genome.fa.s4.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  101  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31495181--31495222	17	2.4	18	80	7	52	57	4	23	14	1.56
31503023--31503069	20	2.3	20	85	0	67	29	36	12	21	1.91
31507402--31507447	20	2.3	20	84	0	56	23	19	17	39	1.92
31507394--31507467	30	2.5	30	84	8	80	22	20	18	37	1.94
31509997--31510093	30	3.2	30	75	2	106	26	27	16	28	1.97
31512525--31512568	22	2.0	22	90	0	70	36	4	34	25	1.76
31518314--31518351	20	1.9	20	94	0	67	52	23	10	13	1.71
31522955--31522998	22	2.0	22	95	0	79	34	4	36	25	1.76
31525094--31525158	20	3.3	19	73	16	51	38	16	21	23	1.93
31525759--31525862	18	5.6	18	71	10	66	71	3	17	7	1.25
31525755--31525862	6	17.7	6	69	10	58	71	3	17	7	1.24
31525823--31525860	13	2.8	13	82	17	51	73	0	18	7	1.06
31525741--31525860	12	10.0	12	69	19	63	70	3	17	9	1.28
31525824--31525874	21	2.4	21	74	6	50	74	1	17	5	1.11
31525877--31525939	33	1.9	33	84	12	85	55	6	25	12	1.60
31528271--31528367	30	3.2	30	70	8	90	27	16	27	27	1.97
31534150--31534203	24	2.2	25	78	15	60	11	22	3	62	1.43
31538774--31538811	17	2.2	17	90	0	58	42	23	0	34	1.55
31538801--31538852	27	1.9	27	84	7	70	13	23	0	63	1.29
31538820--31538861	19	2.2	20	86	4	59	7	26	0	66	1.17
31539722--31539791	30	2.3	30	90	2	104	8	10	2	78	1.06
31539837--31539866	11	2.7	11	94	0	51	13	3	3	80	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31539848--31539883	17	2.1	17	94	0	63	8	5	2	83	0.89
31539832--31539895	28	2.3	28	89	10	96	10	3	3	82	0.89
31567669--31567695	13	2.1	13	100	0	54	25	0	0	74	0.83
31571186--31571258	34	2.2	34	87	7	105	9	8	2	79	1.03
31571304--31571365	13	4.8	13	74	18	58	12	3	3	80	0.95
31571317--31571354	16	2.4	16	95	0	67	13	5	2	78	1.02
31571317--31571359	16	2.5	17	88	7	61	13	4	2	79	1.00
31571298--31571365	28	2.5	29	88	9	99	16	5	2	75	1.13
31575108--31575257	27	5.6	27	82	3	167	27	14	28	29	1.95
31579697--31579752	12	4.7	12	74	14	53	64	0	23	12	1.27
31581958--31582309	27	13.1	27	82	2	318	39	19	10	30	1.85
31581962--31582201	54	4.4	54	90	0	381	40	19	7	32	1.79
31581962--31582309	54	6.5	53	85	4	376	39	19	10	30	1.85
31582105--31582366	81	3.2	80	82	6	262	37	19	14	28	1.91
31582156--31582404	27	9.2	27	86	2	268	36	18	17	26	1.93
31582756--31582814	22	2.7	22	78	5	57	20	25	22	32	1.98
31583202--31583339	6	22.8	6	72	12	95	21	18	13	47	1.82
31583202--31583328	37	3.5	37	90	2	159	22	18	12	47	1.81
31583179--31583330	31	4.5	31	77	16	124	21	17	11	49	1.78
31584339--31584435	30	3.2	30	75	2	106	28	26	15	28	1.96
31588131--31588172	19	2.2	19	95	0	75	30	30	16	21	1.95
31589732--31589808	30	2.6	30	75	8	84	28	16	25	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31592822--31592869	15	3.3	15	73	5	53	43	25	0	31	1.55
31594841--31594866	9	2.9	9	100	0	52	65	11	11	11	1.48
31597671--31597715	14	3.3	14	78	6	56	35	0	15	48	1.45
31598562--31598608	20	2.3	20	81	0	58	27	36	14	21	1.93
31600496--31600561	21	3.0	22	84	4	71	30	4	28	36	1.77
31602075--31602109	17	1.9	19	88	11	56	68	11	5	14	1.37
31603131--31603176	18	2.5	19	79	6	51	65	2	26	6	1.28
31605597--31605641	14	3.3	14	78	6	56	35	0	15	48	1.45
31606610--31606669	29	2.1	29	93	0	102	41	30	0	28	1.56
31606616--31606663	15	3.3	15	73	5	53	43	27	0	29	1.55
31610016--31610075	29	2.1	29	90	0	93	41	28	0	30	1.56
31610022--31610069	15	3.3	15	73	5	53	43	25	0	31	1.55
31610291--31610335	12	3.7	12	79	5	54	77	6	4	11	1.09
31610302--31610335	14	2.5	13	90	4	50	79	5	2	11	1.02
31610314--31610348	17	2.0	18	88	5	54	77	5	5	11	1.12
31610314--31610348	16	2.1	16	89	10	52	77	5	5	11	1.12
31611378--31611433	30	1.9	28	85	7	76	53	3	30	12	1.55
31615658--31615717	29	2.1	29	90	0	93	41	28	0	30	1.56
31615664--31615711	15	3.3	15	73	5	53	43	25	0	31	1.55
31621755--31621851	30	3.2	30	77	2	115	27	28	14	28	1.95
31623857--31623953	30	3.2	30	76	2	106	27	16	27	27	1.97
31626835--31626912	24	3.1	23	74	20	68	71	2	17	7	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31629867--31629905	19	2.0	20	85	5	53	30	15	28	25	1.96
31631958--31632001	22	2.0	22	95	0	79	25	36	4	34	1.76
31632300--31632333	12	2.8	12	90	0	59	73	0	0	26	0.83
31639696--31639801	48	2.2	48	85	9	137	14	24	1	59	1.45
31642410--31642456	20	2.3	20	85	0	67	21	12	36	29	1.91
31643020--31643061	18	2.3	18	87	0	57	80	2	9	7	0.97
31645577--31645628	20	2.5	19	78	12	50	76	3	13	5	1.10
31645590--31645643	17	3.2	17	75	0	54	74	3	12	9	1.20
31645575--31645684	17	6.9	15	69	18	53	71	3	18	6	1.22
31649883--31649949	21	3.1	21	82	4	71	34	32	2	29	1.73
31653984--31654027	22	2.0	22	95	0	79	25	36	4	34	1.76
31658643--31658687	14	3.3	14	78	6	56	35	0	15	48	1.45
31663546--31663595	15	3.5	14	81	10	57	76	2	20	2	0.99
31669961--31669996	18	2.0	18	100	0	72	22	16	27	33	1.95
31671991--31672074	28	3.2	27	65	25	72	25	16	28	29	1.97
31671888--31672118	50	4.7	49	86	4	313	26	17	25	30	1.97
31671888--31672118	99	2.3	99	87	2	340	26	17	25	30	1.97
31673365--31673403	13	2.8	13	88	7	51	5	20	2	71	1.17
31675014--31675060	20	2.3	20	85	0	67	21	12	36	29	1.91
31676729--31676834	48	2.2	48	85	12	139	13	24	1	60	1.43
31676810--31676894	18	4.6	17	71	16	62	17	28	2	51	1.58
31677860--31677897	10	3.7	10	86	6	58	2	13	0	84	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31677854--31677914	21	2.8	20	85	9	77	4	18	1	75	1.06
31681406--31681450	14	3.3	14	78	6	56	35	0	15	48	1.45
31685087--31685136	18	2.8	18	87	0	73	58	0	28	14	1.37
31689463--31689635	93	1.9	93	88	0	265	29	29	19	21	1.98
31693815--31693891	38	2.0	38	100	0	154	31	12	20	35	1.91
31694125--31694171	20	2.3	20	85	0	67	29	36	12	21	1.91
31696634--31696681	19	2.4	21	76	13	57	27	2	16	54	1.54
31714135--31714284	67	2.2	67	81	8	171	32	18	28	20	1.96
31714159--31714342	67	2.8	64	77	8	194	29	17	29	22	1.97
31717423--31717467	20	2.3	19	84	7	54	35	11	24	28	1.90
31718957--31718996	14	2.9	14	88	0	53	50	7	32	10	1.64
31720630--31720673	22	2.0	22	95	0	79	34	4	36	25	1.76
31728087--31728206	6	19.2	6	68	11	71	72	2	17	7	1.19
31728100--31728206	6	17.7	6	71	12	76	73	2	16	6	1.16
31728167--31728204	13	2.8	13	82	17	51	73	0	18	7	1.06
31728210--31728241	12	2.7	12	95	0	55	59	0	21	18	1.38
31732883--31732935	23	2.4	22	76	20	56	9	18	1	69	1.25
31735280--31735310	4	8.0	4	92	7	55	77	0	0	22	0.77
31742125--31742159	18	1.9	18	88	11	54	22	20	0	57	1.41
31743623--31743669	20	2.3	20	88	0	76	21	10	36	31	1.88
31745335--31745440	48	2.2	48	85	9	137	14	24	1	59	1.45
31746550--31746609	31	1.9	31	86	6	86	6	16	3	73	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31746593--31746635	22	2.0	22	86	4	61	16	4	6	72	1.24
31747424--31747477	18	3.1	18	79	12	67	18	22	0	59	1.38
31748914--31748955	20	2.1	20	86	0	57	21	11	35	30	1.90
31752889--31752928	14	2.9	14	88	0	53	50	7	32	10	1.64
31760375--31760471	30	3.2	30	76	2	106	27	16	27	27	1.97
31762684--31762765	30	2.7	30	81	9	87	9	21	2	65	1.34
31762768--31762798	12	2.6	12	94	0	53	29	12	12	45	1.80
31762846--31762907	5	12.0	5	77	19	65	1	17	1	79	0.90
31762846--31762914	16	4.6	14	77	15	66	1	17	2	78	0.95
31762848--31762919	15	4.8	14	78	14	56	1	18	2	77	0.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253