genome.fa.s4.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  119  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37462228--37462331	43	2.4	44	76	12	110	30	23	18	27	1.97
37472952--37472991	14	2.9	13	88	3	53	17	2	2	77	0.99
37481373--37481531	43	3.7	42	75	8	117	33	23	16	26	1.96
37486125--37486594	47	9.8	49	92	5	705	32	8	29	29	1.87
37490677--37490747	35	2.0	35	94	0	124	45	19	4	30	1.70
37497067--37497120	5	10.8	5	76	7	56	74	3	1	20	1.07
37508546--37508594	21	2.3	22	80	16	59	59	2	30	8	1.38
37512229--37512283	27	2.1	27	86	3	76	14	14	21	49	1.79
37512562--37512648	29	3.0	29	88	1	122	29	28	12	28	1.93
37512711--37512748	17	2.2	17	100	0	76	26	42	21	10	1.85
37519437--37519530	48	2.0	48	93	0	161	26	27	21	24	1.99
37522605--37522664	30	2.0	30	90	0	93	31	25	6	36	1.82
37527186--37527221	14	2.5	15	90	9	65	63	8	22	5	1.43
37527876--37528015	39	3.6	39	91	0	208	26	27	21	25	1.99
37529684--37529748	31	2.1	32	91	5	107	29	26	15	29	1.96
37529995--37530064	25	2.8	25	86	0	104	28	22	22	25	1.99
37530112--37530159	20	2.3	21	92	3	80	35	18	10	35	1.85
37537031--37537093	31	2.0	31	87	0	90	26	23	12	36	1.91
37537278--37537431	25	6.2	25	89	6	208	26	24	19	29	1.98
37537482--37537528	20	2.3	20	96	0	85	34	21	10	34	1.88
37540644--37540708	31	2.1	32	85	5	89	32	26	12	29	1.92
37540954--37541023	25	2.8	25	82	0	95	25	25	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37541071--37541119	20	2.4	21	89	3	73	38	18	8	34	1.80
37541071--37541119	11	4.7	11	75	14	50	38	18	8	34	1.80
37548598--37548720	22	5.3	22	65	24	74	33	13	28	25	1.93
37548577--37548810	94	2.5	94	90	2	328	33	11	29	25	1.92
37548577--37548770	47	4.1	47	97	0	352	34	11	28	25	1.91
37548794--37548966	46	3.8	46	94	0	283	35	9	31	23	1.87
37561590--37561628	20	2.0	20	100	0	78	35	12	20	30	1.90
37561679--37561825	24	6.2	23	87	3	204	29	21	21	27	1.98
37561679--37561825	47	3.1	47	86	2	206	29	21	21	27	1.98
37561679--37561825	71	2.1	71	92	0	240	29	21	21	27	1.98
37562038--37562101	31	2.1	31	90	0	101	35	15	23	25	1.94
37564249--37564327	29	2.7	29	86	2	104	29	32	15	22	1.95
37574091--37574242	37	4.1	37	91	3	234	25	32	20	21	1.97
37574405--37574778	47	8.0	47	88	0	541	27	29	10	32	1.91
37574557--37574637	25	3.4	25	68	16	71	32	28	7	32	1.85
37574680--37574753	23	3.2	22	67	27	55	25	32	12	29	1.92
37579537--37579634	27	3.5	28	87	6	128	27	15	27	29	1.96
37588186--37588278	11	7.8	12	74	11	57	13	9	4	72	1.26
37588194--37588234	11	3.7	11	100	0	82	14	0	7	78	0.96
37593473--37593571	28	3.5	29	86	9	125	27	15	28	29	1.96
37594817--37594841	11	2.3	11	100	0	50	56	20	0	24	1.43
37595796--37596069	96	2.9	96	81	3	318	22	29	20	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37595794--37596066	144	1.9	144	82	7	340	21	28	20	28	1.98
37595796--37596066	48	5.6	48	77	5	269	22	29	19	28	1.98
37603813--37603844	14	2.3	14	94	0	55	68	0	0	31	0.90
37603796--37603873	24	3.2	23	70	13	66	60	0	1	38	1.05
37604430--37604501	36	2.0	36	86	5	101	29	2	4	63	1.27
37606569--37606609	19	2.2	19	95	0	73	7	24	4	63	1.40
37612524--37614082	780	2.0	780	93	0	2643	28	8	23	40	1.83
37621181--37621300	48	2.5	48	81	2	136	26	22	15	35	1.93
37649935--37649969	6	5.8	6	100	0	70	82	0	0	17	0.66
37653050--37653242	43	4.6	42	88	3	158	22	29	20	26	1.99
37653078--37653242	85	1.9	85	90	2	260	22	30	21	26	1.99
37653078--37653242	43	3.9	43	91	1	262	22	30	21	26	1.99
37666807--37666848	22	1.9	22	85	0	57	7	23	2	66	1.28
37668091--37668202	27	4.1	27	83	7	129	16	23	23	37	1.93
37668091--37668202	54	2.1	54	86	3	154	16	23	23	37	1.93
37677535--37677710	40	4.4	40	88	2	248	26	27	21	24	1.99
37682696--37682832	40	3.5	40	83	8	140	25	29	22	22	1.99
37703754--37703786	11	3.1	11	95	4	59	30	27	15	27	1.96
37712735--37713335	298	2.0	299	98	0	1159	26	25	20	27	1.99
37720980--37721142	46	3.5	45	75	11	177	30	28	19	22	1.97
37720986--37721155	93	1.8	93	92	2	288	30	28	19	22	1.98
37723637--37723714	34	2.3	34	82	8	97	30	21	19	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37725823--37726047	40	5.7	40	84	7	280	24	22	27	25	2.00
37728478--37728511	18	1.9	18	88	5	52	29	38	0	32	1.58
37734066--37734177	27	4.2	26	82	7	116	39	22	22	16	1.92
37740523--37740616	27	3.6	27	78	12	97	40	21	21	17	1.91
37740523--37740623	26	3.8	27	79	10	109	38	20	22	17	1.93
37750724--37750941	40	5.5	40	88	1	305	22	22	27	26	1.99
37758948--37759165	40	5.5	40	90	1	323	22	22	28	26	1.99
37762682--37762709	13	2.2	13	100	0	56	50	28	0	21	1.49
37773162--37773209	24	2.0	24	100	0	96	25	12	20	41	1.87
37777083--37777192	54	2.0	54	94	0	193	33	11	26	28	1.91
37778704--37778860	43	3.6	44	83	7	205	24	17	26	32	1.96
37791929--37792037	37	2.9	37	95	0	191	26	31	19	22	1.98
37792178--37792464	48	5.9	48	95	1	493	31	27	6	34	1.82
37792163--37792469	146	2.1	147	89	4	494	31	28	5	33	1.81
37792178--37792464	98	3.0	96	93	2	502	31	27	6	34	1.82
37792481--37792674	47	4.1	47	89	0	271	25	27	9	37	1.87
37792527--37792601	22	3.3	22	68	23	64	26	29	12	32	1.92
37792442--37792674	94	2.5	95	83	4	276	25	28	9	36	1.87
37792502--37792580	25	3.3	25	68	22	78	29	26	8	35	1.87
37796502--37796630	46	2.8	47	86	2	179	23	15	27	33	1.95
37808224--37808343	43	2.8	42	74	8	109	27	21	24	26	1.99
37808536--37808580	22	2.0	22	100	0	90	40	4	26	28	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37808531--37808583	22	2.3	24	83	12	83	39	3	26	30	1.74
37808541--37808588	22	2.2	22	92	0	78	45	6	20	27	1.75
37810328--37810363	19	1.9	18	94	5	63	77	2	19	0	0.88
37826332--37826686	49	7.5	47	72	12	167	25	26	18	28	1.98
37826525--37826686	46	3.5	46	78	6	166	24	25	18	31	1.97
37830418--37830509	29	3.2	29	76	1	96	27	14	30	28	1.95
37840508--37840678	93	1.8	93	94	0	306	27	29	21	21	1.98
37840500--37840675	46	3.8	46	81	10	214	28	29	21	21	1.98
37843040--37843122	28	2.9	28	82	10	96	56	15	16	10	1.66
37843036--37843113	15	5.4	15	77	13	83	58	12	17	10	1.61
37843047--37843122	15	5.2	15	75	12	77	56	14	17	11	1.67
37846043--37846213	93	1.8	93	96	0	315	27	30	21	20	1.98
37846035--37846210	46	3.8	46	80	10	223	28	30	21	20	1.98
37850554--37850764	46	4.6	46	81	7	241	27	19	30	23	1.98
37851156--37851212	27	2.1	27	100	0	114	38	14	17	29	1.89
37856168--37856214	19	2.5	20	86	10	64	21	17	8	53	1.70
37856170--37856214	20	2.4	19	85	10	58	22	17	6	53	1.67
37861471--37861610	60	2.3	59	91	2	217	25	13	26	35	1.93
37862650--37862734	43	2.0	43	95	0	152	43	12	8	35	1.73
37864203--37864411	78	2.6	79	84	2	294	29	28	22	19	1.98
37864217--37864440	39	5.7	40	85	4	240	26	26	24	22	2.00
37866879--37866993	55	2.1	55	80	0	122	18	26	36	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37868342--37868564	104	2.2	103	93	2	376	17	19	31	31	1.95
37868594--37868645	26	2.0	26	92	0	86	15	21	34	28	1.94
37868483--37868633	72	2.1	72	91	2	243	23	16	29	30	1.96
37875969--37876019	26	2.0	26	96	0	93	11	23	35	29	1.90
37875892--37876112	103	2.2	102	93	2	372	18	18	31	31	1.95
37876032--37876182	71	2.1	72	91	2	243	23	16	29	30	1.96
37878584--37878621	19	2.0	19	85	10	51	34	0	0	65	0.93
37878556--37878619	10	6.0	11	72	16	55	31	0	0	68	0.90
37878592--37878633	18	2.3	19	84	8	52	33	0	2	64	1.07
37881916--37882458	238	2.3	235	82	7	627	37	11	7	44	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253