17	6	25	1.71
35205951--35206380	160	2.7	157	82	7	496	33	13	15	37	1.87
35207250--35207367	54	2.2	54	89	0	173	25	50	3	21	1.64
35209574--35209612	9	4.1	9	86	3	51	20	2	7	69	1.26
35209641--35209679	17	2.2	18	86	9	53	28	2	2	66	1.18
35209834--35210036	101	2.0	100	97	1	381	39	17	13	29	1.88
35210471--35210525	23	2.2	25	84	15	71	30	0	1	67	1.01
35219967--35220000	16	2.1	16	89	10	52	41	0	0	58	0.98
35223550--35223775	114	2.0	113	95	0	407	34	20	14	30	1.93
35225700--35225914	106	2.0	106	92	1	360	32	15	18	33	1.92
35226620--35227083	23	19.7	23	74	5	381	42	17	14	25	1.87
35226626--35227083	71	6.5	71	90	0	695	41	17	14	25	1.88
35226626--35227083	141	3.2	141	93	0	736	41	17	14	25	1.88
35226626--35227083	48	9.7	47	74	7	360	41	17	14	25	1.88
35228125--35228205	28	3.0	24	75	20	72	30	23	12	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35228134--35228205	28	2.6	28	90	0	108	29	26	12	31	1.93
35232236--35232364	70	1.9	67	88	4	195	39	13	14	32	1.85
35244318--35244410	33	2.8	33	85	3	116	43	15	22	19	1.88
35247845--35247937	39	2.4	39	85	3	116	21	8	29	40	1.83
35248008--35248624	26	23.6	26	77	5	490	22	17	21	38	1.93
35248026--35248088	31	2.0	31	84	6	83	23	23	22	30	1.99
35271085--35271133	26	1.9	26	87	4	73	30	14	12	42	1.82
35272764--35273031	27	9.9	26	86	5	286	42	17	17	22	1.89
35272758--35273031	54	5.0	54	83	5	329	41	17	17	22	1.90
35272758--35273031	81	3.4	79	82	6	316	41	17	17	22	1.90
35273227--35273297	26	2.7	26	91	0	106	14	19	23	42	1.88
35273229--35273305	26	3.0	26	86	3	102	15	19	22	42	1.88
35273390--35273474	28	3.0	28	87	0	116	21	21	23	34	1.97
35273390--35273501	28	3.8	28	80	10	91	22	22	23	32	1.98
35275372--35275411	10	3.8	10	81	12	53	40	2	2	55	1.27
35280486--35280547	29	2.1	29	81	0	70	25	17	17	38	1.92
35291357--35291450	48	2.0	48	97	0	179	35	6	20	38	1.78
35291728--35291978	32	7.6	34	81	8	286	18	23	16	41	1.90
35291749--35291968	99	2.2	98	89	5	329	18	24	17	39	1.92
35291749--35291978	67	3.5	67	86	5	292	18	23	16	40	1.90
35294760--35294803	20	2.1	22	84	16	58	13	9	9	68	1.40
35302476--35302520	23	2.0	23	82	8	56	66	4	24	4	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35302476--35302526	24	2.2	23	82	3	57	68	3	21	5	1.27
35305596--35305700	55	1.9	55	88	3	158	23	5	15	55	1.62
35305612--35305733	55	2.3	52	80	13	124	22	6	14	56	1.61
35309038--35309071	12	2.8	12	86	4	50	0	8	8	82	0.85
35317541--35317573	10	3.0	11	86	13	50	45	18	9	27	1.79
35327126--35327169	21	2.0	22	91	4	72	50	0	43	6	1.29
35330224--35330362	39	3.6	39	90	0	197	43	17	5	33	1.72
35330255--35330319	22	3.2	21	66	20	57	49	20	3	27	1.64
35330274--35330335	17	3.4	17	70	20	52	48	20	1	29	1.59
35331936--35332028	32	2.9	32	98	0	177	52	24	4	18	1.63
35331937--35332022	18	5.2	18	68	21	80	51	25	4	18	1.66
35343483--35343771	125	2.3	125	87	2	427	34	19	18	27	1.95
35344302--35344347	24	1.9	24	86	0	65	39	19	21	19	1.93
35344648--35344926	123	2.2	124	91	1	452	33	19	19	27	1.96
35345520--35345576	7	8.3	7	81	11	73	15	0	38	45	1.47
35345524--35345576	13	3.9	13	80	9	70	15	0	39	45	1.46
35345750--35346034	123	2.3	125	86	4	398	34	19	18	27	1.96
35350367--35350399	14	2.3	15	85	15	52	60	12	0	27	1.32
35351503--35351532	15	2.1	14	93	6	51	76	0	0	23	0.78
35351573--35351630	21	2.6	23	76	20	61	46	0	32	20	1.51
35351575--35351632	11	5.4	10	80	10	62	48	0	31	20	1.50
35352340--35352378	18	2.1	18	85	9	51	41	2	12	43	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35361873--35361907	14	2.4	15	90	4	54	28	0	0	71	0.86
35362698--35362745	19	2.5	20	83	10	64	58	0	6	35	1.23
35364417--35364500	38	2.2	38	86	0	123	34	9	15	40	1.80
35364417--35364520	38	2.7	38	82	2	93	31	11	17	39	1.85
35364647--35364780	43	3.1	43	81	1	133	25	18	20	35	1.95
35364712--35364874	44	3.8	44	76	5	125	24	17	17	39	1.91
35365734--35365960	91	2.5	90	81	6	257	34	20	11	34	1.88
35366093--35366118	10	2.6	10	100	0	52	53	0	0	46	1.00
35366308--35366362	28	2.0	28	96	0	101	38	0	3	58	1.16
35366313--35366375	28	2.2	27	86	10	90	38	1	3	57	1.24
35373649--35373772	61	2.0	61	100	0	248	29	14	6	50	1.68
35383178--35383211	4	8.5	4	100	0	68	26	0	26	47	1.53
35384674--35384708	7	5.0	7	96	0	61	40	0	2	57	1.14
35385032--35385095	8	7.6	8	75	13	58	73	1	3	21	1.06
35385033--35385061	15	1.9	15	100	0	58	75	3	0	20	0.94
35385043--35385095	27	1.9	28	81	11	65	73	1	3	20	1.08
35385375--35385451	18	4.4	16	80	16	75	31	1	0	67	0.99
35385375--35385451	8	8.8	9	83	14	83	31	1	0	67	0.99
35385562--35385617	28	2.0	29	85	3	78	23	5	3	67	1.27
35385584--35385626	19	2.2	20	84	12	63	23	4	4	67	1.28
35386416--35386454	19	2.1	19	100	0	78	41	5	10	43	1.61
35388285--35388558	41	6.6	42	88	6	348	16	20	31	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35388285--35388558	82	3.3	82	88	2	390	16	20	31	32	1.94
35388285--35388558	123	2.2	123	87	3	390	16	20	31	32	1.94
35388929--35389017	7	12.6	7	71	2	61	22	3	26	47	1.67
35388980--35389022	21	2.0	21	90	0	68	23	2	30	44	1.66
35389077--35389109	15	2.3	15	89	5	50	30	0	30	39	1.57
35389433--35389473	21	1.9	22	85	5	57	21	0	39	39	1.54
35390617--35390650	7	4.9	7	100	0	68	29	14	14	41	1.86
35394246--35394293	14	3.4	14	80	5	51	2	14	8	75	1.13
35395979--35396291	43	7.4	42	79	5	265	22	17	29	30	1.97
35396022--35396291	85	3.2	84	79	6	283	22	18	30	28	1.97
35402143--35402168	3	8.7	3	100	0	52	65	0	0	34	0.93
35410669--35410704	3	12.0	3	100	0	72	66	0	0	33	0.92
35413731--35413826	21	4.6	20	66	20	54	41	16	23	17	1.89
35413700--35413907	42	5.0	42	87	5	278	43	17	22	16	1.88
35413745--35413900	21	7.4	22	67	9	83	44	18	21	15	1.87
35416596--35416646	15	3.3	15	76	10	57	68	0	5	25	1.12
35416690--35416731	3	14.0	3	94	0	57	59	0	7	33	1.25
35418315--35419377	132	8.1	132	90	0	1534	27	25	19	27	1.99
35418648--35419377	44	16.6	44	64	6	233	27	25	19	27	1.99
35420696--35420742	7	6.7	7	85	9	69	12	17	0	70	1.17
35420690--35420745	21	2.6	22	86	13	82	14	16	0	69	1.19
35423640--35423690	22	2.3	22	100	0	102	17	19	29	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35425299--35425349	15	3.3	15	76	10	57	68	0	5	25	1.12
35426940--35426985	23	2.0	23	100	0	92	52	4	13	30	1.59
35438126--35438175	18	2.8	18	90	0	82	52	4	0	44	1.20
35442580--35442618	21	1.9	20	89	5	60	33	7	20	38	1.81
35458072--35458119	17	2.9	18	76	20	59	68	8	6	16	1.35
35461064--35461173	37	3.0	37	85	2	141	47	11	20	20	1.81
35461601--35461654	3	18.0	3	96	0	99	33	1	0	64	1.04
35463346--35463383	19	2.0	19	94	0	67	28	10	5	55	1.56
35476585--35476624	20	2.0	20	85	0	53	37	10	0	52	1.35
35478807--35478840	16	2.1	17	88	5	52	50	20	0	29	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240