genome.fa.s4.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  103  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32007823--32007866	22	2.0	22	95	0	79	34	4	36	25	1.76
32009731--32009788	10	5.7	10	76	11	64	29	27	13	29	1.94
32009731--32009791	20	3.0	20	83	9	79	27	26	13	32	1.93
32014837--32014890	15	3.7	14	80	7	63	75	1	20	1	0.98
32017215--32017266	23	2.3	22	75	21	54	9	23	1	65	1.32
32017224--32017279	12	4.7	12	74	14	53	12	23	0	64	1.27
32022405--32022451	20	2.3	20	81	0	58	29	34	12	23	1.92
32054825--32054873	20	2.3	20	82	10	53	32	8	14	44	1.74
32058126--32058225	6	16.3	6	72	15	71	48	12	20	20	1.80
32058135--32058225	37	2.5	37	88	0	137	48	10	20	19	1.79
32058341--32058422	28	3.0	26	78	15	76	37	21	20	19	1.94
32058581--32058645	22	3.0	22	77	8	69	30	23	24	21	1.99
32059160--32059298	27	5.2	27	80	6	131	26	19	15	38	1.92
32059160--32059298	53	2.6	54	78	3	147	26	19	15	38	1.92
32064295--32064453	35	4.5	35	80	0	174	28	8	19	42	1.81
32066289--32066348	27	2.3	26	85	2	75	35	20	23	21	1.96
32078255--32078314	27	2.3	26	85	2	75	35	20	23	21	1.96
32078282--32078423	67	2.1	67	86	7	196	32	22	26	18	1.97
32080935--32080968	17	2.0	17	94	0	59	55	0	5	38	1.24
32082147--32082282	24	5.7	24	82	3	150	22	11	30	35	1.90
32082147--32082283	72	1.9	72	87	0	202	22	11	30	35	1.90
32082147--32082300	72	2.1	72	84	0	191	23	11	29	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32091286--32091346	10	6.1	10	74	12	54	32	13	24	29	1.93
32091287--32091347	20	3.0	20	83	9	79	32	13	26	27	1.93
32093418--32093452	18	1.9	18	88	11	54	22	20	0	57	1.41
32094349--32094397	14	3.6	13	78	13	55	6	14	6	73	1.22
32094331--32094409	26	2.9	27	85	9	99	8	15	5	70	1.29
32094391--32094427	12	3.1	12	92	0	56	13	5	5	75	1.15
32095777--32095837	10	6.1	10	74	12	54	32	13	24	29	1.93
32095778--32095838	20	3.0	20	83	9	79	32	13	26	27	1.93
32096899--32096959	12	4.8	12	86	11	77	16	9	3	70	1.27
32106604--32106659	27	2.1	26	90	9	87	39	17	8	33	1.81
32111801--32111895	30	3.2	30	73	0	82	30	16	26	26	1.97
32112337--32112404	12	5.6	12	85	5	75	69	7	7	16	1.35
32112371--32112404	14	2.5	14	95	4	61	73	5	5	14	1.21
32113260--32113316	5	11.0	5	78	17	55	80	0	17	1	0.79
32113264--32113312	25	1.9	25	87	4	71	81	0	16	2	0.78
32113260--32113314	16	3.5	15	90	5	74	81	0	16	1	0.77
32113260--32113303	6	8.2	6	83	16	53	81	0	18	0	0.68
32113264--32113316	21	2.5	20	85	8	79	81	0	16	1	0.79
32113397--32113459	24	2.6	24	79	0	72	63	0	25	11	1.27
32113397--32113441	12	3.8	12	81	0	54	66	0	24	8	1.20
32115654--32115700	20	2.3	20	85	0	67	29	36	12	21	1.91
32120458--32120498	17	2.4	18	80	8	50	14	24	4	56	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32120429--32120482	24	2.2	25	78	15	60	11	22	3	62	1.43
32122731--32122759	15	1.9	15	100	0	58	13	6	6	72	1.26
32122738--32122784	12	3.6	14	86	8	55	17	6	2	74	1.12
32125839--32126100	39	6.7	40	86	6	281	24	26	21	26	2.00
32134543--32134574	15	2.0	17	88	11	50	28	0	9	62	1.26
32147275--32147308	11	2.9	12	86	8	52	17	2	2	76	1.04
32149067--32149162	30	3.2	30	71	10	90	28	15	28	28	1.96
32157140--32157221	30	2.7	30	70	7	85	26	17	28	28	1.97
32160960--32161604	47	13.7	47	95	0	1105	32	8	29	29	1.87
32161723--32161801	37	2.1	37	90	0	122	24	18	31	25	1.98
32164698--32164793	30	3.2	30	68	11	81	27	15	29	28	1.96
32165341--32165408	16	4.2	16	96	0	127	26	0	35	38	1.57
32165624--32165665	15	2.7	16	82	14	52	52	2	0	45	1.13
32165633--32165674	15	2.9	15	82	10	52	52	0	0	47	1.00
32165840--32165900	28	2.2	28	85	5	81	50	3	0	45	1.17
32183523--32183570	14	3.4	14	85	0	60	18	31	6	43	1.75
32183965--32184106	71	2.0	71	90	5	225	39	6	8	45	1.60
32184104--32184146	11	3.8	12	84	12	63	72	2	4	20	1.14
32192481--32192542	32	1.9	32	96	0	115	38	22	9	29	1.86
32206566--32206763	54	3.7	53	82	6	238	27	15	28	29	1.96
32206565--32206763	27	7.4	27	83	6	208	27	15	28	29	1.96
32214681--32214885	27	7.6	27	83	4	216	26	15	28	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32214682--32214885	54	3.8	54	82	5	241	26	15	28	29	1.96
32221280--32221327	14	3.4	14	82	0	51	41	8	31	18	1.80
32227799--32227847	10	4.8	10	83	14	64	10	2	6	81	0.94
32227799--32227847	21	2.3	22	89	6	75	10	2	6	81	0.94
32228199--32228246	14	3.4	14	82	0	51	43	4	31	20	1.71
32230028--32230075	20	2.4	20	67	0	51	33	18	27	20	1.96
32239142--32239175	11	3.1	11	91	8	52	82	0	11	5	0.83
32239116--32239227	52	2.2	52	95	0	197	73	2	15	8	1.19
32239134--32239222	17	5.2	17	71	14	67	77	2	13	6	1.06
32245263--32245607	47	7.3	47	92	2	491	27	31	9	32	1.89
32255130--32255169	19	2.1	19	100	0	80	5	25	17	52	1.64
32262975--32263141	46	3.6	45	71	16	144	21	14	28	35	1.93
32262961--32263133	93	1.9	93	90	2	276	20	16	29	33	1.94
32265107--32265151	24	1.9	23	82	13	56	33	6	26	33	1.83
32275871--32275922	23	2.3	22	75	21	54	9	23	1	65	1.32
32283927--32283963	18	2.0	19	89	5	58	54	13	10	21	1.69
32295459--32295556	30	3.3	30	72	5	99	28	25	16	29	1.97
32296688--32296714	10	2.7	10	100	0	54	40	29	11	18	1.85
32296688--32296736	10	4.8	10	85	5	53	36	32	8	22	1.84
32304783--32304871	44	2.0	44	100	0	178	37	22	13	26	1.91
32304782--32304855	22	3.2	25	61	28	63	39	22	12	25	1.89
32304966--32305033	21	3.2	20	80	12	66	75	2	16	5	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32305081--32305111	12	2.6	12	100	0	62	45	12	16	25	1.83
32305114--32305194	30	2.7	30	75	7	83	66	1	20	11	1.29
32305119--32305188	24	2.9	24	74	6	61	62	1	22	12	1.38
32307296--32307392	30	3.2	30	76	2	106	27	27	16	27	1.97
32309370--32309426	30	1.9	30	88	0	87	28	22	8	40	1.84
32327746--32327794	22	2.2	22	88	0	71	20	28	18	32	1.96
32327933--32327984	27	1.9	27	88	7	79	17	23	26	32	1.96
32331712--32331798	43	2.0	43	100	0	174	16	27	2	54	1.54
32333992--32334022	15	2.0	16	93	6	55	35	6	0	58	1.24
32336777--32336962	41	4.6	41	89	3	261	24	24	26	24	2.00
32336779--32336932	81	1.9	82	90	4	249	24	24	25	25	2.00
32340839--32340965	49	2.6	49	80	0	137	23	26	19	29	1.98
32346120--32346154	18	2.0	18	88	5	54	17	28	40	14	1.88
32348190--32348225	18	2.0	18	100	0	72	27	5	22	44	1.75
32353714--32353747	18	1.9	17	88	5	50	11	23	44	20	1.84
32355513--32355636	48	2.6	49	84	2	144	30	29	15	24	1.95
32357126--32357226	24	4.2	24	90	0	148	33	1	40	23	1.66
32362804--32362849	19	2.4	19	100	0	92	28	15	19	36	1.92
32367083--32367192	27	4.2	26	81	8	114	17	24	20	38	1.93
32367083--32367192	53	2.1	53	81	6	125	17	24	20	38	1.93
32374705--32374798	49	1.9	49	91	0	152	25	19	18	37	1.94
32376631--32376880	50	5.0	50	79	3	279	25	18	26	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32376739--32376823	28	3.2	28	63	24	76	27	16	27	29	1.97
32376640--32376825	101	1.8	101	90	2	302	25	19	25	28	1.99
32376637--32376880	101	2.4	99	81	6	287	25	18	26	29	1.98
32379415--32379530	42	2.8	42	77	0	106	26	28	18	26	1.98
32379563--32379671	49	2.2	49	80	1	130	25	29	17	27	1.97
32384325--32384384	30	2.0	29	93	3	102	25	15	23	36	1.93
32384356--32384454	39	2.4	40	81	13	112	24	17	26	32	1.97
32388593--32388640	15	3.3	15	73	5	53	29	0	27	43	1.55
32388587--32388630	14	3.1	14	74	6	52	27	0	34	38	1.57
32388587--32388646	29	2.1	29	93	0	102	28	0	30	41	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253