genome.fa.s4.2.7.7.80.10.50.1000.157.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  157  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50715750--50715900	28	5.4	28	92	1	223	33	28	11	25	1.92
50723953--50724103	28	5.4	28	92	1	223	33	28	11	25	1.92
50731618--50731660	19	2.3	19	95	0	77	27	23	32	16	1.96
50733215--50733280	32	2.1	32	88	0	96	66	12	3	18	1.36
50737849--50737896	15	3.1	16	70	11	55	20	27	33	18	1.96
50738740--50738769	14	2.1	15	93	6	53	46	0	30	23	1.52
50741033--50741084	28	1.9	26	84	7	68	46	17	13	23	1.83
50742978--50743010	16	2.1	16	94	0	57	36	24	9	30	1.86
50749261--50749396	68	2.0	68	98	0	263	20	11	33	34	1.88
50750469--50750546	29	2.7	29	95	0	138	37	23	23	16	1.94
50775939--50776010	37	1.9	37	91	0	117	29	30	18	22	1.97
50776157--50776786	48	13.0	48	92	4	969	30	25	6	36	1.82
50776157--50776786	98	6.5	96	91	3	969	30	25	6	36	1.82
50785911--50785938	13	2.2	13	100	0	56	21	32	28	17	1.96
50787519--50787548	15	1.9	16	93	6	53	33	0	0	66	0.92
50787823--50787861	3	13.0	3	94	0	69	33	30	0	35	1.58
50803298--50803429	46	2.8	48	77	7	135	29	18	29	21	1.97
50803302--50803525	97	2.3	95	80	7	231	29	20	28	20	1.98
50803400--50803525	48	2.6	49	81	9	150	29	23	27	19	1.98
50809030--50809134	43	2.4	43	83	0	129	32	25	17	24	1.97
50818477--50818664	29	6.6	29	73	2	173	18	16	34	30	1.93
50818447--50818567	57	2.1	57	89	0	179	19	19	32	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50818476--50818664	86	2.2	86	88	1	281	19	16	34	30	1.93
50818561--50818719	57	2.8	57	85	1	219	20	16	33	29	1.95
50822424--50822568	48	3.0	47	83	7	159	24	26	17	31	1.97
50837153--50837303	28	5.4	28	91	1	214	33	27	11	26	1.92
50839174--50839282	48	2.3	48	87	3	148	22	28	20	28	1.99
50841949--50842022	35	2.2	33	88	7	105	37	5	9	47	1.59
50844034--50844157	41	3.0	42	72	12	128	25	16	28	30	1.96
50843999--50844166	43	4.0	43	70	9	128	24	16	27	32	1.96
50856848--50856926	37	2.1	37	84	9	99	24	30	18	26	1.98
50857047--50857449	47	8.5	47	91	3	603	29	30	7	32	1.86
50857045--50857449	96	4.3	94	92	3	625	29	30	7	32	1.86
50859973--50860195	40	5.6	40	90	2	304	26	27	21	24	1.99
50860501--50860579	29	2.7	29	86	5	106	27	32	15	24	1.95
50862938--50862975	15	2.4	16	86	4	51	31	7	0	60	1.25
50864748--50864964	40	5.5	40	91	3	316	24	23	27	24	2.00
50864744--50864964	119	1.9	119	87	5	331	25	22	27	24	2.00
50872835--50873050	40	5.5	40	91	3	314	25	22	27	24	2.00
50874443--50874471	14	2.0	15	93	6	51	37	6	0	55	1.27
50874710--50874812	28	3.7	29	70	10	72	33	8	2	54	1.46
50874864--50874990	3	43.3	3	68	13	68	31	7	0	60	1.29
50874886--50874933	16	3.1	15	88	8	69	31	6	0	62	1.20
50874907--50874996	27	3.5	26	73	11	78	30	5	1	63	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50874919--50874962	22	1.9	23	90	9	72	36	2	2	59	1.23
50875102--50875171	10	7.0	10	74	19	58	37	0	1	61	1.05
50875091--50875136	20	2.3	20	88	0	65	36	0	6	56	1.25
50875109--50875164	14	3.7	14	75	20	51	35	0	1	62	1.06
50877467--50877529	31	2.0	31	96	0	117	44	4	14	36	1.66
50881541--50881579	19	2.1	19	100	0	78	41	5	15	38	1.69
50883558--50883607	11	4.5	11	78	9	57	66	0	0	34	0.92
50885227--50885257	12	2.6	12	89	0	53	90	0	9	0	0.46
50885528--50885578	16	3.2	16	72	2	50	52	0	0	47	1.00
50885696--50885740	13	3.6	13	77	22	51	40	2	0	57	1.11
50886267--50886300	9	3.7	9	88	4	50	41	0	0	58	0.98
50889621--50889650	15	2.0	15	100	0	60	26	20	20	33	1.97
50892602--50892805	43	4.8	42	78	5	135	26	17	23	32	1.96
50900237--50900400	43	3.8	43	76	5	163	27	14	25	32	1.95
50912689--50912742	27	2.0	27	100	0	108	33	37	3	25	1.74
50913973--50914007	12	2.9	12	100	0	70	8	8	42	40	1.66
50914496--50914553	30	1.9	30	96	0	107	39	25	10	24	1.87
50919360--50919417	28	2.1	28	100	0	116	25	34	13	25	1.93
50919635--50919669	16	2.2	16	89	0	52	11	17	25	45	1.81
50931999--50932183	40	4.6	40	86	2	255	25	23	25	24	2.00
50940086--50940306	40	5.6	40	81	3	241	25	23	26	24	2.00
50956667--50956703	20	1.9	20	88	5	58	40	8	2	48	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50963467--50963842	47	7.9	47	94	2	601	31	8	30	29	1.87
50963467--50963842	96	3.9	96	93	3	618	31	8	30	29	1.87
50968253--50968432	46	3.8	46	76	11	193	21	20	29	29	1.98
50968247--50968425	97	1.8	97	92	2	306	21	19	29	29	1.98
50968742--50968824	40	2.1	40	100	0	166	25	9	16	48	1.77
50974852--50974958	27	4.0	27	88	0	151	35	18	18	27	1.95
50974944--50975068	27	4.7	27	76	5	92	40	21	8	29	1.82
50975351--50975380	15	2.0	15	93	0	51	6	23	20	50	1.71
50976410--50976446	19	1.9	19	94	0	65	32	18	18	29	1.96
50978356--50978638	119	2.4	118	89	3	433	44	1	4	48	1.34
50978463--50978497	18	2.0	17	88	5	52	45	0	0	54	0.99
50978582--50978616	18	2.0	17	88	5	52	45	0	0	54	0.99
50978582--50978636	15	3.4	16	80	16	53	47	0	1	50	1.11
50978852--50978919	16	4.2	16	96	0	127	38	35	0	26	1.57
50978933--50979236	27	11.3	27	77	4	231	40	19	8	31	1.82
50979684--50979735	22	2.4	21	72	15	52	23	26	19	30	1.98
50979950--50979997	22	2.2	22	84	0	60	8	16	27	47	1.75
50981754--50981904	28	5.4	28	92	1	232	27	11	27	33	1.91
50992142--50992170	14	2.1	14	100	0	58	48	37	6	6	1.57
50993639--50993822	40	4.6	40	82	8	223	25	27	22	25	2.00
50993639--50993823	79	2.3	82	83	7	229	25	27	22	24	2.00
50996055--50996150	27	3.6	27	82	0	111	20	21	20	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50996055--50996175	54	2.3	52	81	2	125	20	20	20	38	1.94
50996138--50996185	25	1.9	25	91	0	78	18	16	22	41	1.90
51013330--51013385	23	2.5	22	85	2	85	32	17	21	28	1.96
51016294--51016447	41	3.8	41	86	0	209	19	28	18	33	1.95
51016294--51016447	82	1.9	82	90	0	245	19	28	18	33	1.95
51016344--51016447	20	5.1	20	64	9	66	18	29	18	33	1.95
51028676--51028700	3	8.3	3	100	0	50	64	0	0	36	0.94
51033561--51033657	34	2.9	34	80	11	96	22	22	25	28	1.99
51039315--51039384	6	11.5	6	90	3	95	77	1	4	17	1.01
51040309--51040338	14	2.1	15	93	6	53	63	13	10	13	1.52
51044740--51044843	55	1.9	55	82	4	129	15	25	32	25	1.95
51053490--51053668	85	2.1	85	100	0	358	37	8	27	26	1.85
51054835--51055019	40	4.7	40	82	6	216	24	22	28	25	1.99
51054888--51055042	79	2.0	79	82	7	190	25	20	27	25	1.99
51057162--51057194	15	2.2	15	94	0	57	57	0	0	42	0.98
51057427--51057484	12	4.9	12	76	14	50	55	3	0	41	1.17
51057554--51057635	32	2.6	30	81	11	85	48	7	3	40	1.48
51061248--51061468	40	5.6	40	86	3	295	28	26	22	22	1.99
51067716--51067900	40	4.7	40	84	7	227	23	22	28	25	1.99
51067716--51067898	79	2.3	81	85	7	241	24	22	27	25	2.00
51067717--51067933	79	2.7	78	79	12	237	25	21	27	25	1.99
51071449--51071773	48	6.8	48	92	0	515	34	6	27	31	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51071449--51071773	144	2.3	144	96	0	587	34	6	27	31	1.82
51071821--51071919	37	2.7	37	95	0	171	25	18	31	25	1.97
51073526--51073580	25	2.2	25	90	6	85	27	30	14	27	1.95
51073744--51074144	40	10.0	40	94	0	676	27	30	22	20	1.98
51074409--51074433	12	2.1	12	100	0	50	44	8	8	40	1.63
51080866--51081041	46	3.8	46	79	10	196	19	20	30	29	1.97
51080862--51081034	93	1.9	93	92	0	292	19	20	31	28	1.97
51087514--51087646	49	2.7	49	84	4	162	27	21	27	23	1.99
51090183--51090366	39	4.7	39	93	2	280	29	29	22	17	1.97
51090439--51090520	28	2.9	28	83	0	101	29	24	10	35	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253