genome.fa.s4.2.7.7.80.10.50.1000.163.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  163  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52786277--52786323	24	1.9	25	83	12	62	42	2	8	46	1.46
52789052--52789110	30	2.0	30	82	0	73	33	15	23	27	1.95
52789449--52789670	46	4.8	46	80	10	195	26	18	31	23	1.97
52798235--52798298	30	2.2	29	91	2	101	26	15	21	35	1.94
52806765--52806936	45	3.7	46	76	11	156	27	17	30	24	1.97
52810378--52810418	20	2.0	20	90	0	64	24	14	26	34	1.94
52812654--52812708	25	2.1	26	86	6	76	27	7	12	52	1.65
52813122--52813236	49	2.3	48	83	5	140	27	14	17	40	1.89
52815399--52815444	24	1.9	24	100	0	92	36	13	15	34	1.86
52816567--52816604	13	2.9	13	96	0	67	7	39	21	31	1.82
52817601--52817717	49	2.4	49	81	7	141	24	26	23	25	2.00
52817728--52817854	48	2.8	45	81	13	161	25	28	18	27	1.98
52826772--52826898	66	1.9	66	82	3	157	25	22	19	33	1.97
52838180--52838310	65	2.0	65	100	0	262	48	9	18	24	1.77
52838542--52838763	46	4.7	46	78	9	184	22	29	19	28	1.98
52842142--52842268	49	2.6	49	84	3	157	23	26	21	28	1.99
52842331--52842466	48	2.9	48	77	10	154	25	30	16	27	1.96
52845930--52846107	40	4.5	40	90	3	254	24	23	27	24	2.00
52853478--52853792	46	6.7	49	74	9	176	23	26	20	28	1.99
52857713--52857741	14	2.1	14	100	0	58	13	13	13	58	1.63
52866893--52866951	30	1.9	31	86	3	84	27	20	3	49	1.65
52866893--52866961	30	2.3	31	82	7	79	27	18	5	47	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52868342--52868548	53	3.8	53	74	6	175	38	17	23	21	1.93
52876889--52877011	61	2.0	61	100	0	246	33	14	14	37	1.87
52877134--52877294	40	4.0	40	82	3	189	24	21	26	27	1.99
52879349--52879580	120	1.9	120	85	3	324	24	21	28	25	1.99
52879349--52879580	40	5.8	40	90	1	288	24	21	28	25	1.99
52882655--52882872	40	5.5	40	90	2	316	25	26	22	24	2.00
52890661--52890878	40	5.5	40	91	2	325	25	27	22	23	2.00
52901758--52901925	40	4.2	40	83	3	205	23	21	26	27	1.99
52902162--52902203	22	1.9	22	85	9	59	33	9	14	42	1.78
52904483--52904552	25	2.8	25	93	0	113	25	21	25	27	1.99
52904758--52904918	27	6.0	27	85	0	187	25	19	19	36	1.95
52904775--52904925	27	5.6	27	86	0	203	25	17	19	37	1.94
52904758--52904917	54	3.0	54	93	0	257	25	18	19	36	1.95
52904784--52904955	81	2.1	81	79	2	184	28	15	19	36	1.92
52904910--52905390	27	17.8	27	77	7	322	31	10	20	37	1.87
52904947--52905357	54	7.6	54	82	7	401	31	10	20	37	1.86
52905394--52905480	27	3.2	26	88	3	120	43	9	20	26	1.82
52910861--52910907	24	2.0	24	86	0	67	34	23	14	27	1.94
52911019--52911088	26	2.8	25	86	4	97	20	24	25	30	1.99
52911019--52911101	26	3.3	24	77	17	89	24	21	25	28	1.99
52911310--52911373	31	2.1	31	87	0	92	37	12	23	26	1.90
52916528--52916877	43	8.1	43	91	0	547	31	31	24	12	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52916528--52916877	173	2.0	172	91	0	565	31	31	24	12	1.92
52921314--52921485	93	1.8	93	93	0	299	27	30	20	21	1.98
52921307--52921482	46	3.8	46	77	14	191	28	30	20	21	1.98
52923094--52923161	21	3.4	20	78	12	68	36	10	29	23	1.88
52923104--52923153	18	2.7	18	87	3	64	40	8	32	20	1.81
52923672--52923726	16	3.4	16	87	0	74	36	9	25	29	1.87
52923708--52923801	44	2.1	46	90	7	149	31	5	27	35	1.79
52923993--52924047	12	4.8	11	82	10	58	50	1	0	47	1.11
52931356--52931570	47	4.6	47	94	0	340	28	30	7	33	1.86
52931406--52931484	25	3.3	25	66	16	76	31	29	5	34	1.79
52935578--52936056	40	12.0	40	91	0	735	25	28	22	24	1.99
52937473--52937687	47	4.6	47	90	0	295	27	29	8	33	1.87
52937523--52937601	25	3.3	24	67	16	65	30	27	7	34	1.85
52944928--52944977	23	2.2	23	86	13	68	42	20	14	24	1.88
52945015--52945132	27	4.4	27	82	2	103	19	20	18	41	1.91
52945057--52945152	27	3.6	27	84	1	86	15	18	22	42	1.88
52945146--52945513	27	13.8	27	89	2	483	35	13	16	33	1.89
52947284--52947416	48	2.8	48	81	4	151	32	15	15	36	1.90
52950606--52950637	3	10.7	3	93	0	55	65	3	0	31	1.08
52950920--52950986	25	2.6	25	80	4	71	49	0	2	47	1.16
52955120--52955161	22	1.9	22	90	0	66	21	16	45	16	1.86
52956202--52956226	3	8.3	3	100	0	50	32	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52956619--52956682	27	2.4	27	94	0	110	42	9	12	35	1.75
52957502--52957598	21	4.7	20	72	20	58	37	9	3	50	1.50
52958595--52958739	42	3.5	42	84	3	175	42	23	15	18	1.88
52958595--52958769	42	4.2	42	85	2	172	40	24	15	19	1.90
52960485--52960509	13	1.9	13	100	0	50	24	20	8	48	1.76
52964824--52965738	454	2.0	457	97	0	1746	29	16	17	36	1.92
52984332--52985232	207	4.4	207	93	0	1509	31	18	21	28	1.97
52987224--52987269	3	16.0	3	82	17	62	32	0	0	67	0.91
52988684--52988734	8	6.1	8	80	13	50	60	0	1	37	1.08
52988693--52988746	12	4.7	12	76	17	60	61	0	3	35	1.14
52988685--52988748	20	3.5	20	76	24	86	62	0	3	34	1.11
52988685--52988751	5	13.6	5	73	25	54	62	0	2	34	1.10
52988685--52988754	34	2.1	34	97	0	131	64	0	2	32	1.08
52991059--52991117	5	11.6	5	75	22	52	33	3	0	62	1.12
52991064--52991117	12	4.7	12	78	17	60	35	3	0	61	1.14
52991062--52991124	20	3.5	20	75	24	84	34	3	0	61	1.12
52991056--52991124	34	2.0	34	97	0	129	33	2	0	63	1.09
52991517--52991556	16	2.3	18	87	12	57	25	2	10	62	1.39
52996702--52996731	14	2.1	14	93	0	51	30	13	16	40	1.87
53007240--53007412	93	1.9	93	90	0	274	28	29	20	21	1.98
53007233--53007408	46	3.8	46	76	12	171	29	28	19	21	1.98
53018663--53019563	207	4.4	207	92	0	1509	31	18	21	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53021476--53021515	3	14.0	3	80	19	50	32	0	0	67	0.91
53022929--53022979	8	6.1	8	80	13	50	60	0	1	37	1.08
53022938--53022991	12	4.7	12	76	17	60	61	0	3	35	1.14
53022930--53022993	20	3.5	20	76	24	86	62	0	3	34	1.11
53022930--53022996	5	13.6	5	73	25	54	62	0	2	34	1.10
53022930--53022999	34	2.1	34	97	0	131	64	0	2	32	1.08
53025669--53025735	5	13.6	5	73	25	54	34	2	0	62	1.10
53025674--53025727	12	4.7	12	78	17	60	35	3	0	61	1.14
53025672--53025735	20	3.5	20	76	24	86	34	3	0	62	1.11
53025686--53025736	8	6.1	8	78	13	50	37	1	0	60	1.08
53025666--53025735	34	2.1	34	97	0	131	32	2	0	64	1.08
53026127--53026166	19	2.3	18	87	12	57	25	5	10	60	1.49
53026130--53026172	20	2.2	19	84	12	52	23	4	13	58	1.55
53032904--53033165	40	6.6	40	93	2	438	23	22	27	25	2.00
53033423--53033466	22	2.0	21	83	16	54	31	18	13	36	1.90
53034570--53034599	14	2.1	14	93	0	51	30	13	16	40	1.87
53047266--53047298	17	1.9	17	88	11	50	84	6	3	6	0.84
53047531--53047555	13	1.9	13	100	0	50	48	8	20	24	1.76
53049008--53049040	16	2.0	17	94	5	59	42	12	9	36	1.74
53049277--53049511	50	4.7	50	83	4	289	30	22	17	30	1.96
53061926--53062019	25	3.8	25	75	2	73	30	21	21	26	1.98
53064171--53064215	23	2.0	23	90	0	72	35	28	24	11	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53078197--53078300	40	2.6	40	78	4	111	24	27	19	28	1.98
53078278--53078448	43	4.0	43	81	7	170	24	28	21	26	1.99
53078279--53078442	86	1.9	85	81	8	199	23	28	21	25	1.99
53079547--53079614	29	2.4	28	81	13	77	39	22	0	38	1.54
53088285--53088339	18	3.1	19	82	10	71	45	14	18	21	1.85
53088664--53088943	27	10.4	28	80	5	265	38	18	16	27	1.91
53088662--53088931	81	3.3	81	87	3	357	38	18	15	27	1.91
53092134--53092245	39	2.9	39	93	0	188	26	20	29	23	1.99
53098728--53098776	22	2.2	22	82	7	55	38	46	0	14	1.44
53100206--53100236	15	2.1	15	93	0	53	83	9	0	6	0.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253