genome.fa.s4.2.7.7.80.10.50.1000.192.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  192  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62923100--62923144	22	2.0	22	95	0	81	48	13	15	22	1.79
62926773--62926797	13	1.9	13	100	0	50	40	0	4	56	1.18
62930891--62930925	18	1.9	18	88	0	52	22	31	37	8	1.85
62933738--62933785	22	2.2	22	85	7	62	31	25	10	33	1.89
62934353--62934380	10	2.8	10	100	0	56	53	0	7	39	1.28
62934385--62934434	23	2.3	22	83	10	66	72	2	0	26	0.96
62934392--62934434	23	1.9	22	90	4	68	69	2	0	27	1.00
62937240--62937294	28	2.0	28	85	3	76	76	7	5	10	1.15
62940536--62940679	49	2.9	49	93	0	243	25	16	27	29	1.97
62952051--62952320	95	2.9	91	80	7	292	27	19	29	23	1.98
62952237--62952366	49	2.7	49	85	8	160	28	20	29	22	1.98
62953095--62953226	55	2.4	55	85	2	176	22	20	30	26	1.98
62959406--62959698	47	6.2	46	67	13	139	29	17	29	23	1.97
62959403--62959578	95	1.9	94	83	5	230	27	19	30	22	1.98
62959406--62959718	49	6.6	47	74	11	194	29	18	28	23	1.97
62960498--62960615	55	2.1	55	85	0	164	19	25	33	22	1.97
62966716--62966766	26	2.0	26	84	7	68	17	23	21	37	1.94
62968727--62968760	17	2.1	16	88	5	50	23	8	2	64	1.36
62968726--62968760	18	2.1	18	89	10	56	22	8	2	65	1.34
62975350--62975783	217	2.0	217	95	0	789	34	20	15	29	1.93
62978392--62978429	18	2.0	20	85	10	53	42	0	0	57	0.98
62984019--62984070	5	10.2	5	76	19	54	25	0	1	73	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62984020--62984156	21	6.4	20	69	27	72	26	2	1	70	1.08
62984018--62984069	27	2.0	26	85	11	70	25	0	1	73	0.94
62984132--62984156	6	4.2	6	100	0	50	16	0	0	84	0.63
62984127--62984197	26	2.7	26	76	4	81	18	4	1	76	1.03
62996958--62997002	20	2.2	20	88	0	63	48	4	8	37	1.55
63001326--63001376	25	2.0	26	92	3	86	54	15	5	23	1.63
63001464--63001545	41	2.0	41	95	0	146	41	9	17	31	1.82
63003618--63003647	10	3.0	10	90	0	51	23	0	36	40	1.55
63004333--63004459	47	2.7	47	87	2	173	29	19	29	22	1.98
63005959--63005997	19	2.1	19	100	0	78	51	15	0	33	1.44
63008473--63008509	18	2.1	18	100	0	74	56	5	0	37	1.22
63018966--63019068	50	2.1	50	88	3	154	38	14	21	25	1.91
63019172--63019285	28	4.1	28	87	0	156	34	14	21	30	1.92
63019172--63019285	56	2.0	56	89	0	174	34	14	21	30	1.92
63019175--63019301	56	2.3	56	86	2	166	34	14	22	27	1.94
63025381--63025444	31	2.1	31	93	0	110	21	1	34	42	1.63
63025713--63025738	3	8.7	3	100	0	52	0	30	0	69	0.89
63028663--63028720	21	2.8	21	71	7	55	13	18	27	39	1.89
63029353--63029622	80	3.4	78	85	6	328	44	26	9	19	1.81
63031298--63031347	15	3.3	15	80	0	64	38	30	10	22	1.86
63031795--63031889	34	2.8	34	87	4	138	60	13	2	24	1.45
63032303--63032343	21	2.0	21	95	0	73	29	29	17	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63032414--63032460	22	2.1	22	100	0	94	21	8	14	55	1.66
63036431--63036477	21	2.2	22	92	3	78	21	19	38	21	1.94
63041735--63041766	17	1.9	16	93	6	55	21	18	31	28	1.97
63058071--63058148	39	2.0	39	97	0	147	24	15	21	38	1.92
63062573--63062796	49	4.7	49	76	10	180	27	21	27	22	1.99
63064443--63064699	127	2.0	128	84	3	340	33	22	15	28	1.94
63068658--63068702	18	2.2	21	81	18	60	24	31	0	44	1.54
63070826--63071070	49	4.9	49	83	3	301	29	26	18	25	1.98
63073157--63073486	48	6.9	48	75	2	261	24	30	18	26	1.98
63073208--63073385	94	1.9	94	83	0	230	23	29	17	29	1.97
63074874--63074912	18	2.1	18	85	4	51	38	5	0	56	1.22
63076738--63076787	12	4.1	13	72	12	52	50	8	8	34	1.61
63076747--63076794	24	2.0	24	100	0	96	45	8	8	37	1.64
63086302--63086380	11	6.6	11	70	18	52	43	1	3	51	1.27
63086251--63086380	61	2.1	61	86	0	179	42	2	6	49	1.40
63087809--63087865	10	5.5	10	79	6	60	8	3	5	82	0.93
63089931--63089992	29	2.1	30	84	3	81	40	3	6	50	1.44
63100149--63100195	18	2.6	18	86	0	76	29	10	29	29	1.91
63105256--63105308	25	2.2	24	82	3	61	16	28	15	39	1.89
63105458--63105549	25	3.8	24	78	11	80	14	25	19	41	1.89
63105394--63105549	50	3.1	49	69	12	113	16	23	20	39	1.92
63105504--63105566	25	2.5	24	75	14	56	17	20	23	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63106792--63106889	43	2.3	43	85	0	124	15	26	28	29	1.96
63108756--63108809	24	2.2	24	100	0	108	35	27	3	33	1.75
63128566--63128627	23	2.6	24	76	14	67	30	0	1	67	1.00
63128583--63128633	26	2.0	27	84	7	70	33	0	1	64	1.05
63128928--63128994	20	3.1	21	79	12	75	67	0	31	1	1.00
63128937--63128996	17	3.4	17	80	13	68	70	0	28	1	0.97
63132050--63132093	6	7.3	6	84	0	61	36	31	29	2	1.70
63132512--63132553	22	2.0	22	85	4	59	21	26	40	11	1.88
63133827--63134075	49	5.2	48	73	16	207	24	30	18	27	1.98
63133827--63134076	93	2.6	95	84	5	321	24	30	18	27	1.98
63141544--63141813	49	5.6	47	76	10	208	24	27	18	29	1.98
63141545--63141816	98	2.8	98	81	7	288	24	27	18	29	1.98
63146402--63146450	24	2.1	23	96	3	89	12	18	20	48	1.79
63147669--63147738	20	3.4	20	80	9	79	60	0	0	40	0.97
63147904--63147993	32	2.8	30	79	15	85	56	1	0	42	1.06
63147903--63147968	32	2.1	32	86	11	91	54	1	0	43	1.09
63147957--63148038	22	3.6	22	79	11	78	52	1	1	45	1.16
63147957--63148012	25	2.4	25	85	8	73	57	0	1	41	1.09
63148232--63148270	20	2.0	20	89	0	60	30	2	2	64	1.21
63153933--63153996	31	2.1	31	88	8	96	57	10	4	26	1.52
63154027--63154057	14	2.2	14	94	0	53	61	12	6	19	1.53
63154249--63154320	36	2.0	36	100	0	144	13	41	19	25	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63155272--63155318	11	4.2	11	79	12	51	38	12	0	48	1.41
63155269--63155318	24	2.1	24	92	0	82	38	14	0	48	1.44
63161382--63161477	50	1.9	51	82	2	122	33	9	33	23	1.87
63162360--63162392	17	1.9	17	88	11	50	39	12	3	45	1.57
63163425--63163454	13	2.4	12	94	5	51	40	0	13	46	1.43
63163472--63163520	10	4.9	10	80	14	57	20	8	2	69	1.24
63164240--63164273	17	1.9	18	88	5	52	26	8	5	58	1.51
63168344--63168378	16	2.2	16	89	0	52	42	0	0	57	0.99
63168338--63168423	30	2.8	32	78	13	94	44	2	0	53	1.13
63174106--63174146	21	2.0	21	81	18	50	21	26	19	31	1.97
63179170--63179226	24	2.4	24	90	0	87	38	19	19	22	1.93
63182852--63182892	21	2.0	21	81	18	50	31	19	26	21	1.97
63186163--63186196	14	2.4	14	90	9	52	70	2	26	0	1.01
63189968--63190011	10	4.5	10	88	2	63	43	0	0	56	0.99
63194905--63194958	23	2.4	24	76	17	62	27	0	3	68	1.06
63196617--63196730	41	2.8	42	76	10	110	20	21	15	42	1.89
63214461--63214504	22	2.0	23	86	4	63	56	0	0	43	0.99
63214462--63214492	15	2.0	16	93	6	55	61	0	0	38	0.96
63219467--63219550	26	3.2	26	96	0	150	36	25	4	33	1.77
63224008--63224042	16	2.1	18	89	10	56	37	17	0	45	1.48
63227936--63227970	17	2.1	16	89	5	52	71	0	28	0	0.86
63228870--63229003	18	7.4	18	86	0	169	34	14	15	35	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63228870--63229003	54	2.5	54	87	0	187	34	14	15	35	1.89
63241254--63241292	19	2.0	20	90	5	62	61	0	0	38	0.96
63245943--63245972	15	2.0	15	93	0	51	26	3	40	30	1.72
63246491--63246515	13	1.9	13	100	0	50	32	0	20	48	1.50
63251056--63251080	13	1.9	13	100	0	50	24	24	24	28	2.00
63264123--63264230	56	2.0	56	84	12	147	39	0	1	57	1.16
63265616--63265654	16	2.4	16	78	0	51	41	7	20	30	1.80
63265836--63265865	15	2.0	15	100	0	60	66	0	0	33	0.92
63287346--63287396	21	2.5	21	75	15	61	68	5	1	23	1.22
63287371--63287428	27	2.1	28	83	3	73	74	3	0	22	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253