genome.fa.s4.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  154  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49504260--49504442	40	4.6	39	82	9	210	23	22	28	25	1.99
49504292--49504465	79	2.2	78	82	10	210	25	21	27	25	2.00
49511772--49511834	30	2.1	30	88	5	92	26	23	12	36	1.91
49511844--49511935	30	3.1	30	84	1	96	21	20	15	42	1.89
49511886--49511957	30	2.4	30	90	0	108	25	20	11	43	1.85
49511737--49511972	119	2.0	120	84	4	316	23	22	14	39	1.91
49515397--49515464	29	2.3	29	85	5	93	27	30	13	27	1.94
49523097--49523164	29	2.3	29	85	5	93	27	30	13	27	1.94
49523269--49523346	29	2.6	30	82	13	108	26	32	15	25	1.95
49523021--49523341	177	1.8	174	86	3	464	33	23	13	29	1.93
49523324--49523430	42	2.5	42	98	0	205	29	29	12	28	1.93
49536290--49536366	39	2.0	39	89	0	118	22	24	29	23	1.99
49537234--49537341	44	2.5	44	83	8	132	24	19	23	33	1.97
49537244--49537403	85	1.9	84	82	8	198	25	18	24	31	1.98
49537245--49537403	43	3.7	44	76	13	154	25	18	24	31	1.98
49539333--49539505	46	3.7	46	76	10	181	23	19	25	31	1.98
49539330--49539500	93	1.8	93	91	0	279	23	19	26	30	1.98
49541619--49541697	37	2.1	37	90	0	122	25	31	18	24	1.98
49541816--49542431	47	12.9	47	93	2	1034	29	29	8	32	1.87
49552021--49552123	51	2.0	51	94	0	179	38	17	10	33	1.84
49559182--49559280	44	2.3	42	84	8	128	22	18	25	34	1.96
49560435--49560531	30	3.2	30	92	0	167	21	29	30	17	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49561674--49561710	7	5.4	7	96	3	67	75	0	10	13	1.04
49565003--49565116	54	2.1	54	98	0	219	31	8	20	39	1.83
49565458--49565534	29	2.7	29	89	0	118	25	16	29	27	1.97
49565458--49565568	58	1.9	57	85	1	150	28	15	29	26	1.96
49568459--49568489	16	1.9	16	100	0	62	51	22	6	19	1.69
49569953--49570038	28	3.0	28	81	3	100	31	12	27	27	1.93
49569953--49570013	29	2.1	28	84	3	77	31	13	26	29	1.93
49571359--49571531	46	3.7	46	72	13	147	30	23	20	25	1.98
49571364--49571569	93	2.2	93	86	0	295	30	25	18	25	1.98
49582348--49582380	14	2.3	15	89	5	50	24	0	18	57	1.40
49586238--49586279	20	2.1	20	100	0	84	16	19	14	50	1.79
49587209--49587247	19	2.0	20	85	5	53	51	12	2	33	1.54
49598635--49598809	40	4.4	40	93	0	278	22	21	28	28	1.99
49598635--49598833	80	2.5	80	87	0	227	24	22	26	27	2.00
49606402--49606576	40	4.4	40	87	0	251	23	20	27	29	1.99
49606402--49606600	80	2.5	80	84	0	218	24	20	26	28	1.99
49621536--49621732	27	7.3	27	83	3	227	28	22	8	40	1.84
49621536--49621698	81	2.0	81	93	0	281	28	23	7	39	1.83
49621748--49621887	27	5.2	26	81	6	82	40	20	10	29	1.85
49621748--49621886	54	2.6	53	79	4	125	40	20	10	29	1.85
49621764--49621912	81	1.8	81	85	2	210	43	19	7	29	1.78
49621764--49621890	27	4.7	27	82	3	157	41	21	7	29	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49621844--49621912	27	2.6	29	82	13	85	49	20	2	27	1.63
49621764--49621912	54	2.8	54	77	4	158	43	19	7	29	1.78
49621892--49621977	27	3.1	27	78	17	79	41	13	8	36	1.75
49622018--49622091	27	2.7	27	76	12	71	37	20	20	21	1.94
49622031--49622095	27	2.4	27	82	5	78	35	18	24	21	1.96
49622905--49622974	25	2.8	24	86	4	95	24	25	24	25	2.00
49623122--49623213	42	2.2	42	98	0	175	31	15	20	32	1.94
49623237--49623351	31	3.7	31	91	5	182	29	17	25	27	1.97
49626221--49626254	17	1.9	18	88	5	52	23	29	32	14	1.94
49635773--49635823	15	3.5	15	72	20	54	49	1	5	43	1.38
49636661--49636891	26	8.9	26	74	3	169	18	16	27	38	1.92
49636661--49636848	52	3.6	52	81	1	198	18	17	26	37	1.93
49639077--49639101	9	2.8	9	100	0	50	12	36	24	28	1.91
49639086--49639170	28	3.0	28	83	6	91	25	31	15	27	1.95
49639211--49639290	40	2.0	40	90	0	124	26	28	20	25	1.99
49652031--49652056	9	2.9	9	100	0	52	34	23	19	23	1.96
49657069--49657262	40	4.9	40	94	0	336	26	23	28	22	1.99
49658708--49658763	17	3.3	17	97	0	103	16	26	39	17	1.91
49658686--49658814	29	4.3	29	78	10	125	17	29	36	16	1.92
49660675--49660877	40	5.1	40	88	2	275	22	23	28	26	1.99
49664883--49664938	18	3.1	18	84	5	69	28	19	1	50	1.58
49668694--49668748	29	1.9	28	85	10	76	18	29	12	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49673775--49673832	23	2.5	23	85	0	80	44	13	18	22	1.85
49678227--49678259	13	2.6	13	90	4	50	39	0	12	48	1.40
49683084--49683132	24	2.0	24	96	0	89	6	22	28	42	1.77
49683633--49683709	40	1.9	40	97	0	145	33	28	27	10	1.90
49706802--49706871	21	3.2	21	68	18	61	22	10	25	41	1.85
49710638--49711011	47	8.0	47	87	1	525	32	11	29	26	1.92
49710901--49710975	23	3.1	25	63	24	61	29	13	33	24	1.93
49711174--49711325	37	4.1	37	92	0	232	21	21	32	25	1.98
49712414--49712485	37	1.9	37	91	0	117	27	29	19	23	1.98
49712694--49713035	47	7.1	47	87	3	414	26	29	12	31	1.93
49712694--49713013	151	2.2	145	88	5	459	26	29	12	31	1.93
49715216--49715392	84	2.1	84	95	3	329	26	27	8	37	1.85
49717160--49717786	40	15.8	40	90	2	960	26	28	21	23	1.99
49717160--49717786	198	3.2	198	91	2	999	26	28	21	23	1.99
49719033--49719106	36	2.0	37	89	2	114	28	31	17	22	1.97
49719318--49719751	47	9.1	47	88	6	620	26	30	12	30	1.93
49719318--49719751	147	3.0	142	88	5	642	26	30	12	30	1.93
49721931--49722109	85	2.1	85	98	0	349	26	27	8	37	1.85
49730170--49730257	45	2.0	45	88	0	131	25	10	23	40	1.86
49738624--49738690	27	2.6	26	83	6	91	35	20	19	23	1.95
49738640--49738704	27	2.4	27	94	0	112	40	16	21	21	1.92
49738705--49738850	27	5.4	27	87	0	220	24	19	19	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49743049--49743290	40	6.1	40	89	1	337	23	22	26	26	2.00
49747936--49747989	27	2.0	27	85	3	74	35	20	22	22	1.96
49747990--49748296	27	11.4	27	85	3	377	25	20	18	35	1.95
49747990--49748296	81	3.8	81	87	0	416	25	20	18	35	1.95
49750509--49750718	56	3.7	55	80	3	213	32	22	14	30	1.93
49756355--49756506	56	2.7	56	86	0	196	31	26	14	27	1.95
49758549--49758800	40	6.3	40	89	3	330	23	19	27	28	1.98
49767000--49767251	40	6.3	40	89	3	330	23	19	27	28	1.98
49783281--49783444	41	3.9	42	79	6	170	32	14	23	29	1.94
49792897--49792943	20	2.2	22	85	7	62	65	4	21	8	1.37
49799409--49799543	51	2.7	50	80	3	173	29	25	18	25	1.98
49804754--49805044	47	6.1	47	76	9	220	33	9	28	28	1.89
49804824--49805099	50	5.7	49	80	6	289	34	9	27	28	1.88
49804926--49805001	23	3.2	25	62	24	63	28	13	34	23	1.92
49804777--49805086	143	2.2	144	87	2	435	34	10	27	28	1.89
49804772--49805123	50	7.3	50	73	15	224	33	9	27	28	1.89
49804777--49805140	143	2.5	142	82	7	353	33	10	27	28	1.90
49805249--49805393	37	3.9	37	93	0	236	22	20	32	24	1.98
49806345--49806405	30	2.0	30	83	0	77	31	22	8	37	1.84
49814989--49815175	50	3.8	49	80	7	189	25	18	27	28	1.98
49821167--49821236	25	2.8	25	86	0	104	50	12	18	18	1.78
49821155--49821295	62	2.3	62	88	0	201	48	12	18	20	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49821228--49821292	25	2.6	25	92	0	103	44	12	20	23	1.84
49821191--49821273	37	2.2	37	86	0	112	45	13	18	22	1.84
49821412--49821492	27	3.0	27	78	8	76	37	23	23	16	1.94
49821581--49821641	22	2.8	22	80	9	79	34	24	22	18	1.96
49822159--49822296	27	5.1	27	83	4	163	27	21	15	34	1.94
49822159--49822289	54	2.4	54	85	1	192	25	22	16	34	1.95
49822334--49822539	27	7.7	26	78	8	171	26	9	23	40	1.84
49822316--49822539	54	4.1	54	77	2	189	27	9	22	40	1.85
49822327--49822539	81	2.6	81	80	4	198	27	9	23	39	1.85
49833081--49833211	47	2.8	46	90	3	199	19	21	29	30	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253