genome.fa.s4.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  142  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45526963--45527020	30	1.9	30	85	0	80	31	24	6	37	1.82
45533847--45534109	102	2.5	104	93	2	433	30	29	20	19	1.97
45534009--45534149	72	1.9	75	87	11	209	34	29	19	17	1.95
45534492--45534556	30	2.2	29	81	8	76	30	27	6	35	1.81
45534499--45534556	30	1.9	30	85	0	80	31	24	6	37	1.82
45537041--45537247	53	3.8	54	76	1	200	20	24	17	37	1.94
45539577--45539610	16	2.1	16	100	0	68	38	20	17	23	1.93
45541255--45542314	283	3.6	291	76	9	953	37	12	14	36	1.83
45541341--45542016	291	2.4	280	78	9	718	38	12	13	35	1.83
45543863--45544019	10	17.4	9	67	16	60	61	1	3	33	1.22
45543877--45543924	19	2.5	19	82	3	51	58	4	4	33	1.36
45543920--45543950	14	2.2	14	100	0	62	67	0	0	32	0.91
45543865--45544000	68	2.0	69	83	9	172	61	1	2	34	1.20
45543948--45543988	19	2.1	19	86	13	57	60	0	4	34	1.18
45543991--45544033	21	2.0	21	86	8	61	58	6	6	27	1.50
45544264--45544318	19	3.0	19	77	15	62	29	5	1	63	1.27
45544274--45544320	10	4.8	10	76	5	51	31	4	2	61	1.27
45544297--45544376	29	2.7	29	74	16	83	38	2	1	57	1.20
45544549--45544600	23	2.3	23	90	3	79	34	3	19	42	1.69
45546622--45546654	17	1.9	17	88	11	50	57	0	30	12	1.35
45547182--45547207	5	5.2	5	100	0	52	38	61	0	0	0.96
45558059--45558086	11	2.5	11	100	0	56	39	7	0	53	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45558025--45558111	45	1.9	45	100	0	174	34	8	11	45	1.70
45558436--45558482	21	2.3	21	85	3	60	25	21	12	40	1.89
45559053--45559111	11	4.9	12	76	13	50	69	0	3	27	1.04
45559035--45559079	20	2.2	20	84	7	56	73	2	2	22	1.05
45559062--45559103	14	3.1	14	86	6	61	69	0	4	26	1.08
45569011--45569069	21	2.8	22	80	7	61	22	0	8	69	1.15
45569040--45569089	26	2.0	24	88	7	73	30	0	6	64	1.18
45571127--45571261	69	2.0	68	85	7	184	18	19	22	40	1.92
45571213--45571314	52	1.9	53	86	2	143	21	19	17	41	1.91
45572787--45572958	93	1.8	93	96	0	317	27	29	21	20	1.98
45572780--45572955	46	3.8	46	79	12	216	28	29	21	20	1.98
45579864--45580035	93	1.8	93	96	0	317	27	29	21	20	1.98
45579857--45580032	46	3.8	46	79	12	216	28	29	21	20	1.98
45580860--45581106	69	3.6	69	84	0	307	15	20	23	40	1.90
45581125--45581274	69	2.2	68	79	2	156	18	21	23	37	1.94
45581657--45581901	69	3.6	69	85	0	294	15	20	24	40	1.91
45581926--45582075	69	2.2	68	79	2	156	18	21	23	37	1.94
45580601--45582204	801	2.0	801	99	0	3163	23	19	18	37	1.94
45600230--45600537	171	1.8	171	84	4	424	30	23	16	29	1.96
45600999--45601029	16	1.9	16	93	0	53	38	16	0	45	1.47
45603767--45603873	33	3.2	33	89	4	144	14	9	36	39	1.79
45609232--45609285	22	2.5	22	90	0	90	22	37	29	11	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45614022--45614060	19	2.1	19	85	0	51	28	15	41	15	1.87
45615967--45616001	7	5.0	7	100	0	70	28	0	0	71	0.86
45620329--45620403	19	3.9	20	75	16	77	36	2	0	61	1.10
45620348--45620412	17	3.6	17	75	19	51	38	1	0	60	1.07
45620376--45620434	26	2.3	26	85	5	75	42	3	0	54	1.17
45621838--45621881	22	1.9	23	86	9	63	56	4	6	31	1.46
45630015--45630085	26	2.7	26	86	0	88	25	29	18	26	1.98
45632877--45633206	144	2.3	144	86	4	452	25	30	17	25	1.97
45632877--45633193	48	6.6	48	81	4	361	25	30	17	25	1.97
45639651--45639698	23	2.0	23	84	8	60	20	14	8	56	1.64
45648630--45648660	14	2.2	14	100	0	62	41	22	0	35	1.54
45650007--45650131	43	2.9	44	82	7	159	29	28	16	26	1.96
45653396--45653501	31	3.5	31	93	3	180	17	41	31	9	1.82
45656152--45656260	50	2.2	50	94	1	191	43	12	11	32	1.80
45664371--45664474	54	1.9	54	82	3	129	21	16	37	25	1.93
45675358--45675409	26	2.0	26	82	10	63	59	1	0	38	1.08
45678290--45678348	23	2.6	22	79	10	66	44	20	1	33	1.62
45685790--45686298	256	2.0	256	99	0	1009	28	18	20	32	1.96
45692592--45692933	150	2.3	146	92	3	551	36	6	26	31	1.81
45692585--45692930	98	3.5	98	89	4	527	36	6	25	31	1.81
45692585--45692933	48	7.1	48	89	5	502	36	6	25	31	1.80
45699991--45700131	27	5.2	26	81	6	156	19	21	23	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45699991--45700131	54	2.6	54	87	2	212	19	21	23	35	1.96
45702784--45702837	26	2.1	26	89	0	81	53	12	14	18	1.72
45723798--45723922	40	3.1	41	83	5	157	44	27	14	14	1.84
45728420--45728461	11	3.7	11	79	17	50	38	30	19	11	1.88
45728398--45728472	23	3.3	23	81	1	80	40	28	17	14	1.89
45734076--45734173	42	2.3	42	83	0	124	27	21	23	27	1.99
45734076--45734356	43	6.6	42	76	6	230	29	19	21	29	1.98
45734076--45734375	85	3.5	85	78	6	259	29	19	20	31	1.97
45737292--45737351	23	2.8	22	80	7	70	1	25	6	66	1.25
45737719--45737861	49	2.9	49	87	0	196	31	13	18	37	1.89
45738063--45738155	24	3.9	24	90	2	134	37	3	7	51	1.46
45740812--45741001	85	2.2	86	87	1	265	29	24	22	24	1.99
45740812--45741186	43	8.6	44	83	5	372	29	23	19	26	1.98
45740812--45741178	132	2.8	132	85	3	413	30	22	19	27	1.98
45742065--45742102	19	2.1	18	85	9	51	52	0	7	39	1.31
45748847--45749098	133	1.9	133	97	0	477	51	18	9	20	1.74
45752396--45752447	21	2.4	22	80	3	61	44	44	0	11	1.40
45752901--45752976	39	2.0	38	87	7	111	40	22	5	31	1.76
45755011--45755132	22	5.3	22	62	21	61	25	29	11	33	1.91
45754983--45755269	47	6.3	47	86	8	355	27	31	9	32	1.88
45755164--45755237	37	2.0	37	100	0	148	29	29	8	32	1.86
45757749--45758195	41	11.0	41	85	2	515	20	22	22	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45758308--45758550	121	2.0	121	91	1	398	34	31	11	21	1.90
45758548--45758581	15	2.3	15	89	0	50	44	41	2	11	1.56
45759148--45759191	20	2.2	20	87	0	61	36	29	2	31	1.70
45759277--45759398	43	2.9	42	79	7	147	31	24	15	28	1.96
45769990--45770029	18	2.2	18	86	0	53	25	2	5	67	1.23
45770392--45770426	16	2.2	16	89	0	52	54	14	11	20	1.70
45770694--45770733	21	2.0	21	85	5	55	72	2	10	15	1.21
45772483--45772617	50	2.7	50	84	0	180	29	16	23	30	1.96
45774236--45774607	188	2.0	188	98	1	719	32	15	22	29	1.95
45775437--45775493	26	2.2	26	83	3	69	28	19	17	35	1.94
45782627--45782742	27	4.3	26	83	6	99	36	18	22	23	1.95
45782644--45782758	28	4.2	28	88	5	155	34	22	21	20	1.97
45782863--45782925	26	2.4	26	84	5	74	26	15	25	31	1.96
45790688--45790722	18	1.9	18	94	0	61	71	8	11	8	1.31
45794585--45794871	140	2.0	138	79	8	303	42	14	9	33	1.79
45804235--45804418	40	4.6	40	82	6	196	23	20	27	28	1.99
45804235--45804415	80	2.3	81	83	9	221	23	20	27	27	1.99
45804316--45804465	40	3.8	38	80	10	131	25	22	28	24	1.99
45812081--45812264	40	4.6	40	82	6	196	23	20	27	28	1.99
45812081--45812261	80	2.3	81	83	9	221	23	20	27	27	1.99
45812162--45812311	40	3.8	38	80	10	131	25	22	28	24	1.99
45845349--45845378	14	2.1	14	100	0	60	36	0	20	43	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45853935--45853981	6	7.8	6	80	7	51	4	2	27	65	1.22
45853924--45853981	30	2.0	29	82	3	71	10	3	24	62	1.43
45854590--45854719	71	1.9	70	83	13	173	38	5	5	50	1.48
45855658--45855700	13	3.1	14	83	6	52	0	20	0	79	0.74
45858745--45858822	39	2.0	39	97	0	147	15	10	29	44	1.79
45865279--45865497	45	4.9	45	87	5	304	26	28	21	24	1.99
45870434--45870475	12	3.5	12	80	0	57	4	26	45	23	1.73
45874390--45874424	3	11.7	3	100	0	70	31	0	0	68	0.90
45876692--45876734	22	2.0	22	100	0	86	18	27	34	18	1.95
45883337--45883379	18	2.4	18	96	0	77	18	13	16	51	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253