genome.fa.s4.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  132  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41996949--41996973	11	2.3	11	100	0	50	92	0	8	0	0.40
41997789--41997817	14	2.1	14	100	0	58	17	13	27	41	1.87
42001174--42001252	29	2.7	29	86	5	106	27	32	15	24	1.95
42004398--42004565	27	6.2	27	86	2	221	36	17	20	25	1.94
42004877--42004938	31	2.0	32	90	3	99	20	25	19	33	1.96
42005078--42005165	6	14.3	6	75	17	83	18	20	15	45	1.85
42005081--42005151	25	2.8	25	85	12	85	16	22	16	43	1.87
42005078--42005181	31	3.4	31	84	4	131	18	19	15	47	1.83
42007116--42007201	27	3.2	27	86	1	129	38	16	19	25	1.92
42007114--42007228	54	2.2	53	80	4	133	39	15	20	24	1.92
42007540--42007601	31	2.0	32	87	3	90	22	24	19	33	1.97
42010600--42010760	38	4.2	38	87	3	191	32	26	20	21	1.97
42010630--42010789	38	4.2	38	88	1	212	30	25	22	22	1.99
42015538--42015583	24	2.0	23	82	4	56	36	23	21	17	1.94
42016700--42016753	27	2.0	27	96	0	99	37	12	22	27	1.91
42020927--42020965	20	2.0	20	89	0	60	38	10	2	48	1.51
42031661--42031738	34	2.3	34	84	8	97	25	25	26	21	2.00
42041912--42041951	21	1.9	21	85	10	55	25	15	5	55	1.60
42053738--42053795	31	1.9	31	82	10	75	65	0	15	18	1.27
42054020--42054113	46	2.0	46	95	0	170	39	2	23	35	1.67
42063185--42063324	29	4.9	28	78	8	124	26	32	15	25	1.95
42063185--42063327	57	2.5	56	81	8	146	26	32	14	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42072810--42072844	16	2.2	16	89	0	52	11	11	17	60	1.59
42073318--42073366	24	2.0	24	100	0	98	40	24	18	16	1.90
42074199--42074235	18	2.1	18	100	0	74	37	16	16	29	1.90
42081232--42081302	28	2.5	28	84	4	90	32	26	12	28	1.93
42087130--42087355	40	5.7	40	85	5	289	25	22	27	25	2.00
42103739--42103931	40	4.8	40	90	1	291	24	23	26	24	2.00
42106355--42106425	28	2.5	28	88	4	99	32	25	12	29	1.93
42132332--42132385	22	2.5	21	82	14	58	48	24	0	27	1.52
42132352--42132393	22	1.9	22	85	0	57	47	21	4	26	1.70
42134484--42134547	28	2.5	24	77	18	74	34	26	10	28	1.90
42134495--42134558	28	2.3	28	89	5	94	31	29	9	29	1.88
42134664--42134726	28	2.2	29	88	2	92	20	23	23	31	1.98
42134674--42134737	28	2.2	28	86	2	83	23	26	18	31	1.98
42142346--42142433	27	3.3	28	87	10	123	32	27	7	31	1.86
42142539--42142628	28	3.2	27	85	7	119	20	24	23	32	1.98
42143698--42143810	7	16.0	7	72	9	54	15	2	37	44	1.61
42143698--42143781	28	3.3	27	66	22	72	15	1	36	46	1.54
42143676--42143781	49	2.2	49	86	3	142	18	0	33	46	1.56
42143699--42143802	21	5.0	21	75	11	88	16	2	35	45	1.62
42143663--42143810	42	3.5	42	77	9	131	18	2	34	44	1.62
42143698--42143821	49	2.5	49	88	5	171	15	2	36	45	1.59
42143788--42143818	15	2.1	15	93	0	53	12	0	45	41	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42144150--42144331	84	2.2	84	92	2	303	31	14	23	30	1.94
42144707--42144739	16	2.1	16	94	0	57	15	12	15	57	1.65
42147667--42147748	9	9.1	9	75	10	69	42	20	3	32	1.70
42147647--42147739	45	2.1	45	89	0	141	45	18	3	33	1.65
42152845--42152873	14	2.1	14	93	6	51	34	0	6	58	1.25
42153729--42153853	43	2.9	43	79	1	126	24	22	20	32	1.97
42156510--42156554	16	2.8	17	77	12	51	51	17	11	20	1.75
42157353--42157436	43	2.0	43	86	9	118	28	28	16	26	1.97
42161375--42161428	27	2.0	28	81	3	65	44	12	12	29	1.80
42165586--42165651	27	2.4	27	80	5	80	36	19	21	22	1.95
42166290--42166341	27	2.0	26	88	3	77	17	25	21	36	1.94
42166380--42166439	27	2.3	26	82	2	66	23	21	20	35	1.96
42170268--42170448	79	2.3	80	79	8	190	25	27	22	24	2.00
42170268--42170455	40	4.7	40	81	7	213	26	26	22	25	2.00
42177571--42177754	40	4.6	40	76	10	171	25	26	21	26	2.00
42177599--42177708	39	2.8	40	86	5	152	27	27	19	26	1.99
42183091--42183228	40	3.5	40	95	3	235	25	28	23	23	2.00
42191267--42191482	40	5.4	40	92	1	355	27	28	20	23	1.99
42195214--42195278	27	2.4	27	84	0	85	32	18	23	26	1.97
42197622--42197886	40	6.7	40	82	5	270	24	22	27	25	2.00
42197621--42197842	120	1.9	120	86	1	320	24	22	26	26	2.00
42197621--42197870	120	2.1	120	83	3	306	25	22	26	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42212134--42212188	29	1.9	29	85	10	78	20	23	38	18	1.93
42214365--42214549	40	4.7	40	84	4	214	25	21	25	27	2.00
42214362--42214549	79	2.4	78	80	7	218	26	21	25	27	1.99
42214362--42214572	40	5.3	39	79	7	158	26	21	25	27	1.99
42222435--42222662	40	5.8	39	83	10	254	24	22	27	25	2.00
42225610--42225655	16	2.9	16	83	0	65	52	19	17	10	1.74
42230209--42230391	79	2.3	81	82	7	214	25	22	27	25	2.00
42230209--42230393	40	4.7	40	80	6	207	24	22	27	25	2.00
42230256--42230426	79	2.2	78	80	10	186	27	19	26	25	1.99
42232697--42232739	16	2.7	16	88	0	68	55	18	13	11	1.68
42232689--42232750	24	2.6	24	84	0	79	50	22	16	11	1.76
42232967--42233034	28	2.4	29	85	9	95	27	13	29	29	1.94
42245005--42245030	13	2.0	13	100	0	52	23	30	30	15	1.95
42247302--42247361	30	2.0	30	100	0	120	40	6	23	30	1.80
42260546--42260630	27	3.2	26	88	5	125	36	20	24	18	1.95
42260730--42260787	25	2.3	25	81	3	62	29	12	24	34	1.91
42274553--42274700	48	3.1	48	91	0	233	30	24	8	37	1.84
42276150--42276193	23	1.9	23	85	0	61	45	11	6	36	1.67
42276310--42276335	12	2.2	12	100	0	52	42	7	15	34	1.75
42277112--42277228	40	3.0	40	94	1	191	26	29	23	19	1.98
42279172--42279319	48	3.1	48	92	0	242	29	24	8	37	1.84
42283946--42284170	40	5.7	40	86	5	296	24	22	28	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42283946--42284204	80	3.2	80	82	7	235	25	21	27	24	1.99
42291974--42292198	40	5.7	40	86	5	296	24	22	28	25	2.00
42291974--42292231	119	2.2	119	81	6	283	25	21	27	24	1.99
42294163--42294323	43	3.8	42	77	11	166	25	16	24	33	1.96
42296008--42296175	43	4.0	43	76	9	157	25	16	28	29	1.97
42296609--42296646	14	2.7	14	91	0	58	39	5	15	39	1.70
42301969--42302017	6	8.2	6	86	0	71	32	0	65	2	1.04
42303893--42303960	34	2.0	34	85	0	91	32	16	23	27	1.96
42305738--42305802	28	2.3	28	86	5	87	33	29	6	30	1.82
42305908--42305970	28	2.2	29	88	2	92	20	22	23	33	1.97
42305918--42305981	28	2.2	28	86	2	83	25	25	18	31	1.98
42309416--42309483	34	2.0	34	100	0	136	32	5	26	35	1.81
42322731--42322755	11	2.3	11	100	0	50	40	0	24	36	1.55
42323969--42324047	26	3.0	27	83	5	99	18	8	26	45	1.79
42329938--42329985	25	1.9	25	91	0	78	35	25	14	25	1.94
42330022--42330087	20	3.3	20	91	2	107	33	12	19	34	1.89
42330138--42330231	45	2.1	46	90	6	147	28	19	20	31	1.97
42330137--42330252	23	5.0	24	87	7	152	28	19	21	30	1.98
42330444--42330507	31	2.1	31	93	0	110	37	15	23	23	1.93
42338736--42338802	20	3.3	20	85	0	98	34	10	22	32	1.88
42338853--42338947	23	4.1	23	91	5	156	29	18	21	30	1.97
42339162--42339225	31	2.1	31	87	0	92	39	14	21	25	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42342377--42342439	27	2.3	27	91	0	99	33	17	26	22	1.96
42342377--42342464	27	3.3	27	85	1	97	32	18	25	23	1.97
42348977--42349318	47	7.3	47	90	0	522	33	8	29	28	1.86
42351168--42351559	40	9.8	40	89	0	615	22	21	29	26	1.99
42355485--42355876	47	8.4	47	91	0	599	32	8	30	28	1.86
42355485--42355876	140	2.8	140	91	0	631	32	8	30	28	1.86
42359739--42359842	27	3.9	27	85	2	138	30	17	23	28	1.97
42360174--42360249	33	2.3	33	86	0	89	25	25	19	30	1.98
42360194--42360260	33	2.0	33	85	0	89	29	23	19	26	1.98
42362359--42362453	47	2.0	48	93	2	165	46	11	13	28	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253