genome.fa.s4.2.7.7.80.10.50.1000.196.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  196  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64411938--64412038	47	2.1	47	85	3	132	23	17	20	37	1.94
64412093--64412243	39	3.9	39	82	1	187	43	10	10	35	1.74
64428321--64428354	16	2.2	15	89	5	50	67	0	0	32	0.91
64430205--64430292	25	3.5	25	76	3	79	25	17	19	38	1.92
64432107--64432170	27	2.3	28	76	10	69	54	7	0	37	1.29
64432157--64432192	5	7.2	5	96	0	63	61	0	0	38	0.96
64432527--64432567	9	4.4	9	87	6	64	53	14	0	31	1.41
64438573--64438628	6	9.0	6	94	5	94	16	3	0	80	0.85
64442484--64442516	17	1.9	17	88	11	50	30	21	0	48	1.50
64444830--64444870	22	1.9	21	90	5	64	51	0	0	48	1.00
64445533--64445619	42	2.1	42	100	0	174	27	11	19	41	1.86
64448831--64448855	13	1.9	13	100	0	50	4	40	32	24	1.73
64451522--64451555	16	2.1	17	88	5	52	35	14	0	50	1.44
64461572--64461610	17	2.3	17	90	0	60	46	2	2	48	1.29
64461581--64461692	58	1.9	58	81	3	136	53	2	1	41	1.25
64461634--64461797	72	2.3	72	87	5	224	50	3	2	43	1.33
64461669--64461819	72	2.1	72	93	2	259	50	3	2	43	1.32
64463069--64463101	12	2.8	12	90	4	50	48	3	15	33	1.60
64480217--64480322	26	4.2	26	89	4	171	32	6	24	36	1.81
64480217--64480322	50	2.1	52	92	3	180	32	6	24	36	1.81
64483444--64483473	12	2.6	12	94	5	53	10	23	53	13	1.69
64488335--64488442	26	4.2	26	91	0	171	32	7	24	36	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64489916--64489968	26	2.0	26	85	7	72	37	22	15	24	1.92
64493228--64493315	44	2.0	44	84	4	115	22	19	28	29	1.98
64495289--64495316	12	2.3	12	100	0	56	32	17	14	35	1.90
64506989--64507019	15	2.0	16	93	6	55	61	0	0	38	0.96
64510489--64510730	117	2.1	116	81	8	278	45	11	15	27	1.80
64512721--64513251	44	12.0	44	71	10	215	23	22	20	33	1.97
64513240--64513350	44	2.5	46	76	2	109	28	25	18	27	1.98
64513908--64514015	26	4.2	26	95	0	198	29	7	26	36	1.84
64514568--64514675	26	4.2	26	95	0	189	31	6	25	37	1.81
64513575--64514896	660	2.0	660	96	0	2423	34	11	22	32	1.89
64520066--64520241	46	3.8	45	79	11	196	21	19	29	29	1.98
64520063--64520233	93	1.8	93	92	2	290	21	20	29	28	1.98
64524546--64524653	26	4.2	26	91	0	180	33	6	24	36	1.81
64539654--64539725	36	2.0	36	100	0	144	41	27	16	13	1.87
64539956--64540000	16	2.8	16	80	10	56	71	4	0	24	1.05
64540261--64540294	18	1.9	18	88	5	52	58	8	0	32	1.29
64543636--64543672	20	2.0	20	89	10	60	43	0	0	56	0.99
64551648--64551708	25	2.4	25	83	0	77	19	14	22	42	1.88
64551694--64551756	25	2.5	25	82	10	92	20	7	30	41	1.81
64568165--64568266	51	2.0	50	83	7	125	41	11	19	27	1.86
64571005--64571044	13	3.1	13	100	0	80	15	37	32	15	1.88
64574392--64574417	12	2.2	12	100	0	52	50	7	7	34	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64583144--64583207	31	2.1	31	90	0	101	25	23	15	35	1.94
64583420--64583495	24	3.2	24	94	3	136	28	21	19	30	1.97
64583422--64583494	23	3.1	23	96	2	128	30	20	20	28	1.98
64583545--64583585	20	2.0	20	95	0	73	34	21	9	34	1.87
64591188--64591251	31	2.1	31	87	0	92	26	23	14	35	1.93
64591465--64591539	24	3.2	24	94	3	134	29	20	20	30	1.97
64591466--64591538	23	3.1	23	96	2	128	30	20	20	28	1.98
64591589--64591629	20	2.0	20	95	0	73	34	21	9	34	1.87
64597729--64597775	19	2.5	20	86	13	64	42	6	2	48	1.40
64597362--64597974	307	2.0	308	89	1	953	38	14	8	38	1.78
64606832--64607216	47	8.1	47	89	4	520	32	10	30	26	1.90
64606932--64607006	23	3.2	23	66	23	66	29	9	32	29	1.88
64607190--64607326	46	3.0	46	87	0	193	35	8	31	24	1.86
64607509--64607656	37	4.0	37	92	1	235	22	17	31	29	1.97
64608925--64609215	40	7.3	40	93	0	474	24	19	28	27	1.98
64609247--64609381	57	2.4	57	78	12	143	22	19	31	27	1.98
64613030--64613413	47	8.1	47	88	4	500	33	10	29	26	1.90
64613131--64613208	25	3.2	25	66	29	69	29	8	30	30	1.88
64613105--64613459	187	1.9	185	86	4	507	33	10	30	25	1.90
64613030--64613422	140	2.8	140	86	3	529	33	10	29	26	1.90
64613387--64613523	46	3.0	46	86	0	193	35	8	30	25	1.86
64613706--64613854	37	4.0	37	92	0	244	22	17	30	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64614664--64614834	39	4.4	39	93	0	297	28	28	22	20	1.99
64627131--64627240	27	4.1	27	78	10	118	38	21	23	16	1.93
64627642--64627673	8	4.0	8	91	0	55	15	25	12	46	1.81
64634999--64635103	27	3.9	28	81	9	119	37	20	24	18	1.94
64643470--64643523	24	2.3	23	84	9	74	27	22	18	31	1.97
64645433--64645598	46	3.6	46	74	13	178	22	19	27	30	1.98
64645423--64645593	93	1.8	93	91	0	279	22	20	27	29	1.99
64654773--64654824	23	2.3	23	96	0	95	28	23	13	34	1.92
64664924--64665146	40	5.6	40	83	6	231	25	26	21	26	1.99
64664924--64665142	79	2.7	80	78	10	214	26	25	21	27	1.99
64664924--64665146	120	1.9	120	83	7	292	25	26	21	26	1.99
64668091--64668175	23	3.7	23	74	12	77	28	22	17	31	1.97
64668100--64668227	46	2.8	46	83	10	163	28	21	15	35	1.94
64668134--64668221	22	3.9	22	83	4	86	28	21	15	34	1.94
64668157--64668221	22	2.9	22	88	4	94	29	20	15	35	1.93
64675764--64675795	13	2.5	13	94	0	55	34	15	12	37	1.85
64675971--64676079	33	3.3	33	82	6	132	33	24	10	32	1.89
64677762--64677857	29	3.2	29	64	21	70	39	9	22	28	1.85
64677752--64677868	62	1.9	62	98	0	225	39	8	22	29	1.84
64682955--64683071	62	1.9	61	81	5	139	47	4	5	41	1.47
64685874--64685917	21	2.1	21	87	4	63	61	2	0	36	1.09
64686020--64686109	29	3.1	29	76	13	94	62	2	4	31	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64686080--64686119	21	2.0	20	85	5	53	57	5	7	30	1.48
64686913--64686968	21	2.7	21	85	0	67	39	3	26	30	1.73
64695388--64696041	176	3.7	175	83	2	668	27	24	18	28	1.98
64695806--64695905	44	2.2	45	87	1	139	29	22	23	26	1.99
64696219--64696410	64	3.0	64	92	0	312	38	13	17	31	1.88
64697550--64697595	10	4.7	10	79	15	60	10	0	6	82	0.83
64697548--64697595	14	3.3	15	81	18	66	10	0	6	83	0.81
64703220--64703251	6	5.3	6	96	0	55	81	3	0	15	0.82
64705091--64705275	79	2.3	82	83	7	229	25	28	22	23	2.00
64705072--64705275	40	5.1	40	81	8	229	25	27	22	24	2.00
64708731--64708794	27	2.4	27	84	2	76	17	28	18	35	1.93
64708951--64709057	43	2.5	43	84	0	151	29	17	28	24	1.97
64709884--64711019	23	49.7	23	75	9	858	37	24	6	31	1.81
64710069--64711003	229	4.1	228	88	3	1181	37	24	6	31	1.82
64714390--64714453	21	3.0	21	73	8	58	37	40	1	20	1.62
64714421--64714468	15	3.3	15	85	2	62	43	37	0	18	1.51
64714424--64714497	22	3.4	21	74	5	67	45	29	1	22	1.61
64714758--64714807	15	3.4	15	91	2	75	42	36	2	20	1.63
64715213--64715246	17	2.0	17	94	0	59	38	11	20	29	1.88
64715306--64715413	40	2.7	39	80	10	114	30	19	24	25	1.98
64715461--64715608	40	3.7	40	84	4	167	30	17	24	27	1.97
64715230--64715569	155	2.2	155	91	0	536	33	18	20	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64715499--64715608	40	2.8	39	91	4	175	28	18	25	28	1.98
64715306--64715759	195	2.3	193	86	4	623	31	20	20	27	1.97
64715670--64715800	39	3.3	38	79	10	120	28	23	21	26	1.99
64720150--64720174	13	1.9	13	100	0	50	48	16	0	36	1.46
64725763--64725921	74	2.1	74	94	0	273	29	13	19	37	1.90
64725761--64725893	37	3.6	37	74	18	123	29	13	20	36	1.91
64725800--64725918	37	3.2	37	73	13	127	27	13	21	37	1.91
64729775--64729996	47	4.7	49	87	5	321	33	7	29	28	1.85
64729775--64729996	96	2.3	96	93	1	385	33	7	29	28	1.85
64730115--64730259	37	3.9	37	89	0	209	23	20	31	25	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253