genome.fa.s4.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  133  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42363419--42363462	21	2.1	21	95	0	79	31	0	29	38	1.58
42363423--42363472	21	2.4	21	86	6	66	32	0	30	38	1.58
42366747--42366822	37	2.1	37	100	0	152	30	21	10	38	1.87
42370430--42370693	40	6.7	40	89	3	356	21	23	27	27	1.99
42370430--42370693	79	3.3	80	88	3	356	21	23	27	27	1.99
42370430--42370694	119	2.2	119	85	4	338	21	23	27	27	1.99
42378653--42378901	40	6.2	40	90	2	351	23	22	26	27	2.00
42378653--42378901	79	3.1	80	89	3	351	23	22	26	27	2.00
42378653--42378917	119	2.2	119	85	5	331	23	23	26	27	2.00
42381093--42381133	15	2.7	15	88	3	55	19	12	7	60	1.54
42381098--42381135	15	2.5	15	91	0	58	18	13	5	63	1.48
42383991--42384121	38	3.2	38	75	17	145	31	25	13	29	1.94
42384034--42384161	48	2.7	48	90	1	186	30	23	14	32	1.94
42386875--42386914	15	2.7	15	84	0	53	55	5	20	20	1.62
42390147--42390308	38	4.0	38	72	13	144	30	23	14	31	1.95
42390154--42390360	85	2.4	85	92	0	342	30	22	14	31	1.94
42390282--42390402	48	2.6	47	87	1	179	30	19	15	33	1.93
42398812--42398871	31	1.9	32	86	10	88	33	18	18	30	1.95
42405505--42405736	49	4.7	49	82	2	266	26	16	26	29	1.97
42405507--42405736	100	2.3	98	84	2	280	26	16	26	30	1.97
42410144--42410220	29	2.7	29	83	0	100	29	27	16	25	1.97
42411689--42411721	16	2.1	16	94	0	57	18	3	27	51	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42429539--42429570	16	2.0	16	93	0	55	28	43	21	6	1.77
42433935--42433999	29	2.2	29	83	5	78	24	27	15	32	1.95
42433898--42434032	58	2.4	57	81	5	139	25	29	14	30	1.95
42438397--42438442	25	1.9	24	82	8	58	26	21	23	28	1.99
42448155--42448183	14	2.0	15	93	6	51	27	0	20	51	1.47
42450974--42451367	47	8.4	47	92	1	610	29	30	8	31	1.87
42451284--42451359	22	3.3	22	64	10	62	28	31	10	28	1.90
42458534--42458654	40	3.0	39	89	2	170	23	19	27	29	1.98
42458552--42458701	40	3.8	38	80	8	122	24	22	28	24	1.99
42465776--42465940	39	4.2	39	89	6	228	26	28	22	23	1.99
42482878--42483051	45	3.8	46	75	16	173	21	20	28	30	1.98
42491502--42491721	39	5.6	39	83	6	232	25	28	21	24	1.99
42491502--42491722	77	2.8	78	85	4	275	25	28	21	24	1.99
42499494--42499716	119	1.9	120	84	6	301	25	27	22	24	2.00
42499492--42499716	40	5.7	40	85	6	287	25	28	22	24	2.00
42504970--42505036	34	2.0	34	90	0	107	28	20	22	28	1.99
42505016--42506174	590	2.0	590	99	0	2282	32	26	16	24	1.96
42514747--42514833	45	1.9	45	83	0	111	25	14	21	37	1.92
42516599--42516695	42	2.5	39	83	12	119	30	12	26	29	1.93
42516619--42516705	42	2.1	42	93	0	147	28	14	28	27	1.96
42519703--42519773	37	1.9	37	97	0	133	19	30	19	29	1.97
42521963--42522126	57	2.9	57	88	2	240	28	18	21	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42530267--42530529	46	5.6	47	78	7	234	22	28	19	29	1.98
42530267--42530529	140	1.9	141	84	4	352	22	28	19	29	1.98
42535685--42535715	15	2.1	15	100	0	62	48	12	0	38	1.42
42538021--42538061	18	2.1	21	86	13	61	53	7	9	29	1.60
42539501--42539540	19	2.1	19	95	0	71	62	10	7	20	1.50
42542264--42542355	46	2.0	46	95	0	166	32	19	15	32	1.93
42548423--42548488	31	2.1	31	100	0	132	46	0	28	24	1.52
42552946--42554801	926	2.0	926	100	0	3712	31	22	15	30	1.95
42556784--42556910	62	2.0	62	92	0	209	48	11	14	24	1.78
42560286--42560330	22	2.0	22	83	8	56	40	4	0	55	1.20
42562087--42562131	21	2.1	21	95	0	81	53	15	4	26	1.61
42563910--42563967	30	1.9	30	85	0	80	39	6	22	31	1.80
42566120--42566179	30	2.0	30	87	6	86	31	25	6	36	1.82
42572292--42572510	39	5.6	39	88	4	289	23	20	26	29	1.99
42572292--42572510	79	2.8	79	91	2	334	23	20	26	29	1.99
42579816--42579875	30	2.0	30	86	0	84	30	25	6	38	1.81
42581059--42581559	50	10.0	50	77	5	465	26	18	24	29	1.98
42581064--42581556	101	4.9	99	79	5	501	26	19	24	29	1.98
42581019--42581559	151	3.6	150	87	3	737	26	17	24	30	1.97
42585803--42585863	27	2.3	27	82	0	68	37	18	22	21	1.94
42585904--42585955	27	2.0	26	84	3	68	34	21	26	17	1.95
42586195--42586407	27	8.0	27	83	6	238	41	7	21	29	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42586195--42586407	104	2.0	107	87	5	308	41	7	21	29	1.79
42586201--42586407	80	2.6	77	85	6	238	41	7	21	29	1.80
42589570--42589613	22	2.0	22	86	0	61	43	0	2	54	1.12
42602918--42602975	29	2.0	29	100	0	116	24	24	20	31	1.98
42604230--42604302	36	2.0	36	100	0	146	24	10	8	56	1.61
42612637--42612814	27	6.6	27	85	3	205	29	29	14	26	1.95
42612637--42612814	54	3.3	54	85	3	232	29	29	14	26	1.95
42612658--42612813	81	1.9	82	88	3	235	29	29	14	26	1.95
42620893--42621070	27	6.6	27	85	3	205	29	29	14	26	1.95
42620893--42621070	54	3.3	54	85	3	232	29	29	14	26	1.95
42620914--42621069	81	1.9	82	88	3	235	29	29	14	26	1.95
42632854--42632968	27	4.3	26	83	5	113	37	20	20	20	1.95
42639014--42639133	56	2.1	56	96	0	222	45	9	22	22	1.80
42640581--42641127	47	11.6	47	92	3	775	33	9	29	28	1.88
42640978--42641099	22	5.3	22	62	21	61	33	11	29	25	1.91
42654329--42654443	43	2.7	42	80	11	135	31	26	16	25	1.96
42659710--42659830	47	2.6	47	77	5	136	20	17	30	31	1.96
42661021--42661129	27	4.0	26	86	4	128	34	20	23	21	1.96
42661419--42661526	47	2.3	47	83	0	117	26	12	25	35	1.91
42663777--42663815	19	2.1	19	85	0	51	71	7	5	15	1.26
42664254--42664368	55	2.1	56	83	8	146	34	21	24	19	1.96
42664279--42664368	27	3.2	27	85	7	119	32	23	24	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42664474--42664538	28	2.3	28	91	0	103	32	7	27	32	1.85
42665605--42665637	12	2.6	13	85	9	50	45	0	45	9	1.35
42668029--42668142	40	2.8	40	90	0	174	22	17	25	34	1.96
42673178--42673238	24	2.5	24	82	12	72	32	27	18	21	1.96
42682378--42682550	47	3.8	44	76	15	179	28	28	21	21	1.98
42682383--42682554	93	1.8	93	92	3	292	28	29	21	20	1.98
42689099--42689191	46	2.0	46	97	0	177	44	16	5	34	1.70
42689925--42690095	93	1.8	93	92	0	288	28	27	22	21	1.99
42689920--42690092	46	3.7	46	74	13	165	29	26	21	21	1.99
42689963--42690103	47	3.1	43	72	16	115	31	27	18	22	1.97
42690530--42690556	14	1.9	14	100	0	54	18	37	7	37	1.79
42698168--42698290	43	2.9	42	81	11	160	32	25	19	22	1.97
42704870--42704911	15	2.8	15	79	13	50	59	16	9	14	1.60
42707423--42707647	49	4.5	49	83	4	254	29	28	17	25	1.97
42707410--42707654	98	2.5	100	82	3	280	28	28	17	25	1.98
42712697--42712764	34	2.0	34	100	0	136	29	8	8	52	1.62
42713309--42713362	27	2.0	27	85	0	72	35	29	12	22	1.91
42719170--42719328	43	3.7	42	76	15	130	31	25	18	24	1.98
42722440--42722591	42	3.6	43	76	12	127	31	23	17	28	1.96
42722417--42722591	43	4.1	42	74	12	124	32	23	16	27	1.96
42723790--42723831	22	1.9	22	85	0	57	30	19	23	26	1.98
42724193--42724431	27	8.9	27	81	9	134	33	9	17	39	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42724196--42724433	54	4.4	53	83	5	212	33	9	17	39	1.81
42724250--42724443	81	2.4	81	85	5	252	31	8	19	39	1.82
42724225--42724443	27	8.1	27	83	8	175	32	9	18	40	1.82
42729925--42730212	48	6.0	48	90	1	445	34	6	28	30	1.82
42729925--42730212	142	2.0	143	91	1	461	34	6	28	30	1.82
42729925--42730203	94	2.9	94	89	1	423	34	6	27	31	1.82
42729947--42730234	94	3.0	93	81	10	352	33	6	29	31	1.82
42730353--42730492	37	3.8	37	93	0	235	24	18	32	25	1.97
42736722--42736748	14	1.9	14	100	0	54	22	0	25	51	1.48
42752971--42753115	43	3.4	43	81	6	161	31	26	17	24	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253