genome.fa.s4.2.7.7.80.10.50.1000.198.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  198  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65024917--65025227	45	7.0	45	76	3	270	34	26	14	24	1.94
65024871--65025210	89	3.8	88	75	3	268	34	26	15	23	1.94
65024873--65025232	134	2.7	134	90	0	560	34	26	14	23	1.94
65025853--65025903	20	2.7	18	82	14	59	37	21	0	41	1.54
65028024--65028052	14	2.0	15	93	6	51	82	6	10	0	0.83
65030928--65031024	40	2.3	40	81	10	97	29	26	15	27	1.96
65037095--65037132	19	2.0	19	89	0	58	15	10	0	73	1.09
65044807--65044837	15	2.1	15	100	0	62	19	19	19	41	1.90
65048922--65049037	50	2.3	50	93	0	196	25	10	18	45	1.81
65051883--65052058	46	3.8	46	80	10	214	21	21	28	28	1.98
65051880--65052051	93	1.8	93	94	0	308	21	21	29	27	1.99
65059471--65059646	46	3.8	46	79	12	216	20	21	29	28	1.98
65059468--65059639	93	1.8	93	96	0	317	20	21	29	27	1.98
65069802--65069844	16	2.6	17	85	3	52	44	0	11	44	1.40
65073940--65074317	196	1.9	196	85	4	521	34	11	19	34	1.88
65075359--65075517	43	3.7	44	80	12	177	25	20	24	29	1.99
65081580--65081690	47	2.4	47	80	3	116	19	18	27	35	1.95
65086515--65086736	46	4.8	46	78	8	245	22	20	27	29	1.99
65086511--65086736	93	2.4	95	87	6	313	22	20	27	29	1.99
65088318--65088369	21	2.5	21	87	0	77	40	26	7	25	1.82
65089746--65089841	29	3.3	29	81	7	115	33	30	10	26	1.90
65097179--65097215	17	2.2	17	95	0	65	35	10	2	51	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65097410--65097466	28	2.0	28	100	0	114	40	10	17	31	1.84
65101409--65101482	36	2.1	36	94	0	130	44	1	12	41	1.50
65102762--65102813	26	2.0	26	100	0	104	42	3	15	38	1.65
65109826--65109864	3	13.0	3	100	0	78	33	0	0	66	0.92
65118678--65118895	48	4.4	48	82	4	247	26	18	26	29	1.98
65118678--65118963	143	2.0	145	79	5	317	26	18	26	28	1.98
65126021--65126052	15	2.1	15	94	0	55	15	6	9	68	1.36
65131548--65131744	42	4.7	42	87	1	232	30	24	14	29	1.95
65132620--65132703	31	2.7	31	94	1	143	28	27	16	27	1.97
65132966--65133034	25	2.8	26	89	6	99	24	24	27	23	2.00
65133940--65134176	27	8.7	27	78	3	170	31	9	19	39	1.83
65134027--65134176	81	1.9	81	85	2	212	30	8	20	41	1.81
65134082--65134209	54	2.4	54	80	5	143	28	13	19	38	1.89
65134208--65134405	27	7.3	27	88	0	261	38	6	24	30	1.81
65134208--65134405	81	2.4	81	91	0	306	38	6	24	30	1.81
65139806--65139921	43	2.7	43	84	5	146	25	14	25	34	1.94
65139803--65139942	43	3.3	42	78	6	138	28	14	24	32	1.94
65142055--65142199	40	3.6	40	85	4	184	23	25	24	26	2.00
65143388--65143463	38	2.0	38	100	0	152	31	23	13	31	1.93
65155391--65155570	51	3.6	49	79	16	185	27	17	25	30	1.97
65155392--65155572	50	3.7	49	81	11	167	27	17	24	30	1.97
65155392--65155572	101	1.8	98	83	10	242	27	17	24	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65155663--65155714	25	2.0	26	81	11	61	40	1	21	36	1.64
65162765--65162951	50	3.5	50	74	17	178	24	16	26	32	1.96
65167598--65167774	27	6.6	27	81	5	196	27	15	28	29	1.96
65167599--65167753	81	1.9	81	88	5	233	27	15	28	29	1.96
65167595--65167774	81	2.2	81	83	3	229	27	15	27	29	1.96
65171890--65172020	46	2.8	48	79	12	164	22	19	27	30	1.98
65179673--65179751	41	1.9	41	100	0	158	30	21	18	29	1.97
65182126--65182279	67	2.3	67	77	10	161	32	15	29	22	1.95
65185823--65185853	15	2.1	15	93	0	53	16	6	9	67	1.39
65187842--65188055	43	5.0	43	89	0	311	25	16	27	30	1.97
65189761--65189910	27	5.6	27	80	3	167	32	21	7	39	1.81
65189761--65189910	81	1.9	81	88	2	230	32	21	7	39	1.81
65189973--65190023	27	1.9	26	84	4	66	39	21	9	29	1.85
65189965--65190068	53	2.0	53	80	3	120	40	21	8	29	1.83
65189981--65190102	27	4.6	27	82	6	124	38	22	9	29	1.86
65190150--65190462	27	11.6	27	86	1	387	36	15	20	27	1.93
65190152--65190624	54	9.0	53	81	7	493	35	17	20	26	1.95
65190135--65190642	81	6.4	81	83	6	551	35	17	20	26	1.95
65190467--65190624	27	5.9	27	91	0	253	33	20	22	23	1.97
65190370--65190560	98	2.0	97	88	3	285	34	17	21	26	1.95
65190841--65190920	27	3.0	26	88	3	97	20	22	21	36	1.95
65191011--65191069	22	2.7	22	78	0	55	22	25	20	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65191242--65191307	27	2.5	27	85	7	82	16	22	22	37	1.93
65191443--65191543	6	16.8	6	78	15	102	21	15	11	50	1.76
65191425--65191541	24	4.6	25	75	18	91	21	16	12	49	1.78
65191443--65191543	30	3.4	30	90	5	159	21	15	11	50	1.76
65206744--65206804	30	2.0	30	90	0	95	29	24	6	39	1.80
65218747--65219008	40	6.7	39	84	6	282	25	20	28	25	1.99
65218747--65219006	117	2.2	120	81	6	300	25	20	28	25	1.99
65218748--65219041	79	3.7	80	82	7	228	26	20	28	24	1.99
65226729--65226885	43	3.7	43	76	5	140	31	24	18	26	1.98
65232929--65232957	14	2.0	15	93	6	51	27	0	20	51	1.47
65248554--65248714	40	4.0	40	85	3	207	35	25	14	24	1.93
65259896--65259942	24	2.0	24	91	0	76	36	2	36	25	1.68
65261361--65261472	27	4.2	26	79	7	116	16	21	23	38	1.93
65262809--65262980	43	4.0	43	69	13	129	26	17	23	32	1.96
65268513--65268545	13	2.4	14	90	5	50	63	12	0	24	1.28
65269772--65270063	43	6.9	43	75	12	239	30	25	16	27	1.97
65269776--65270063	127	2.3	127	82	6	386	30	25	16	27	1.97
65273063--65273125	32	2.0	32	93	0	108	26	19	15	38	1.92
65275274--65275368	24	4.0	24	87	0	127	34	2	35	27	1.69
65276762--65276873	27	4.2	26	85	7	143	16	24	23	36	1.94
65276762--65276873	54	2.1	54	89	3	172	16	24	23	36	1.94
65278347--65278385	20	1.9	21	89	5	62	35	15	0	48	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65278557--65278714	43	3.7	42	73	13	144	27	28	18	25	1.98
65292760--65292798	17	2.3	17	95	0	69	7	38	38	15	1.76
65303981--65304116	43	3.2	43	79	7	134	33	24	16	25	1.96
65305920--65306042	44	2.9	41	83	7	156	21	18	26	32	1.97
65305923--65306081	43	3.7	43	82	12	175	23	18	26	32	1.97
65308811--65308986	68	2.6	69	79	12	177	34	15	27	22	1.95
65312259--65312655	43	9.2	43	88	2	564	26	15	27	30	1.96
65314399--65314583	79	2.3	81	84	7	236	23	22	27	26	2.00
65314400--65314583	40	4.6	40	79	10	198	23	22	27	26	2.00
65314452--65314616	79	2.1	79	82	6	192	25	21	26	26	1.99
65320941--65321157	46	4.7	46	88	0	281	40	15	23	20	1.90
65320892--65321147	138	1.9	130	85	6	350	39	15	23	21	1.91
65321418--65321464	25	2.0	25	83	8	62	53	4	14	27	1.60
65325043--65325085	22	2.0	22	86	4	61	53	11	0	34	1.37
65328535--65328646	61	1.9	58	83	5	143	45	9	11	33	1.73
65328616--65328688	36	2.0	36	91	0	119	47	9	9	32	1.68
65328730--65328866	43	3.4	41	80	9	140	43	10	13	32	1.78
65328798--65328870	36	2.0	36	91	0	119	47	9	9	32	1.68
65328872--65328962	45	2.0	45	91	0	146	40	12	14	32	1.83
65329041--65329071	16	1.9	16	93	0	53	54	16	16	12	1.71
65329420--65329472	21	2.5	22	81	9	74	7	13	41	37	1.72
65329576--65329646	35	2.0	36	94	2	126	32	2	47	16	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65333566--65333620	16	3.2	17	82	10	58	58	10	7	23	1.57
65341076--65341121	19	2.4	19	92	3	74	23	15	15	45	1.84
65341199--65341254	24	2.3	24	87	0	76	41	5	5	48	1.49
65341712--65341742	16	1.9	16	93	0	53	61	12	0	25	1.32
65343176--65343218	3	14.3	3	100	0	86	67	0	0	32	0.91
65343267--65343305	20	2.0	20	89	0	60	66	0	2	30	1.05
65347260--65347290	14	2.2	14	100	0	62	51	22	12	12	1.74
65348293--65348317	3	8.3	3	100	0	50	64	0	0	36	0.94
65355211--65355381	93	1.8	93	93	0	297	28	29	20	21	1.98
65355202--65355377	46	3.8	46	79	12	207	28	28	20	21	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253