genome.fa.s4.2.7.7.80.10.50.1000.215.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  215  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70937727--70937761	18	1.9	18	88	0	52	62	11	2	22	1.41
70941148--70941199	25	2.1	25	92	0	86	34	11	26	26	1.91
70941956--70942023	24	2.9	23	75	12	59	44	1	2	51	1.25
70941911--70942079	63	2.7	62	86	8	204	42	1	2	53	1.26
70942170--70942275	44	2.5	40	75	21	101	35	25	5	33	1.80
70942182--70942275	44	2.1	44	90	7	145	35	26	6	31	1.82
70942265--70942308	16	2.8	16	89	6	63	31	22	2	43	1.66
70943906--70943954	24	2.1	24	84	3	64	40	10	16	32	1.82
70943986--70944084	23	4.4	22	73	13	76	33	9	18	39	1.82
70943997--70944088	45	2.0	46	85	2	123	34	10	17	36	1.85
70944134--70944483	54	6.5	54	84	1	362	39	13	21	25	1.89
70944134--70944426	161	1.8	162	87	0	435	38	13	22	25	1.91
70944135--70944480	161	2.1	162	83	1	426	39	13	21	25	1.89
70956395--70956565	93	1.8	93	96	0	315	28	29	21	21	1.98
70956390--70956562	46	3.7	46	80	13	219	28	28	21	21	1.98
70964433--70964480	14	3.4	14	94	0	78	47	6	12	33	1.66
70965683--70965756	38	2.0	35	92	7	121	64	13	5	16	1.45
70968249--70968321	23	3.2	23	63	18	62	31	5	31	31	1.80
70968233--70968693	92	5.0	92	90	6	697	31	8	30	28	1.88
70968320--70968392	22	3.3	22	62	11	58	31	10	28	28	1.91
70968233--70968693	182	2.5	185	90	5	726	31	8	30	28	1.88
70968233--70968693	47	10.1	47	89	7	691	31	8	30	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70968810--70968889	38	2.1	38	88	2	117	25	18	31	25	1.98
70972282--70972464	79	2.3	81	84	7	232	24	22	27	25	2.00
70972283--70972466	40	4.6	40	83	9	216	23	22	28	25	2.00
70972335--70972489	79	2.0	79	84	7	208	25	21	27	25	1.99
70974525--70974694	92	1.8	93	89	3	272	29	29	20	21	1.98
70974520--70974691	46	3.7	47	80	11	203	30	28	19	21	1.98
70982550--70982597	14	3.4	14	94	0	78	47	6	12	33	1.66
70983810--70983885	37	2.0	38	94	2	136	64	13	5	17	1.45
70986598--70986666	27	2.6	27	83	0	84	34	21	26	17	1.95
70996168--70996227	31	1.9	31	86	6	86	48	10	13	28	1.74
70999018--70999053	17	2.1	17	90	10	56	69	2	0	27	1.02
71004840--71004895	24	2.3	24	96	0	103	30	0	35	33	1.58
71008414--71008438	8	3.1	8	100	0	50	16	0	0	84	0.63
71009053--71009102	25	2.1	25	82	14	61	52	12	0	36	1.39
71011954--71011985	15	2.1	15	94	0	55	28	21	6	43	1.77
71021153--71021208	22	2.5	22	76	0	58	62	19	7	10	1.50
71028514--71028582	35	2.0	35	97	0	129	37	5	13	43	1.67
71029101--71029134	17	2.0	17	88	0	50	35	5	17	41	1.74
71029820--71029857	10	3.8	10	83	13	51	23	7	2	65	1.32
71033430--71033853	46	9.3	45	82	7	464	20	21	14	43	1.87
71033496--71033843	91	3.8	91	93	0	597	18	21	15	43	1.87
71035958--71036005	11	4.2	11	79	10	51	62	2	0	35	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71043266--71043304	19	2.1	19	85	0	51	71	7	5	15	1.26
71043768--71043847	27	2.9	27	83	5	97	35	21	22	21	1.96
71043963--71044027	28	2.3	28	91	0	103	32	7	27	32	1.85
71045095--71045127	12	2.6	13	85	9	50	45	0	45	9	1.35
71047783--71047896	44	2.6	43	72	16	101	24	18	28	28	1.98
71051525--71051609	24	3.5	24	75	10	84	34	21	24	20	1.97
71051776--71051838	25	2.5	25	84	0	72	34	20	30	14	1.92
71052433--71052471	19	2.1	19	100	0	78	30	15	20	33	1.94
71053300--71053334	17	2.0	18	88	5	54	11	37	31	20	1.88
71054097--71054129	8	4.1	8	100	0	66	36	51	0	12	1.39
71055007--71055034	13	2.2	13	100	0	56	14	14	0	71	1.15
71061104--71061140	17	2.2	18	90	9	60	72	0	24	2	0.97
71061103--71061140	18	2.1	18	90	5	58	73	0	23	2	0.95
71064991--71065047	16	3.6	16	95	0	87	29	0	36	33	1.58
71065293--71065327	18	2.0	17	88	5	52	54	0	0	45	0.99
71065427--71065468	15	2.7	16	82	14	52	52	2	0	45	1.13
71065180--71065477	154	1.9	156	95	2	546	44	3	5	47	1.41
71065436--71065570	15	8.9	15	67	24	70	51	3	2	42	1.32
71065219--71065534	154	2.0	155	83	7	401	46	4	3	45	1.39
71065496--71065586	44	2.1	43	81	6	103	53	3	2	40	1.29
71065476--71065694	120	1.8	119	89	6	345	50	5	3	40	1.44
71065655--71065693	17	2.5	15	80	15	51	51	0	5	43	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71065660--71065693	17	2.0	17	94	0	59	50	0	5	44	1.26
71065726--71065920	93	2.1	92	88	4	286	47	4	4	44	1.41
71067320--71067346	11	2.5	11	100	0	54	51	18	7	22	1.70
71069590--71069620	15	2.1	15	100	0	62	45	0	19	35	1.51
71079634--71079684	22	2.4	21	75	9	50	23	0	7	68	1.15
71079604--71079716	41	2.6	42	76	19	108	27	0	7	65	1.18
71079666--71079713	26	1.9	24	87	8	69	29	0	6	64	1.18
71079559--71079718	44	3.8	39	70	18	106	28	1	5	65	1.21
71079947--71080016	20	3.5	20	90	0	113	42	4	11	41	1.60
71080518--71080586	3	23.3	3	76	8	70	1	28	1	68	1.07
71080962--71081000	2	19.5	2	83	0	51	41	7	0	51	1.31
71080962--71081000	12	3.2	12	88	0	60	41	7	0	51	1.31
71083760--71083823	18	3.5	19	81	10	71	64	9	1	25	1.33
71084015--71084052	17	2.2	18	85	4	51	26	2	5	65	1.27
71084538--71084589	11	4.9	11	83	9	72	28	28	0	42	1.56
71084532--71084589	20	2.7	21	86	10	82	31	27	0	41	1.56
71084617--71084647	15	2.1	15	93	0	53	22	6	0	70	1.09
71086385--71086427	18	2.4	18	92	0	68	16	27	11	44	1.82
71086812--71087658	116	7.3	116	96	0	1532	40	4	9	46	1.54
71090677--71091200	126	4.2	126	89	1	807	27	21	17	34	1.95
71091285--71091493	95	2.2	98	83	6	266	40	18	1	39	1.60
71108179--71108233	23	2.3	23	96	3	101	54	3	10	30	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71110453--71110479	12	2.2	12	100	0	54	14	11	29	44	1.80
71111190--71111350	69	2.3	68	88	2	232	32	16	23	27	1.96
71111190--71111341	33	4.4	35	73	7	132	31	16	23	28	1.96
71113078--71113130	22	2.4	22	96	0	97	26	15	16	41	1.88
71119180--71119277	42	2.3	42	85	0	133	24	33	24	17	1.96
71120351--71120391	20	2.0	21	90	4	66	75	0	24	0	0.80
71120352--71120398	21	2.2	21	85	7	60	74	2	21	2	1.03
71120424--71120505	40	2.0	40	100	0	164	29	12	12	46	1.77
71122362--71122589	46	5.0	46	90	1	305	39	13	24	22	1.91
71134368--71134413	23	2.0	23	84	12	60	45	10	6	36	1.65
71134375--71134419	23	2.0	23	82	8	56	40	13	8	37	1.76
71151053--71151100	21	2.3	20	82	10	60	43	0	2	54	1.12
71153112--71153268	43	3.7	43	79	5	149	25	17	26	31	1.97
71156335--71156428	48	2.0	47	85	6	127	47	1	2	48	1.20
71156371--71156405	15	2.4	15	90	4	54	48	0	0	51	1.00
71156382--71156466	39	2.2	39	87	2	118	44	3	3	48	1.37
71158233--71158271	18	2.2	18	90	0	60	12	15	30	41	1.85
71165036--71165062	9	3.0	9	100	0	54	77	0	0	22	0.76
71166156--71168642	355	7.0	355	99	0	4920	40	19	10	29	1.84
71168744--71168788	16	2.9	15	83	9	63	4	11	0	84	0.76
71168808--71168991	99	1.9	99	85	0	260	34	28	12	24	1.92
71168799--71169003	99	2.1	98	80	3	230	35	25	11	27	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71170196--71170278	5	17.0	5	89	9	127	62	0	0	37	0.95
71173145--71173171	9	3.0	9	100	0	54	77	0	0	22	0.76
71175686--71175719	11	3.1	11	91	0	50	17	8	8	64	1.47
71182253--71182316	32	2.0	32	93	0	110	35	6	18	39	1.76
71183910--71183935	13	2.0	13	100	0	52	7	7	7	76	1.15
71188446--71188476	13	2.4	13	94	0	53	9	35	12	41	1.76
71188479--71188517	18	2.3	17	86	8	53	38	5	12	43	1.65
71189259--71189288	15	2.0	15	93	0	51	23	6	46	23	1.75
71192648--71192678	15	2.1	15	93	0	53	35	6	32	25	1.82
71192835--71192873	18	2.3	17	86	8	53	38	5	12	43	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253