genome.fa.s4.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  117  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36816238--36816270	16	2.1	16	94	0	57	21	6	24	48	1.72
36819143--36819261	29	4.2	30	78	8	115	27	30	13	28	1.94
36819145--36819257	58	2.0	57	85	1	154	26	30	14	28	1.95
36820736--36820766	16	1.9	16	93	0	53	16	6	25	51	1.68
36825114--36825192	37	2.1	37	90	0	122	25	31	18	24	1.98
36825311--36825865	47	11.7	47	92	1	869	28	29	8	32	1.87
36825641--36825724	8	10.0	9	67	14	54	34	25	1	39	1.64
36825641--36825724	25	3.4	25	94	0	150	34	25	1	39	1.64
36828791--36828831	18	2.3	19	83	12	59	21	43	21	12	1.85
36832459--36832488	13	2.3	13	94	0	51	80	6	3	10	1.01
36835975--36836053	6	13.2	6	72	24	60	50	1	3	44	1.28
36835980--36836069	11	7.5	11	70	22	65	52	1	3	43	1.25
36841789--36841904	39	3.0	38	91	2	160	26	27	19	25	1.99
36849964--36850114	39	3.9	39	94	0	257	27	26	21	25	1.99
36852572--36852676	31	3.4	31	97	0	192	28	27	18	25	1.98
36852894--36852964	25	2.8	25	93	2	115	26	23	23	25	2.00
36853855--36854191	27	12.4	27	76	9	159	32	9	18	39	1.83
36853832--36853988	56	2.9	53	77	9	145	32	7	19	40	1.79
36853942--36854140	80	2.5	79	83	5	240	29	9	20	40	1.84
36853855--36854272	54	7.7	54	76	9	181	34	9	19	37	1.83
36854116--36854292	27	6.6	27	83	2	203	40	9	18	31	1.82
36854132--36854322	81	2.3	80	77	7	213	38	8	21	31	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36854144--36854299	27	5.8	27	85	3	215	41	8	21	29	1.82
36854116--36854292	54	3.3	54	88	3	248	40	9	18	31	1.82
36874795--36874904	49	2.2	49	82	6	125	24	26	18	30	1.98
36874827--36875001	46	3.7	46	80	8	174	21	29	20	29	1.98
36882287--36882460	93	1.8	96	82	7	230	28	27	18	25	1.98
36882290--36882460	44	3.7	44	75	10	146	28	26	18	26	1.98
36901517--36901651	54	2.5	53	96	2	243	30	25	17	25	1.97
36902497--36902528	16	2.0	16	100	0	64	25	12	18	43	1.85
36907405--36907457	27	2.0	27	100	0	106	22	3	20	52	1.62
36912066--36912105	20	2.0	20	85	9	55	45	0	0	55	0.99
36917090--36917265	50	3.5	49	82	6	183	28	26	17	27	1.98
36919274--36919343	28	2.5	28	90	4	106	32	27	12	27	1.93
36926120--36926144	13	1.9	13	100	0	50	8	40	36	16	1.77
36937400--36937424	9	2.8	9	100	0	50	52	0	24	24	1.48
36939211--36939248	19	2.0	19	85	10	51	68	0	10	21	1.19
36942105--36942129	9	2.8	9	100	0	50	24	0	20	56	1.43
36950152--36950436	143	2.0	142	97	0	543	40	17	18	22	1.91
36952595--36952779	47	3.9	46	83	4	208	32	11	29	25	1.92
36952752--36952977	48	4.8	48	85	11	333	35	6	26	30	1.82
36952817--36952897	41	2.0	41	100	0	162	35	4	27	32	1.78
36952769--36952947	89	2.0	91	92	4	301	36	5	26	31	1.80
36952858--36952974	50	2.4	50	87	8	177	36	6	25	30	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36952858--36952998	50	2.8	50	78	15	166	33	7	28	31	1.84
36953123--36953194	37	1.9	37	91	0	117	22	18	30	29	1.97
36954462--36954661	40	5.0	40	94	2	348	25	22	28	25	1.99
36954611--36954713	51	2.0	51	90	0	161	22	20	29	28	1.98
36954680--36954756	40	1.9	40	91	0	127	22	22	29	25	1.99
36954571--36954753	91	2.0	91	88	0	267	22	21	29	26	1.99
36958778--36958971	47	4.1	47	89	0	280	32	11	28	26	1.91
36958807--36958878	22	3.1	22	64	24	58	33	15	27	23	1.95
36958852--36958927	23	3.2	25	62	24	63	28	13	34	23	1.92
36958941--36959173	48	4.8	48	93	3	387	36	6	26	30	1.83
36958941--36959192	98	2.6	95	87	5	339	34	7	26	31	1.84
36964885--36964968	12	6.9	12	75	17	57	17	3	3	75	1.10
36964885--36964941	19	2.9	19	82	10	62	21	1	3	73	1.07
36964902--36964952	19	2.7	19	84	3	59	17	3	3	74	1.12
36964928--36964965	11	3.3	12	85	10	53	7	7	5	78	1.07
36964923--36964965	23	1.9	22	85	4	59	11	6	4	76	1.13
36964901--36964971	20	3.5	18	70	22	52	15	4	4	76	1.10
36965018--36965063	12	3.9	12	85	5	58	23	6	4	65	1.35
36965104--36965181	6	12.5	6	80	12	68	16	3	5	74	1.15
36965104--36965131	13	2.2	13	100	0	56	14	0	0	85	0.59
36965111--36965181	27	2.5	27	86	11	90	16	4	5	73	1.19
36967231--36967423	29	6.7	29	78	5	185	25	15	22	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36967231--36967423	87	2.2	87	81	3	219	25	15	22	36	1.94
36968088--36968137	21	2.4	21	89	0	73	20	32	32	16	1.94
36974263--36974307	20	2.3	19	81	11	54	35	15	2	46	1.58
36984731--36984800	22	3.1	22	71	15	63	37	20	18	24	1.94
36992563--36992604	20	2.1	20	90	0	66	35	16	2	45	1.61
36992949--36993018	35	2.0	35	94	0	122	40	14	11	34	1.82
36999441--36999485	18	2.4	19	85	14	58	15	8	4	71	1.28
36999421--36999486	19	3.4	20	76	14	66	18	10	4	66	1.38
37003030--37003099	26	2.7	26	80	8	79	18	18	20	42	1.89
37003191--37003258	29	2.3	29	76	20	79	27	11	20	39	1.88
37005693--37005762	27	2.6	26	95	2	95	31	28	12	27	1.93
37005693--37005790	28	3.5	28	90	2	135	31	28	13	26	1.94
37006239--37006265	12	2.2	12	100	0	54	40	0	7	51	1.30
37013638--37013707	27	2.6	26	95	2	95	31	28	12	27	1.93
37013638--37013735	28	3.5	28	90	2	135	31	28	13	26	1.94
37019501--37019538	17	2.2	17	86	9	51	34	2	0	63	1.09
37023463--37023681	47	4.7	47	73	7	180	27	21	29	21	1.98
37027867--37028051	40	4.6	40	88	1	273	25	28	23	22	2.00
37027844--37028051	80	2.6	80	84	3	285	25	27	23	23	2.00
37035283--37035364	42	2.0	42	85	4	112	26	12	24	36	1.91
37037722--37037816	49	1.9	48	85	4	127	15	21	23	40	1.91
37040025--37040050	12	2.2	12	100	0	52	61	7	0	30	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37043544--37043607	20	3.2	20	74	12	58	48	4	10	35	1.59
37044639--37044679	20	2.2	20	86	8	59	70	2	4	21	1.18
37048793--37049011	40	5.5	40	84	4	239	22	22	28	26	1.99
37048793--37048977	81	2.3	80	85	3	237	21	22	28	28	1.99
37055529--37055553	12	2.1	12	100	0	50	40	12	16	32	1.84
37062525--37063162	47	13.6	47	97	0	1150	29	29	8	33	1.86
37062575--37062653	25	3.3	25	67	22	78	31	27	5	35	1.79
37076269--37076348	39	2.1	39	97	0	151	57	11	7	23	1.59
37077364--37077397	17	2.0	17	100	0	68	52	17	5	23	1.66
37083861--37083946	42	2.2	38	80	17	95	29	17	1	52	1.52
37086520--37086704	67	2.9	64	76	8	178	29	17	29	23	1.97
37095576--37095610	16	2.1	17	89	5	54	31	2	20	45	1.65
37098750--37098812	33	1.9	33	86	0	90	25	26	22	25	2.00
37100566--37100687	47	2.6	46	77	11	124	31	17	28	22	1.97
37104391--37104436	19	2.4	19	100	0	92	8	28	36	26	1.86
37110856--37110930	38	2.0	38	89	0	114	32	26	18	22	1.97
37116141--37116215	38	2.0	38	89	0	114	32	26	18	22	1.97
37117315--37117339	10	2.5	10	100	0	50	48	8	0	44	1.32
37127683--37127741	29	2.0	29	83	0	73	28	23	8	38	1.84
37129937--37129979	15	2.9	15	76	10	52	11	13	16	58	1.64
37147784--37148016	120	1.9	120	83	5	301	25	23	27	24	2.00
37147784--37148019	40	5.9	40	84	4	255	25	22	27	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37151712--37152090	47	8.1	47	94	0	625	31	8	30	28	1.88
37152209--37152286	37	2.1	36	86	6	104	25	17	30	25	1.97
37162695--37162722	14	2.0	14	100	0	56	28	7	21	42	1.79
37164660--37164731	33	2.2	33	94	0	126	43	12	4	40	1.62
37164670--37164721	15	3.3	15	72	15	50	42	15	3	38	1.65
37167935--37168302	46	7.8	47	75	12	258	24	31	18	25	1.97
37167931--37168163	96	2.4	94	77	10	249	25	30	17	26	1.97
37167945--37168350	46	8.6	45	73	12	198	24	30	18	26	1.98
37167988--37168302	138	2.2	144	81	11	366	24	31	18	25	1.97
37174412--37174449	15	2.6	14	88	12	58	39	0	0	60	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253