genome.fa.s4.2.7.7.80.10.50.1000.194.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  194  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63613941--63613988	5	9.6	5	100	0	96	58	0	0	41	0.98
63614618--63614655	20	1.9	20	100	0	76	31	42	18	7	1.79
63614649--63614752	29	3.6	29	82	10	122	20	33	24	22	1.97
63620039--63620322	59	4.7	58	67	18	150	43	2	4	49	1.36
63620032--63620322	120	2.4	122	89	4	462	43	2	4	49	1.35
63620266--63620302	19	2.0	19	85	15	51	45	0	0	54	1.00
63620467--63620557	45	2.0	45	85	2	121	37	28	6	27	1.82
63620538--63620606	16	4.2	16	96	3	129	37	37	0	24	1.56
63620538--63620606	33	2.1	32	97	2	129	37	37	0	24	1.56
63623569--63623597	12	2.3	13	94	5	51	24	0	0	75	0.80
63627423--63627458	18	2.0	18	100	0	72	55	11	11	22	1.66
63637178--63637220	18	2.4	18	84	0	59	37	23	23	16	1.94
63637889--63637971	42	2.0	42	90	0	130	43	15	12	28	1.83
63637999--63638042	19	2.4	18	92	7	79	45	13	2	38	1.56
63646943--63647028	18	4.8	18	76	7	77	17	18	20	43	1.89
63650845--63650930	40	2.2	40	93	0	145	47	11	6	33	1.67
63659039--63659087	21	2.3	20	82	10	53	53	14	14	18	1.74
63659546--63659659	54	2.1	54	98	1	221	33	14	17	35	1.90
63659553--63659653	28	3.7	28	89	10	172	32	15	15	35	1.90
63662092--63662139	26	1.9	25	83	8	62	45	8	14	31	1.74
63667440--63667469	13	2.3	13	94	0	51	33	6	10	50	1.62
63686822--63686877	6	9.5	6	86	7	71	17	1	1	78	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63686818--63686865	16	3.1	15	83	16	62	18	0	2	79	0.84
63686818--63686897	6	15.2	5	74	19	58	20	2	1	76	0.97
63686818--63686887	17	4.2	16	82	13	72	20	2	1	75	1.00
63689806--63689830	13	1.9	13	100	0	50	44	0	8	48	1.32
63690320--63690379	29	2.1	29	96	0	111	65	13	5	16	1.44
63691644--63691686	18	2.5	17	81	7	52	32	13	0	53	1.41
63694031--63694125	47	2.0	47	91	2	156	29	13	13	43	1.83
63707021--63707092	27	2.7	26	82	8	90	36	11	23	29	1.89
63716571--63716620	20	2.5	21	75	12	52	44	14	4	38	1.63
63719754--63719839	45	1.9	45	82	0	109	43	11	20	24	1.85
63719976--63720066	27	3.4	27	69	6	85	35	16	27	20	1.94
63722807--63722879	26	2.8	25	83	6	92	30	15	12	42	1.83
63730028--63730139	31	3.6	31	82	2	127	44	5	16	33	1.71
63730023--63730139	62	1.9	62	82	3	146	43	5	17	32	1.74
63730736--63730944	105	2.0	105	95	0	373	30	18	15	35	1.92
63732345--63732371	13	2.1	13	100	0	54	14	37	33	14	1.88
63741474--63741515	21	2.1	20	82	8	50	40	21	7	30	1.80
63743409--63743445	18	2.1	18	100	0	74	43	16	10	29	1.82
63762307--63762491	48	3.9	47	69	16	148	28	19	23	28	1.98
63796188--63796217	14	2.2	13	94	5	51	40	20	6	33	1.78
63798553--63798614	22	2.6	24	77	7	65	27	4	22	45	1.73
63804231--63804295	32	2.1	31	91	2	103	38	15	0	46	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63812558--63812595	17	2.2	17	86	9	51	39	2	0	57	1.12
63812629--63812690	18	3.6	18	79	12	67	48	3	0	48	1.17
63812641--63812697	18	3.2	18	78	14	64	43	1	0	54	1.10
63812617--63812706	35	2.4	37	78	16	96	45	2	0	52	1.13
63812695--63812730	16	2.2	17	90	5	56	47	0	0	52	1.00
63812696--63812754	20	3.2	18	80	17	59	44	1	0	54	1.10
63813783--63813828	19	2.3	21	92	7	78	58	0	2	39	1.10
63819141--63819215	33	2.2	35	92	4	127	48	0	6	45	1.29
63819739--63819829	34	2.7	34	83	6	123	45	1	15	38	1.54
63819713--63819838	34	3.7	35	76	13	120	40	0	14	44	1.50
63819933--63820173	124	1.9	123	81	5	288	37	16	15	30	1.90
63823215--63823271	25	2.3	23	81	18	71	50	3	1	43	1.29
63823670--63823712	17	2.4	18	92	3	70	41	11	27	18	1.85
63829897--63829956	10	6.0	10	84	11	70	66	1	8	23	1.28
63832862--63833387	49	10.9	49	93	2	883	32	8	29	29	1.86
63832862--63833387	96	5.5	97	94	2	870	32	8	29	29	1.86
63832862--63833387	145	3.6	145	95	1	907	32	8	29	29	1.86
63835393--63835440	15	3.1	15	83	13	62	77	0	2	20	0.88
63839097--63839151	10	5.7	9	82	8	56	70	1	5	21	1.16
63845082--63845131	25	2.0	25	96	0	91	50	24	8	18	1.73
63850538--63850619	41	2.0	41	85	0	110	37	30	18	13	1.89
63850559--63850706	38	3.8	38	79	6	147	37	31	18	12	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63862164--63862258	40	2.4	40	77	10	115	35	35	12	15	1.86
63866667--63866698	16	2.1	15	94	5	55	40	31	15	12	1.85
63866658--63866774	41	2.9	41	83	3	141	36	26	18	17	1.94
63866666--63866806	38	3.6	38	81	4	140	35	28	19	17	1.94
63868172--63868223	3	17.3	3	87	0	77	1	0	32	65	1.04
63870977--63871027	25	2.0	25	96	0	93	25	11	13	49	1.76
63870934--63871070	68	2.0	68	95	0	247	21	11	16	50	1.77
63871005--63871089	43	2.0	43	92	0	143	21	9	18	50	1.75
63872349--63872655	27	11.4	26	76	8	217	35	20	18	24	1.95
63872329--63872655	54	6.1	54	83	3	347	35	21	18	24	1.96
63872329--63872655	81	4.0	81	80	3	356	35	21	18	24	1.96
63872792--63872871	27	3.0	25	82	8	88	21	21	22	35	1.96
63872792--63872861	27	2.6	27	84	8	90	21	21	22	34	1.97
63873059--63873124	33	2.0	33	84	0	87	28	22	22	25	1.99
63874144--63874192	26	1.9	25	87	4	71	44	4	16	34	1.66
63876327--63876367	21	2.0	21	85	9	57	24	0	4	70	1.06
63891862--63891920	30	2.0	30	86	0	82	40	8	23	27	1.83
63899210--63899253	14	3.3	14	81	12	56	34	11	20	34	1.88
63899217--63899241	12	2.1	12	100	0	50	32	8	16	44	1.76
63901828--63901864	12	3.2	12	92	3	58	35	0	16	48	1.46
63901828--63901864	18	2.1	17	90	5	56	35	0	16	48	1.46
63902746--63902799	16	3.5	15	78	9	56	68	1	1	27	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63902746--63902794	21	2.3	20	76	10	53	69	2	2	26	1.10
63906946--63906992	21	2.2	21	80	0	58	17	10	19	53	1.72
63907094--63907138	20	2.2	20	88	0	63	40	15	20	24	1.91
63912873--63912992	43	2.8	42	78	2	141	30	14	24	30	1.94
63923573--63923602	16	1.9	16	93	6	53	50	20	0	30	1.49
63934260--63934441	40	4.6	40	79	9	185	25	21	27	25	2.00
63934310--63934474	79	2.1	79	80	6	183	26	21	26	25	1.99
63936183--63936208	12	2.2	12	100	0	52	15	7	34	42	1.75
63941530--63941659	55	2.4	55	80	7	147	24	26	30	19	1.98
63945620--63945647	13	2.2	13	100	0	56	14	32	35	17	1.90
63950591--63950645	27	2.0	27	82	6	67	20	18	23	38	1.93
63959524--63959567	17	2.6	17	96	0	79	22	25	0	52	1.48
63960795--63960831	18	2.1	18	100	0	74	37	10	32	18	1.86
63961740--63961799	31	1.9	31	100	0	120	30	23	6	40	1.80
63966601--63966638	19	2.0	20	85	15	53	39	23	0	36	1.55
63966867--63967037	46	3.7	46	77	4	191	29	26	21	22	1.99
63966868--63967038	93	1.8	93	91	0	279	29	27	21	22	1.99
63974613--63974698	45	1.9	45	83	4	111	23	20	22	33	1.97
63974613--63974704	22	4.1	22	72	13	80	22	20	21	34	1.96
63974680--63974731	26	2.0	25	82	10	61	28	21	19	30	1.97
63993515--63993564	25	2.0	25	96	0	91	38	4	18	40	1.69
63993738--63993788	26	2.0	26	88	0	75	45	15	17	21	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63997946--63998045	44	2.3	43	82	5	121	33	24	15	28	1.95
64003884--64003952	25	2.8	25	70	18	63	56	2	7	33	1.42
64004630--64004689	29	2.1	29	84	6	77	50	11	6	31	1.65
64005991--64006019	14	2.0	15	93	6	51	20	20	27	31	1.98
64007033--64007115	41	2.0	41	90	0	130	40	12	14	32	1.83
64013583--64013755	46	3.8	45	75	13	172	21	19	28	30	1.98
64013578--64013748	93	1.8	93	91	0	279	21	19	28	29	1.98
64016344--64016403	23	2.7	22	87	5	93	31	16	23	28	1.96
64030704--64030854	74	2.0	74	100	0	302	39	18	15	26	1.91
64067747--64067785	20	2.1	19	85	9	53	51	12	28	7	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253