genome.fa.s4.2.7.7.80.10.50.1000.221.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  221  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72459708--72459804	27	3.6	26	83	10	106	37	21	23	17	1.94
72459695--72459804	54	2.0	54	84	3	141	39	21	22	16	1.92
72461047--72461089	22	2.0	22	85	0	59	67	2	23	6	1.27
72478856--72478901	21	2.2	21	88	3	67	67	0	0	32	0.91
72481023--72481086	17	3.6	17	84	16	85	35	14	10	39	1.81
72481023--72481094	35	2.0	37	89	8	112	36	15	9	38	1.80
72481055--72481092	17	2.5	15	87	12	51	34	15	10	39	1.82
72481213--72481253	21	2.0	21	85	0	55	9	2	14	73	1.19
72481449--72481584	45	3.0	45	82	2	148	26	29	13	30	1.95
72481614--72481907	78	3.8	78	89	2	457	24	22	19	32	1.97
72487720--72487779	30	2.0	30	83	6	77	36	6	26	30	1.82
72488202--72488330	47	2.8	47	85	1	170	21	19	27	31	1.97
72493625--72493696	19	3.9	19	85	10	114	37	15	9	37	1.80
72493625--72493687	17	3.5	17	89	4	81	38	14	9	38	1.78
72493618--72493696	35	2.2	37	84	13	112	36	16	8	37	1.80
72493657--72493694	17	2.5	15	87	12	51	34	15	10	39	1.82
72494502--72494543	16	2.7	16	78	14	52	42	0	0	57	0.99
72495841--72495902	23	2.8	22	74	16	74	14	20	25	38	1.91
72497625--72497685	30	2.0	30	96	0	113	21	19	1	57	1.49
72507624--72507668	22	2.0	22	100	0	90	31	26	8	33	1.87
72513337--72513376	12	3.3	13	80	16	50	65	7	15	12	1.47
72515568--72515618	24	2.1	23	86	13	68	43	23	9	23	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72516421--72516518	12	7.8	13	72	16	64	33	4	2	60	1.27
72516439--72516487	14	3.3	15	78	18	57	34	0	4	61	1.15
72516563--72516755	16	11.8	16	66	22	55	35	2	3	59	1.25
72516827--72516901	29	2.4	32	85	10	95	34	4	5	56	1.41
72527343--72527894	289	1.9	288	90	1	822	32	17	20	29	1.96
72528378--72528403	9	2.9	9	100	0	52	23	42	23	11	1.86
72528516--72528556	21	2.0	21	85	9	57	24	26	19	29	1.98
72528877--72528929	24	2.3	22	87	6	70	43	26	11	18	1.84
72528862--72528929	22	3.0	22	77	8	73	41	23	11	23	1.87
72529762--72529810	14	3.3	15	78	18	57	34	0	4	61	1.15
72529886--72530072	16	11.4	16	67	19	57	35	2	3	59	1.25
72530024--72530056	14	2.4	14	90	10	50	33	3	0	63	1.10
72530149--72530223	29	2.4	32	85	10	95	34	4	5	56	1.41
72532541--72532580	19	2.0	20	86	13	57	77	2	5	15	1.04
72532821--72532863	19	2.3	19	88	4	61	4	9	0	86	0.71
72534296--72534359	34	1.9	33	93	3	110	31	9	20	39	1.84
72538560--72538590	13	2.4	13	94	0	53	22	3	0	74	0.96
72539884--72539918	18	1.9	18	88	0	52	45	8	0	45	1.34
72539923--72539980	17	3.3	17	73	7	62	34	1	3	60	1.24
72540103--72540153	21	2.7	19	80	16	61	33	1	3	60	1.26
72545337--72545403	33	2.0	33	100	0	134	23	20	14	40	1.90
72549471--72549562	46	2.0	45	91	6	150	46	7	17	28	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72550405--72550449	19	2.3	20	78	17	51	42	4	6	46	1.50
72550740--72550798	21	2.8	20	71	16	57	13	0	35	50	1.42
72550826--72550857	15	2.1	15	94	0	55	65	0	6	28	1.16
72550852--72550912	18	3.3	18	69	13	61	50	1	1	45	1.21
72550832--72550912	37	2.2	37	97	0	153	54	1	2	41	1.21
72553278--72553352	39	1.9	39	91	0	123	24	10	13	52	1.72
72554442--72554880	106	4.2	106	92	3	703	34	6	4	54	1.47
72554911--72554951	19	2.2	18	83	12	55	43	14	4	36	1.67
72554983--72555262	9	30.7	9	67	19	100	45	14	3	36	1.61
72555024--72555225	18	11.0	18	70	12	124	44	14	4	36	1.65
72554986--72555245	74	3.5	74	92	1	423	45	14	3	36	1.62
72560305--72560333	14	2.1	14	93	6	51	34	0	10	55	1.34
72560743--72560797	21	2.6	21	79	0	65	29	18	49	3	1.64
72562700--72562733	6	5.5	6	93	6	59	82	0	0	17	0.67
72562700--72562738	18	2.2	18	86	9	53	82	2	0	15	0.79
72562702--72562743	13	3.3	13	90	9	61	78	2	0	19	0.86
72565057--72565310	127	2.0	127	90	0	400	44	13	6	35	1.71
72566369--72566432	10	6.1	10	74	18	51	34	6	3	56	1.40
72569116--72569144	7	4.1	7	100	0	58	58	13	13	13	1.63
72569166--72569232	34	2.0	33	97	2	125	49	14	11	23	1.77
72569171--72569243	34	2.2	34	87	2	103	46	20	8	24	1.78
72571114--72571145	2	15.5	2	93	6	55	50	0	3	46	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72574185--72574233	22	2.2	22	100	0	98	32	30	14	22	1.93
72579218--72579317	49	2.0	49	100	0	200	36	28	8	28	1.85
72587809--72587869	31	2.0	31	100	0	122	37	6	16	39	1.75
72588130--72588175	22	2.1	22	100	0	92	45	0	17	36	1.49
72591624--72591666	16	2.6	16	82	14	52	18	4	4	72	1.20
72607129--72607215	44	2.0	44	81	4	104	26	10	31	32	1.90
72607081--72607514	178	2.4	178	86	3	586	27	16	27	28	1.97
72607307--72607393	44	2.0	44	86	4	122	28	14	28	27	1.96
72609308--72609368	28	2.2	28	82	11	72	39	4	0	55	1.21
72612731--72612826	23	4.2	23	75	16	83	41	20	20	16	1.90
72615318--72615350	16	2.1	16	94	0	57	39	9	18	33	1.82
72622968--72623046	32	2.5	32	91	4	126	21	11	21	45	1.83
72624033--72624083	22	2.3	22	96	0	93	29	9	13	47	1.75
72630999--72631182	27	6.8	27	88	0	224	29	21	8	40	1.82
72630999--72631182	54	3.4	54	84	0	251	29	21	8	40	1.82
72630999--72631210	54	3.9	54	83	0	244	31	21	8	39	1.82
72630999--72631211	81	2.6	81	81	0	210	31	21	7	39	1.82
72631134--72631382	54	4.6	55	78	6	195	39	20	8	32	1.82
72631060--72631316	81	3.2	81	74	5	178	36	20	8	35	1.82
72631161--72631390	27	8.4	27	76	9	146	39	19	8	32	1.82
72631431--72631504	27	2.7	27	76	12	71	37	20	20	21	1.94
72632312--72632381	25	2.8	24	86	4	95	25	25	24	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72632311--72632394	25	3.4	24	80	8	89	28	22	23	25	1.99
72632529--72632620	42	2.2	42	96	0	166	31	16	20	31	1.95
72632644--72632758	31	3.7	31	92	1	196	27	16	26	29	1.97
72640486--72640631	57	2.6	57	83	2	177	25	21	12	40	1.88
72642831--72642868	18	2.1	19	90	5	60	42	10	7	39	1.69
72643809--72643838	14	2.1	14	93	0	51	6	36	33	23	1.81
72648655--72648896	43	5.6	43	86	0	277	26	26	18	27	1.98
72648660--72648896	129	1.8	129	83	1	314	25	27	18	28	1.98
72648917--72648959	22	1.9	23	85	4	61	37	0	4	58	1.19
72649943--72649984	21	2.0	21	100	0	84	28	19	4	47	1.69
72652022--72652067	23	2.0	23	87	8	67	34	28	6	30	1.82
72654186--72654323	7	19.1	7	68	11	55	39	39	1	20	1.61
72654230--72654294	23	2.9	22	81	6	78	41	40	0	18	1.51
72654781--72654835	27	2.0	27	96	0	101	40	27	14	18	1.89
72654808--72654983	41	4.3	41	83	1	228	31	26	19	22	1.98
72654956--72655085	41	3.2	40	80	7	154	20	20	22	36	1.96
72657652--72657682	12	2.6	12	100	0	62	6	25	41	25	1.79
72677484--72677534	18	2.8	18	77	16	52	78	1	11	7	1.04
72678000--72678036	15	2.3	17	86	9	51	16	5	8	70	1.30
72683910--72683945	17	2.1	18	89	5	56	47	5	5	41	1.50
72687728--72687851	48	2.5	48	84	5	142	23	29	16	30	1.97
72694568--72694813	49	5.0	49	81	3	276	29	26	18	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72694582--72694813	100	2.3	99	86	2	322	29	27	18	25	1.98
72695135--72695201	35	1.9	35	93	0	116	50	13	1	34	1.51
72695147--72695204	19	3.2	19	68	22	61	51	10	1	36	1.46
72695394--72695453	30	2.0	30	87	6	86	28	26	8	36	1.85
72707114--72707166	17	3.2	17	78	19	58	83	0	11	5	0.81
72709960--72710156	37	5.3	37	82	3	191	21	13	26	38	1.91
72711358--72711392	15	2.3	15	85	0	52	22	5	5	65	1.36
72714273--72714313	20	2.0	20	100	0	82	48	7	9	34	1.64
72720459--72720492	18	1.9	18	88	5	52	8	14	2	73	1.19
72723852--72723906	25	2.2	25	93	0	92	32	23	16	27	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253