genome.fa.s4.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  149  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47713316--47713480	41	4.1	40	76	17	169	23	22	27	27	1.99
47715869--47715936	29	2.3	29	85	5	93	27	30	13	27	1.94
47716038--47716116	29	2.7	30	82	13	110	29	30	15	25	1.96
47715761--47716110	174	2.0	171	91	2	558	31	24	14	29	1.94
47724019--47724086	29	2.3	29	85	5	93	27	30	13	27	1.94
47724188--47724266	29	2.7	30	82	13	110	29	30	15	25	1.96
47732660--47732698	20	1.9	21	89	5	62	35	15	0	48	1.45
47732871--47733001	43	3.1	42	75	14	135	33	25	16	25	1.95
47732871--47733025	43	3.7	43	77	10	129	32	25	16	25	1.96
47736217--47736344	46	2.8	46	98	0	247	19	23	29	27	1.98
47740006--47740114	37	2.9	37	93	0	182	27	31	18	22	1.97
47740261--47740845	48	12.0	48	89	4	812	31	25	5	36	1.80
47740264--47740845	246	2.4	245	93	1	979	31	25	6	36	1.80
47749042--47749076	16	2.2	16	90	5	54	40	0	17	42	1.49
47757014--47757107	44	2.2	42	83	7	109	25	14	25	34	1.94
47758330--47758417	24	3.7	24	84	0	113	38	31	11	18	1.86
47758323--47758429	24	4.5	23	80	8	99	37	33	10	18	1.85
47759695--47759732	18	2.1	19	85	14	53	23	7	0	68	1.16
47767633--47767749	45	2.7	43	79	17	127	26	24	18	29	1.98
47767633--47767798	42	3.9	42	77	6	154	28	25	16	28	1.97
47769885--47769975	41	2.2	41	90	5	141	35	24	17	23	1.95
47775513--47775690	27	6.6	27	85	3	205	29	29	14	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47775513--47775690	54	3.3	54	85	3	232	29	29	14	26	1.95
47775534--47775689	81	1.9	82	88	3	235	29	29	14	26	1.95
47778059--47778119	30	2.0	30	83	0	77	31	22	8	37	1.84
47779694--47779737	19	2.3	18	81	11	52	29	0	4	65	1.12
47779695--47779732	19	2.0	20	89	5	60	26	0	5	68	1.11
47780040--47780093	25	2.1	26	86	10	76	48	7	3	40	1.49
47788534--47788677	49	2.9	48	81	6	164	25	20	26	28	1.99
47793327--47793505	27	6.6	27	83	5	198	30	29	14	26	1.95
47801505--47801682	27	6.6	27	85	3	205	29	29	14	26	1.95
47801505--47801682	54	3.3	54	84	3	232	29	29	14	26	1.95
47801526--47801681	81	1.9	82	88	3	235	29	29	14	26	1.95
47804960--47805062	37	2.8	37	90	0	170	25	31	20	23	1.98
47805235--47805687	48	9.4	48	94	0	771	29	27	8	35	1.86
47815600--47815715	58	2.0	58	96	0	214	41	10	12	36	1.76
47820181--47820268	43	2.0	43	86	0	122	34	17	11	37	1.85
47825800--47826013	54	4.0	54	75	8	193	33	10	18	37	1.85
47825805--47826013	81	2.6	80	75	10	201	33	10	19	36	1.86
47825824--47826003	27	6.7	27	83	9	160	31	10	20	38	1.85
47830131--47830204	29	2.6	29	86	4	96	24	17	32	25	1.97
47857104--47857164	21	3.0	21	92	2	97	14	36	27	21	1.93
47859605--47859678	29	2.6	29	86	4	96	25	31	16	27	1.96
47864713--47864971	120	2.2	120	80	8	280	26	21	25	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47864713--47864945	40	5.8	40	86	6	260	26	21	26	26	2.00
47872669--47872884	40	5.7	40	80	14	217	25	22	27	25	2.00
47878837--47878910	29	2.6	29	82	4	87	25	29	16	28	1.97
47883187--47883679	27	18.3	27	83	5	559	27	21	9	40	1.85
47883684--47883744	27	2.3	27	94	0	104	32	18	18	31	1.94
47884620--47884815	27	7.3	27	85	0	221	27	18	17	36	1.94
47884623--47884815	81	2.4	81	84	1	253	27	19	17	36	1.94
47884820--47885311	27	18.3	27	83	5	557	40	9	21	27	1.85
47884820--47885311	81	6.1	81	84	4	625	40	9	21	27	1.85
47887312--47887344	17	1.9	17	88	11	50	33	0	9	57	1.30
47887859--47887894	18	1.9	19	94	5	65	41	0	2	55	1.14
47887859--47887900	18	2.2	18	87	8	57	45	2	2	50	1.27
47888474--47888509	18	2.0	18	100	0	72	27	11	16	44	1.82
47891366--47891577	46	4.6	45	79	11	198	23	29	19	27	1.98
47895518--47895571	27	2.0	27	92	0	90	27	11	22	38	1.88
47902678--47902874	46	4.3	45	76	13	145	24	29	18	26	1.98
47908745--47908888	39	3.7	39	91	0	234	22	22	27	27	1.99
47912563--47912641	28	2.8	28	90	0	113	35	11	24	29	1.90
47921474--47921527	28	1.9	28	96	0	99	25	9	29	35	1.87
47924466--47924734	46	5.8	45	75	17	239	30	27	18	23	1.98
47924473--47924738	93	2.9	93	93	0	442	29	28	19	23	1.98
47927371--47927555	40	4.6	39	83	5	194	23	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47927424--47927578	79	2.0	79	82	7	190	25	20	27	27	1.99
47933466--47933727	90	2.8	93	92	3	440	28	29	19	21	1.98
47933512--47933677	47	3.6	47	74	12	191	28	30	19	21	1.98
47933458--47933723	46	5.8	46	73	14	235	29	29	19	21	1.98
47940338--47940390	28	1.9	28	84	3	72	24	22	22	30	1.99
47940365--47940447	34	2.4	34	91	0	139	21	25	26	26	2.00
47940984--47941022	17	2.1	20	86	13	57	20	43	25	10	1.83
47944959--47945018	28	2.1	28	87	0	84	28	13	28	30	1.94
47946414--47946459	22	2.0	23	87	4	67	36	4	19	39	1.72
47953630--47953687	28	2.0	29	87	9	84	17	43	20	18	1.89
47958352--47958546	38	5.0	38	87	3	248	30	26	22	21	1.98
47962654--47962751	29	3.4	27	75	9	88	30	26	19	23	1.98
47962919--47963128	43	4.9	43	92	0	339	31	33	23	11	1.90
47964690--47964884	38	5.0	38	86	3	239	31	25	21	21	1.98
47971964--47972037	37	2.0	37	82	15	91	41	24	8	25	1.82
47975622--47975956	27	12.4	27	85	0	427	40	19	8	32	1.81
47975629--47976036	27	15.2	26	82	5	384	38	19	8	32	1.82
47975640--47976092	27	16.8	26	76	10	128	39	20	8	32	1.82
47976074--47976241	27	6.3	27	82	7	159	33	19	20	26	1.96
47976675--47976726	22	2.4	22	83	6	61	21	25	23	30	1.99
47976885--47976986	27	3.8	27	83	5	107	19	22	20	37	1.95
47977146--47977242	6	15.8	6	74	16	83	19	18	15	46	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47977134--47977258	31	4.1	31	85	3	155	19	17	16	47	1.83
47979181--47979680	27	18.6	27	83	1	583	40	19	7	32	1.80
47979181--47979738	54	10.4	53	82	5	503	39	19	8	32	1.81
47979720--47979886	27	6.3	27	80	7	164	34	19	20	25	1.96
47980316--47980377	22	2.9	21	80	7	70	20	22	22	33	1.97
47980536--47980637	27	3.8	27	80	5	98	19	22	19	38	1.94
47980797--47980893	6	15.8	6	74	16	83	19	18	15	46	1.84
47980785--47980909	31	4.1	31	85	3	155	19	17	16	47	1.83
47982482--47982787	48	6.4	48	77	9	284	23	28	18	29	1.98
47982516--47982785	96	2.8	96	85	3	339	24	28	18	28	1.98
47982482--47982797	144	2.2	144	84	3	386	24	28	18	28	1.98
47992436--47992562	60	2.2	58	78	5	130	38	20	21	19	1.94
47996032--47996076	17	2.6	17	89	0	72	28	31	28	11	1.91
47999552--47999640	43	2.1	43	80	2	99	31	16	20	31	1.95
47999774--47999805	16	1.9	17	93	6	57	31	9	15	43	1.78
48002649--48002680	15	2.1	15	100	0	64	40	21	0	37	1.54
48003983--48004033	26	2.0	26	96	0	93	11	23	35	29	1.90
48003906--48004169	103	2.6	103	92	3	426	18	19	31	30	1.96
48011456--48011507	27	1.9	27	96	0	95	13	25	32	28	1.93
48011392--48011643	102	2.5	103	91	3	411	19	21	28	30	1.97
48013119--48013285	56	3.0	56	89	1	246	31	25	15	26	1.96
48017099--48017175	25	3.1	25	98	0	145	25	24	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48022107--48022337	40	5.8	40	89	1	313	25	24	27	22	2.00
48026993--48027072	37	2.2	37	95	0	142	41	11	6	41	1.66
48037679--48037726	15	3.2	15	77	11	53	41	0	4	54	1.20
48042747--48042920	49	3.6	47	75	15	142	27	32	16	24	1.96
48042738--48043103	140	2.6	142	76	9	374	25	30	17	26	1.97
48043959--48043984	9	2.9	9	100	0	52	65	23	0	11	1.25
48052448--48052497	26	1.9	26	95	0	91	42	18	8	32	1.79
48063754--48063808	24	2.3	24	78	6	58	63	3	0	32	1.12
48065495--48065791	40	7.5	40	86	2	359	26	27	22	23	2.00
48071137--48071319	79	2.3	81	82	7	214	24	22	27	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253