genome.fa.s4.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  116  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36419284--36419665	40	9.6	40	83	4	348	24	21	27	26	1.99
36422512--36422828	47	6.7	47	92	0	501	32	8	29	28	1.87
36422947--36423025	37	2.1	37	90	0	122	24	18	31	25	1.98
36425505--36425567	27	2.3	27	97	0	117	19	30	22	28	1.98
36427393--36427514	44	2.6	46	83	6	149	27	31	18	22	1.97
36428260--36428310	20	2.7	18	82	14	59	37	21	0	41	1.54
36437684--36437729	20	2.3	20	82	14	60	28	28	17	26	1.98
36437696--36437739	19	2.2	20	84	4	54	34	25	18	22	1.96
36438365--36438395	16	2.0	15	93	6	53	9	19	19	51	1.74
36441312--36441477	43	3.9	43	83	1	181	24	15	27	32	1.95
36441408--36441504	43	2.3	43	81	0	113	26	18	24	29	1.98
36441866--36441892	13	2.1	13	100	0	54	14	33	37	14	1.88
36454501--36454747	40	6.2	40	92	3	394	25	27	23	23	2.00
36455932--36455958	14	1.9	14	100	0	54	0	22	0	77	0.76
36455884--36456005	53	2.3	53	90	5	192	15	22	10	51	1.74
36463660--36463833	46	3.8	45	76	15	194	20	20	29	29	1.98
36470978--36471160	40	4.6	40	82	9	207	25	27	22	24	2.00
36470978--36471161	79	2.3	81	84	6	225	25	27	22	24	2.00
36478893--36479074	40	4.6	39	81	9	208	25	28	21	24	1.99
36478893--36479075	39	4.6	39	84	5	226	26	27	21	24	1.99
36478893--36479075	79	2.3	80	84	5	230	26	27	21	24	1.99
36482297--36482471	46	3.8	46	78	15	200	20	20	29	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36482294--36482464	93	1.8	92	93	3	299	21	21	29	28	1.98
36483814--36483958	40	3.6	40	95	0	263	26	27	22	23	2.00
36485093--36485215	53	2.3	54	92	2	203	15	21	10	52	1.72
36488263--36488651	46	8.5	45	72	11	290	24	28	19	28	1.98
36488304--36488651	91	3.8	91	83	1	430	24	27	20	27	1.99
36488577--36488666	46	2.0	46	82	8	112	30	25	18	25	1.98
36500432--36500608	48	3.7	48	79	7	162	27	25	17	28	1.98
36503801--36503838	19	2.0	19	85	10	51	18	10	0	71	1.14
36508971--36509468	246	2.0	248	94	0	883	32	11	22	33	1.90
36510186--36510335	67	2.2	67	81	9	171	32	17	29	21	1.96
36514813--36515113	120	2.5	119	90	4	473	25	22	26	25	2.00
36514813--36515080	40	6.7	40	92	2	441	24	22	26	25	2.00
36526827--36527113	40	7.2	40	90	2	429	24	22	27	26	2.00
36536459--36536642	40	4.6	40	74	10	162	27	27	20	24	1.99
36541651--36541922	40	6.8	40	86	1	350	23	21	29	25	1.99
36541655--36541942	120	2.4	120	92	0	470	23	21	29	26	1.99
36546083--36546350	48	5.6	48	82	0	284	26	29	17	25	1.98
36546084--36546350	144	1.9	144	80	3	322	26	29	17	25	1.98
36555777--36555953	38	4.7	38	89	0	246	22	20	24	32	1.98
36560262--36560364	27	3.8	27	84	5	127	37	20	17	24	1.93
36560273--36560375	27	3.8	28	86	7	126	39	21	17	21	1.92
36560722--36560778	18	3.2	18	82	2	71	22	17	17	42	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36563760--36563875	27	4.3	26	81	6	115	42	18	18	20	1.90
36563760--36563875	54	2.1	54	81	9	139	42	18	18	20	1.90
36567317--36567399	27	3.1	27	82	6	80	36	19	16	27	1.93
36567354--36567452	27	3.7	27	77	0	108	38	21	20	20	1.94
36567786--36567841	18	3.1	18	75	10	60	23	21	16	39	1.92
36570649--36570737	28	3.2	27	75	3	88	26	14	26	31	1.95
36570635--36570760	55	2.3	57	86	4	168	28	12	26	32	1.93
36570633--36570716	28	3.0	28	77	1	98	25	11	27	35	1.91
36572183--36572247	30	2.2	30	91	0	103	16	27	29	26	1.97
36575151--36575273	22	5.3	22	62	27	58	32	13	29	25	1.93
36575135--36575319	47	3.9	47	91	0	289	33	11	28	26	1.92
36575524--36575710	37	5.1	37	94	0	311	24	18	30	26	1.98
36584660--36584753	42	2.3	42	88	1	136	30	22	14	31	1.94
36584654--36584767	42	2.7	41	78	9	131	31	24	14	29	1.94
36586353--36586454	43	2.4	43	83	3	125	28	24	17	29	1.97
36594957--36594995	17	2.2	17	86	4	51	79	0	20	0	0.73
36596251--36596532	40	7.1	40	92	1	433	22	22	28	26	1.99
36600665--36600884	40	5.7	40	84	9	269	25	28	22	24	1.99
36608546--36608770	79	2.8	78	81	10	267	24	26	22	26	2.00
36608546--36608770	119	1.9	120	82	9	291	24	26	22	26	2.00
36608546--36608770	40	5.7	39	84	8	244	24	26	22	26	2.00
36615417--36615617	40	5.0	40	89	2	280	22	22	29	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36624476--36624676	108	1.8	110	89	4	318	34	17	24	23	1.96
36628019--36628128	28	3.9	28	87	0	148	32	30	11	25	1.92
36628135--36628211	40	1.9	40	81	0	91	28	29	18	23	1.97
36632686--36632978	146	2.0	146	100	0	586	24	19	19	36	1.95
36635051--36635106	28	2.0	28	92	0	94	25	26	21	26	1.99
36639236--36639411	46	3.8	46	73	7	176	22	18	28	30	1.97
36639235--36639403	93	1.8	93	88	2	259	22	18	28	30	1.98
36643928--36644101	46	3.8	46	75	6	172	21	20	28	29	1.98
36652743--36652804	31	2.0	31	100	0	124	19	3	22	54	1.58
36662310--36662460	43	3.5	44	83	6	202	28	15	23	31	1.96
36664482--36664638	43	3.7	43	78	6	158	33	28	16	21	1.95
36673764--36673951	27	7.0	27	79	5	166	38	21	10	29	1.86
36673765--36673934	54	3.2	54	83	4	184	38	22	9	29	1.85
36673756--36673976	81	2.7	82	80	6	236	39	21	9	29	1.85
36673943--36674003	27	2.3	27	88	0	86	39	22	4	32	1.76
36673756--36673976	54	4.1	53	75	7	160	39	21	9	29	1.85
36674006--36674329	27	12.0	27	86	0	405	36	18	20	24	1.95
36674006--36674325	81	4.0	81	90	0	462	36	17	20	24	1.94
36674554--36674633	27	3.0	27	88	3	108	22	21	20	36	1.95
36674848--36674929	27	3.1	27	79	8	87	20	23	19	36	1.95
36681839--36682149	48	6.5	50	75	7	220	28	28	16	26	1.97
36681875--36682160	96	3.0	96	79	4	274	29	28	16	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36681839--36682149	142	2.2	141	83	5	367	28	28	16	26	1.97
36690454--36690637	40	4.6	40	85	6	239	25	27	22	24	2.00
36698571--36698754	40	4.6	40	85	4	237	25	27	22	24	2.00
36698535--36698754	80	2.8	79	84	4	257	26	26	22	24	2.00
36701064--36701330	48	5.5	50	83	7	263	26	27	18	27	1.98
36701100--36701339	48	5.0	48	87	3	315	27	27	18	26	1.98
36715321--36715504	40	4.7	40	83	9	234	25	27	22	23	2.00
36723105--36723288	78	2.3	81	80	9	218	26	27	22	24	2.00
36723105--36723288	40	4.7	40	80	9	216	26	27	22	24	2.00
36737427--36737598	93	1.8	93	93	2	301	28	29	20	21	1.98
36737420--36737595	46	3.8	47	79	12	211	29	28	20	21	1.98
36751826--36751898	29	2.6	29	89	6	105	32	26	12	28	1.92
36759186--36759358	93	1.9	93	93	0	301	27	31	21	19	1.97
36759178--36759354	46	3.8	45	80	12	198	28	30	20	19	1.97
36759230--36759373	46	3.1	46	72	11	132	29	29	20	20	1.97
36761735--36761823	30	3.0	30	80	8	101	57	15	16	10	1.65
36761735--36761814	15	5.4	15	80	7	92	58	13	17	10	1.62
36761746--36761823	15	5.2	15	78	9	79	56	15	16	11	1.67
36764746--36764917	93	1.8	93	94	0	308	27	30	21	20	1.98
36764738--36764913	46	3.8	46	80	12	216	28	29	21	20	1.98
36767286--36767358	15	5.0	15	77	11	80	54	15	17	12	1.70
36771330--36771499	40	4.2	40	84	3	225	23	20	29	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36771334--36771519	80	2.3	80	91	2	304	23	19	29	27	1.98
36779453--36779723	40	6.8	40	85	2	350	25	21	28	25	1.99
36779457--36779743	80	3.6	80	88	2	400	24	20	28	26	1.99
36784332--36784402	29	2.5	29	88	6	101	32	26	12	28	1.93
36801408--36801533	46	2.7	48	79	10	145	26	18	30	25	1.98
36810204--36810279	29	2.6	30	80	12	70	25	30	15	28	1.96
36810361--36810397	19	1.9	19	88	0	56	16	37	18	27	1.92
36813527--36813560	18	1.9	18	88	5	52	32	14	14	38	1.87
36814297--36814374	40	2.0	40	92	0	129	15	21	20	42	1.89
36814976--36815021	24	1.9	24	86	0	65	15	17	10	56	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253