genome.fa.s4.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  153  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49197593--49197631	19	2.1	19	85	0	51	71	7	5	15	1.26
49198097--49198186	27	3.2	28	75	13	96	33	23	23	20	1.97
49198292--49198356	28	2.3	28	89	0	94	30	10	27	30	1.91
49199414--49199446	12	2.6	13	85	9	50	45	0	45	9	1.35
49205387--49205425	19	2.1	19	85	0	51	71	7	5	15	1.26
49205883--49205952	27	2.5	28	86	4	88	32	24	24	18	1.97
49205883--49205972	28	3.2	28	78	7	94	31	24	24	20	1.98
49206078--49206142	28	2.3	28	94	0	112	30	6	27	35	1.81
49210595--49210628	14	2.5	13	86	9	50	17	2	11	67	1.34
49225720--49225798	37	2.1	37	88	4	115	25	30	18	25	1.98
49225917--49226108	47	4.1	47	90	0	285	27	31	9	31	1.88
49229526--49229708	40	4.6	40	80	6	194	24	26	22	26	2.00
49230015--49230093	29	2.7	29	86	5	106	27	32	15	24	1.95
49230075--49230177	43	2.4	43	100	0	206	26	35	15	22	1.94
49232031--49232109	37	2.1	37	88	4	115	25	30	18	25	1.98
49232228--49232514	47	6.1	47	93	2	468	28	31	9	31	1.88
49235161--49235381	80	2.8	79	88	3	320	26	25	21	26	1.99
49235193--49235377	40	4.6	40	93	1	291	27	27	22	23	1.99
49238057--49238126	25	2.8	25	82	0	86	31	20	20	28	1.97
49239552--49239833	43	6.6	43	87	0	411	25	17	28	28	1.97
49239821--49240165	56	6.2	56	89	0	483	28	14	23	33	1.94
49243271--49243456	41	4.6	41	87	4	243	25	24	26	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49243271--49243478	41	5.2	40	85	1	148	24	24	26	25	2.00
49251223--49251408	41	4.6	40	87	4	248	24	24	26	24	2.00
49254255--49254333	37	2.1	37	88	0	113	25	30	18	25	1.98
49254452--49254668	47	4.6	47	91	0	335	27	31	8	31	1.87
49259391--49259660	40	6.8	40	86	4	368	25	28	21	24	1.99
49259371--49259656	120	2.4	118	94	1	484	26	28	21	23	1.99
49262265--49262378	46	2.5	44	85	7	149	25	29	17	27	1.97
49265134--49265292	43	3.7	43	77	7	146	32	25	16	24	1.96
49265134--49265292	85	1.9	85	81	7	198	32	25	16	24	1.96
49272332--49272575	55	4.6	53	78	8	221	36	17	23	22	1.94
49272339--49272541	108	1.9	110	83	4	268	34	17	24	23	1.96
49277903--49278049	73	2.0	73	100	0	294	49	17	2	29	1.61
49283339--49283505	43	3.9	42	74	11	133	33	23	17	24	1.96
49290567--49290653	43	2.0	43	86	0	120	32	21	29	16	1.95
49301549--49301700	43	3.5	43	79	7	166	30	25	19	25	1.98
49311640--49311966	54	6.1	54	72	4	219	28	17	13	41	1.86
49311644--49311930	107	2.7	108	81	6	307	28	16	13	42	1.86
49311672--49311966	109	2.7	108	81	6	303	29	17	12	40	1.86
49313838--49313876	19	2.1	19	85	0	51	71	7	5	15	1.26
49314340--49314404	27	2.3	28	86	5	87	32	23	24	20	1.98
49314507--49314571	28	2.3	28	92	5	105	29	7	29	33	1.85
49314819--49314850	16	2.1	15	94	5	55	3	18	28	50	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49318807--49318835	14	2.1	14	100	0	58	41	6	20	31	1.79
49327837--49327879	16	2.7	16	81	0	59	51	11	23	13	1.74
49328494--49328588	20	4.7	20	86	1	127	13	23	25	37	1.91
49338061--49338112	27	1.9	27	100	0	104	26	0	38	34	1.57
49338622--49338754	28	4.7	28	75	1	104	27	13	30	27	1.94
49343112--49343263	29	5.3	29	81	5	159	26	14	31	26	1.95
49343112--49343258	57	2.6	58	84	7	169	27	14	31	26	1.95
49359974--49360044	27	2.7	27	78	6	83	39	21	21	18	1.93
49360172--49360368	27	7.3	27	88	1	126	24	22	18	34	1.97
49360173--49360368	54	3.6	54	85	1	259	24	22	18	33	1.97
49360172--49360356	80	2.3	81	83	0	228	24	23	18	32	1.97
49360326--49360377	27	1.9	27	84	0	68	25	17	21	36	1.94
49398449--49398514	27	2.4	27	80	5	80	39	19	18	22	1.92
49398671--49398791	27	4.5	27	79	4	118	23	22	16	37	1.94
49402163--49402210	20	2.4	21	82	10	64	68	6	2	22	1.23
49404856--49404896	22	1.9	21	85	5	55	53	0	2	43	1.13
49404918--49404960	13	3.3	13	81	9	52	48	0	0	51	1.00
49407565--49407604	14	2.9	14	88	3	55	22	5	0	72	1.04
49407550--49407612	6	9.7	6	76	13	54	23	4	0	71	1.05
49407565--49407605	13	3.0	13	86	10	55	21	4	0	73	1.02
49407550--49407612	13	4.8	12	75	14	54	23	4	0	71	1.05
49407597--49407646	19	2.6	20	84	6	68	26	6	2	66	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49408258--49408285	8	3.5	8	100	0	56	10	0	50	39	1.37
49408400--49408461	22	2.9	22	77	13	67	45	24	1	29	1.63
49408610--49408707	21	4.6	21	70	5	63	42	32	1	23	1.61
49408943--49408992	23	2.2	23	78	10	57	18	2	30	50	1.58
49408945--49408992	22	2.1	22	84	3	60	18	2	29	50	1.59
49409032--49409250	41	5.4	41	87	1	264	19	19	23	37	1.94
49409032--49409280	82	3.0	82	82	2	250	19	19	22	38	1.93
49409032--49409280	123	2.0	123	82	3	295	19	19	22	38	1.93
49409305--49409330	12	2.2	12	100	0	52	46	30	15	7	1.74
49410115--49410172	27	2.2	26	87	3	80	34	20	24	20	1.97
49426653--49426705	26	2.0	26	92	0	88	18	15	26	39	1.90
49427535--49427661	63	2.0	63	100	0	254	35	14	14	36	1.86
49437359--49437425	21	3.3	20	71	10	55	70	8	10	10	1.35
49443963--49444023	30	2.0	30	83	0	77	31	22	8	37	1.84
49446222--49446367	40	3.7	40	89	0	204	24	23	28	23	2.00
49454058--49454122	32	2.1	31	83	11	80	66	3	1	29	1.16
49455998--49456185	23	8.1	23	93	0	304	30	21	21	27	1.98
49456232--49456302	20	3.5	20	92	0	115	32	19	11	36	1.87
49456339--49456386	25	1.9	25	86	0	69	25	16	25	33	1.96
49457537--49457613	27	2.9	27	77	11	77	22	20	19	37	1.94
49457718--49457868	81	1.9	81	84	8	209	29	7	19	43	1.80
49457660--49458003	27	12.7	27	78	8	153	33	8	19	38	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49457716--49458002	54	5.3	54	74	9	183	33	8	20	37	1.83
49461141--49461747	47	12.7	47	93	2	973	32	8	29	28	1.87
49461140--49461747	143	4.3	143	92	3	996	33	8	29	28	1.87
49461141--49461747	239	2.5	239	94	2	1062	32	8	29	28	1.87
49465543--49465660	23	5.1	23	94	0	200	29	21	22	27	1.99
49465719--49465775	9	5.9	9	73	15	51	35	21	8	35	1.84
49465707--49465777	20	3.5	20	94	0	124	32	21	11	35	1.89
49465712--49465766	11	5.4	11	70	16	55	30	20	12	36	1.90
49465814--49465886	25	2.9	25	95	0	128	26	15	24	34	1.94
49467140--49467368	27	8.5	26	75	7	138	31	9	17	41	1.81
49467218--49467367	81	1.9	80	81	6	187	29	8	19	43	1.79
49467160--49467529	27	13.7	27	76	9	137	34	8	19	38	1.82
49467359--49467490	54	2.4	54	89	2	194	42	8	19	29	1.80
49467334--49467535	81	2.5	81	75	6	203	37	7	20	34	1.82
49469120--49469254	27	5.0	27	87	0	162	31	22	5	40	1.76
49469120--49469254	54	2.5	54	85	0	180	31	22	5	40	1.76
49469583--49469642	27	2.3	27	85	2	77	23	21	18	36	1.95
49469761--49469832	30	2.4	31	85	4	101	19	19	12	48	1.80
49469761--49469841	6	13.3	6	69	21	53	19	18	13	48	1.81
49471724--49471870	40	3.7	41	88	3	203	24	23	27	24	2.00
49491059--49491186	48	2.7	48	93	0	211	24	17	30	27	1.97
49495123--49495593	47	10.0	47	89	2	611	32	11	29	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49495362--49495436	23	3.2	23	62	23	57	30	13	30	25	1.94
49495572--49495690	46	2.6	46	83	0	148	34	10	31	23	1.89
49495572--49495708	46	3.0	46	78	6	143	34	9	31	24	1.88
49497234--49497564	40	8.3	40	88	0	457	25	19	27	28	1.98
49497234--49497564	80	4.1	80	90	0	520	25	19	27	28	1.98
49501379--49501761	47	8.1	47	90	2	514	31	11	30	26	1.92
49501572--49501649	25	3.2	25	65	23	67	28	10	32	29	1.90
49501735--49501871	46	3.0	46	86	0	193	34	8	31	26	1.85
49502047--49502128	37	2.2	37	84	0	101	21	18	32	26	1.97
49504260--49504440	79	2.3	81	84	7	237	23	22	28	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253