genome.fa.s4.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  129  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40991298--40991329	14	2.4	13	90	10	55	62	12	6	18	1.50
40992061--40992177	43	2.8	42	78	2	135	23	15	27	33	1.95
40995266--40995572	27	11.4	27	78	8	225	42	17	8	31	1.78
40996543--40996626	27	3.1	27	82	1	107	38	25	22	14	1.92
40997044--40997073	16	1.9	15	93	6	51	3	20	23	53	1.60
40998047--40998123	24	3.2	24	94	0	127	22	41	2	33	1.67
40998732--40998853	41	3.0	41	82	7	149	23	18	27	29	1.98
40999011--40999058	22	2.2	22	85	7	62	27	25	18	29	1.98
40999261--40999307	22	2.1	22	92	0	76	10	19	25	44	1.82
40999396--40999442	21	2.2	22	85	11	62	4	4	51	40	1.41
41003821--41003911	44	2.1	44	97	0	173	27	20	19	31	1.97
41014387--41014465	24	3.3	24	87	0	104	36	26	8	27	1.86
41019079--41019194	31	3.7	31	84	0	160	27	19	29	23	1.98
41019217--41019374	41	3.7	43	80	8	153	31	13	27	28	1.94
41019258--41019372	41	2.7	43	86	6	164	30	13	26	28	1.94
41026603--41026632	14	2.1	14	93	0	51	43	0	6	50	1.28
41030674--41030907	41	5.8	41	88	3	307	28	27	22	22	1.99
41032706--41032862	43	3.7	42	84	4	199	30	24	18	26	1.98
41035421--41035485	28	2.3	28	84	5	78	27	18	9	44	1.80
41037990--41038111	43	2.9	41	80	7	154	27	25	18	28	1.98
41039139--41039163	13	1.9	13	100	0	50	52	16	0	32	1.44
41044021--41044119	43	2.3	42	84	1	126	35	26	14	24	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41044937--41045008	37	1.9	37	94	0	126	27	30	19	22	1.98
41045154--41045338	48	3.8	48	92	4	309	30	26	7	35	1.83
41045154--41045337	98	1.9	97	93	4	318	30	26	7	35	1.83
41045308--41045501	47	4.1	47	89	0	271	27	28	10	32	1.90
41045401--41045472	22	3.1	22	64	24	58	23	29	13	33	1.93
41045261--41045501	94	2.6	94	84	4	281	28	28	9	33	1.89
41050774--41050892	27	4.4	27	80	4	150	25	22	18	33	1.97
41050732--41050908	54	3.3	55	77	5	164	27	24	18	29	1.98
41050733--41050907	27	6.5	27	75	9	117	27	24	18	29	1.98
41053931--41053979	24	1.9	26	88	12	75	48	10	4	36	1.56
41062756--41062869	43	2.7	42	74	14	108	24	18	26	30	1.98
41066773--41066817	20	2.2	20	84	7	56	35	11	2	51	1.50
41068706--41068783	31	2.5	31	85	0	102	10	28	34	26	1.89
41068758--41068801	20	2.3	18	84	7	52	11	36	27	25	1.90
41073042--41073085	22	2.0	22	100	0	88	18	22	36	22	1.95
41088611--41088794	40	4.7	40	86	7	234	24	21	27	26	1.99
41088662--41088827	40	4.2	40	84	9	198	25	19	27	27	1.99
41094049--41094170	9	12.9	9	75	10	109	32	2	19	45	1.64
41094053--41094170	57	2.1	57	85	0	155	32	2	19	45	1.64
41098043--41098097	25	2.2	25	90	0	83	40	18	40	1	1.61
41099637--41099681	14	3.2	14	75	12	56	51	26	0	22	1.49
41099954--41100066	7	16.1	7	75	7	95	38	41	0	19	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41100104--41100155	7	7.4	7	80	0	50	50	25	0	25	1.50
41100312--41100612	41	7.4	41	88	2	412	18	21	22	37	1.94
41100666--41100691	12	2.2	12	100	0	52	46	30	15	7	1.74
41101144--41101206	30	2.1	30	100	0	126	31	12	9	46	1.74
41102921--41103013	46	2.0	46	93	0	159	33	23	17	25	1.96
41104836--41104903	29	2.3	29	89	0	100	25	20	22	32	1.98
41105492--41105532	20	2.0	20	85	0	55	51	9	9	29	1.67
41109897--41109962	33	2.0	33	100	0	132	45	3	18	33	1.65
41111189--41111240	16	3.4	16	73	10	54	34	1	5	57	1.33
41111188--41111244	30	1.9	29	89	3	87	36	1	5	56	1.32
41111513--41111550	16	2.4	16	86	8	51	50	0	0	50	1.00
41116271--41116605	47	7.1	47	91	0	499	31	9	30	27	1.89
41116724--41116802	37	2.1	37	90	0	122	24	18	31	25	1.98
41120267--41120423	47	3.4	47	78	8	196	22	28	19	28	1.98
41121548--41121626	37	2.1	37	90	0	122	25	31	18	24	1.98
41121744--41122057	47	6.7	47	98	1	594	29	29	8	31	1.88
41121744--41122057	140	2.2	140	97	1	592	29	29	8	31	1.88
41125583--41125922	40	8.5	40	84	3	375	24	27	22	24	2.00
41126228--41126306	29	2.7	29	86	5	106	27	32	15	24	1.95
41126288--41126390	43	2.4	43	100	0	206	26	35	15	22	1.94
41128247--41128325	37	2.1	37	90	0	122	25	31	18	24	1.98
41128443--41128618	47	3.7	47	96	2	316	29	30	9	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41133945--41134009	28	2.2	29	75	5	69	41	0	1	56	1.08
41145622--41145649	12	2.3	12	100	0	56	64	0	0	35	0.94
41148637--41148762	52	2.5	52	85	7	186	27	13	29	29	1.94
41150860--41151011	40	3.8	40	89	2	207	25	28	21	24	1.99
41159001--41159152	40	3.8	40	89	2	207	25	28	21	24	1.99
41163065--41163148	24	3.5	23	75	6	69	40	5	39	14	1.70
41168745--41168784	20	2.0	20	90	0	62	45	17	7	30	1.76
41171732--41171763	16	2.0	16	100	0	64	50	6	0	43	1.27
41186380--41186556	27	6.6	27	81	5	196	27	15	28	29	1.96
41186381--41186535	81	1.9	81	88	5	233	27	15	28	29	1.96
41186377--41186556	81	2.2	81	83	3	229	27	15	27	29	1.96
41190957--41191035	15	5.4	15	77	10	83	10	17	13	58	1.63
41190948--41191034	29	3.0	29	81	8	95	10	17	16	56	1.67
41193402--41193575	46	3.8	45	75	14	178	21	19	30	28	1.97
41193398--41193568	91	1.9	92	91	4	283	21	19	30	27	1.98
41196935--41196985	20	2.7	19	82	14	54	41	0	21	37	1.54
41197637--41197752	46	2.5	44	85	10	137	31	16	30	22	1.96
41197736--41197763	11	2.5	11	100	0	56	28	10	35	25	1.89
41197690--41197811	57	2.1	57	84	3	154	29	18	29	22	1.97
41197755--41197909	48	3.2	49	76	9	165	30	21	26	21	1.98
41203122--41203191	13	5.0	14	73	20	58	52	2	0	44	1.15
41216499--41216620	43	2.8	44	77	4	151	32	21	17	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41221342--41221386	23	2.0	23	100	0	90	17	22	20	40	1.92
41221810--41221875	26	2.5	27	80	7	82	31	19	13	34	1.91
41222489--41222536	20	2.4	20	96	0	87	16	0	14	68	1.21
41222869--41223004	43	3.2	42	81	11	134	25	19	24	31	1.98
41232771--41232919	40	3.7	40	87	3	219	24	20	27	26	1.99
41236739--41236787	26	2.0	23	88	8	62	38	20	14	26	1.91
41236744--41236798	26	2.1	26	96	0	101	38	21	10	29	1.88
41237378--41237516	43	3.2	45	74	11	121	30	25	15	28	1.96
41239325--41239495	93	1.8	93	93	0	297	28	27	22	22	1.99
41239320--41239492	46	3.7	46	76	13	192	28	26	21	22	1.99
41241532--41241715	40	4.6	40	93	2	237	23	21	27	26	1.99
41243304--41243363	30	2.0	30	90	0	93	30	25	8	36	1.85
41248746--41248901	82	1.9	81	85	3	215	26	16	28	28	1.97
41248745--41248898	55	2.9	52	82	7	175	27	16	27	27	1.97
41248746--41248901	27	5.7	27	81	6	163	26	16	28	28	1.97
41248738--41248922	27	6.8	27	75	9	101	26	16	28	29	1.97
41248738--41248922	82	2.3	81	78	2	210	26	16	28	29	1.97
41256621--41256770	27	5.5	26	77	7	131	26	17	28	28	1.98
41256621--41256770	82	1.8	81	82	4	194	26	17	28	28	1.98
41256728--41256799	27	2.7	27	82	0	81	20	13	34	30	1.92
41267304--41267455	27	5.5	26	77	9	126	26	17	27	28	1.98
41267413--41267484	27	2.7	27	82	0	81	20	13	34	30	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41270317--41270480	43	3.8	43	79	9	165	26	18	23	31	1.98
41270373--41270480	42	2.5	42	85	4	146	25	20	25	28	1.99
41274575--41274659	1	85.0	1	71	0	62	85	1	2	10	0.73
41274573--41274653	20	3.7	20	77	18	72	83	1	2	12	0.79
41274573--41274657	17	5.1	15	78	17	80	84	1	2	11	0.77
41274573--41274626	20	2.7	20	85	5	74	83	1	3	11	0.85
41274575--41274659	26	3.4	23	81	13	89	85	1	2	10	0.73
41274595--41274659	29	2.3	27	92	5	103	87	0	1	10	0.61
41274573--41274661	24	3.7	24	82	8	110	84	1	2	12	0.78
41274575--41274672	27	3.6	27	82	10	110	82	2	3	12	0.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253