genome.fa.s4.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  115  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36132158--36132379	79	2.8	79	81	9	263	25	21	27	26	1.99
36132158--36132365	40	5.2	40	84	7	262	24	21	27	25	1.99
36140352--36140540	39	4.8	40	78	9	181	25	20	28	25	1.99
36148000--36148193	47	4.1	47	93	0	325	24	28	11	35	1.90
36152000--36152037	20	2.0	20	89	5	60	10	10	2	76	1.12
36153664--36153884	40	5.6	40	84	4	279	26	27	21	24	1.99
36157110--36157137	14	2.0	14	100	0	56	57	0	0	42	0.99
36159777--36159828	16	3.2	16	80	0	59	48	21	17	13	1.81
36161068--36161108	22	1.9	21	85	5	55	31	2	2	63	1.20
36163228--36163306	38	2.1	39	97	2	151	17	30	11	40	1.85
36166802--36166879	29	2.8	28	82	7	86	24	15	30	29	1.95
36174553--36174924	47	8.1	47	87	4	463	34	10	28	26	1.89
36174553--36174852	140	2.1	141	90	0	458	34	10	27	27	1.90
36174898--36175062	46	3.6	46	94	0	267	34	9	31	24	1.87
36176557--36176931	40	9.4	40	91	2	610	25	19	26	27	1.99
36176959--36177090	57	2.3	57	87	3	187	22	19	29	28	1.98
36176963--36177062	28	3.5	28	76	8	103	22	21	28	29	1.99
36176991--36177091	28	3.6	28	75	9	80	23	18	29	27	1.98
36180865--36181196	47	7.1	47	93	0	511	33	11	28	26	1.91
36181182--36181306	46	2.7	46	92	0	196	33	10	32	24	1.89
36180865--36181291	141	3.0	138	82	6	391	33	11	29	25	1.91
36184277--36184456	79	2.3	80	79	7	197	25	27	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36184253--36184456	40	5.1	40	80	8	220	25	26	22	25	2.00
36187154--36187302	28	5.3	28	94	0	235	34	26	12	27	1.92
36194467--36194560	27	3.6	26	90	7	111	32	26	12	27	1.93
36194467--36194585	28	4.4	28	86	10	149	33	26	12	26	1.92
36194466--36194585	53	2.2	54	83	5	154	33	27	12	26	1.92
36219399--36219580	40	4.6	39	86	5	208	24	21	28	25	1.99
36219399--36219603	40	5.2	40	79	10	190	24	21	27	25	1.99
36219399--36219603	79	2.6	79	80	8	256	24	21	27	25	1.99
36228903--36229014	57	2.0	57	92	0	188	34	14	21	29	1.93
36231085--36231302	40	5.5	40	91	2	282	23	23	27	24	2.00
36231993--36232112	56	2.1	56	98	0	231	45	9	23	22	1.81
36233238--36233388	40	3.8	40	83	10	177	24	22	28	24	1.99
36233238--36233388	79	1.9	80	85	6	209	24	22	28	24	1.99
36233291--36233415	39	3.2	39	84	8	148	25	20	28	25	1.99
36235956--36236080	46	2.7	47	84	10	159	29	20	28	21	1.98
36238922--36238971	23	2.2	23	96	0	91	14	36	26	24	1.93
36245311--36245533	46	4.8	48	79	6	235	22	29	19	28	1.98
36254164--36254223	25	2.3	27	80	11	72	38	1	5	55	1.32
36255172--36255203	5	6.2	5	92	7	55	0	21	0	78	0.76
36255172--36255227	15	3.6	16	80	7	62	3	26	0	69	1.04
36260767--36261224	94	4.9	94	81	6	466	28	19	28	23	1.98
36260767--36261230	47	9.9	45	71	13	258	28	19	28	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36268653--36268939	40	7.2	40	91	0	468	23	21	25	29	1.99
36275606--36275661	19	3.1	19	72	15	64	32	7	17	42	1.77
36275604--36275670	35	2.0	35	88	5	102	31	5	14	47	1.69
36276423--36276669	40	6.2	40	96	0	440	21	21	26	29	1.99
36276535--36276600	22	3.2	22	62	16	59	22	19	25	31	1.98
36280125--36280340	119	1.8	120	85	7	305	26	26	21	25	1.99
36280104--36280347	40	6.1	40	82	6	273	25	27	21	25	1.99
36285176--36285537	47	7.7	45	75	13	261	27	21	27	22	1.99
36285179--36285537	94	3.8	93	80	9	410	28	20	27	23	1.99
36285176--36285537	141	2.6	135	80	9	372	27	21	27	22	1.99
36288489--36288682	25	8.0	24	80	7	87	24	22	19	34	1.97
36288585--36288696	25	4.5	25	91	7	174	33	22	18	25	1.97
36288722--36288774	27	2.0	27	100	0	106	26	22	18	32	1.97
36298128--36298275	43	3.5	42	74	10	131	27	18	26	28	1.98
36304566--36304640	25	3.0	25	74	18	66	30	17	25	26	1.97
36305674--36305779	27	4.0	26	85	6	122	37	20	22	18	1.94
36306083--36306161	27	3.0	26	81	5	86	35	20	22	21	1.96
36306389--36306503	27	4.3	27	88	0	158	26	20	18	34	1.96
36316751--36316966	119	1.8	120	84	7	296	25	27	21	25	1.99
36316749--36316973	79	2.8	79	83	5	256	25	28	21	24	1.99
36316749--36316973	40	5.7	40	84	6	278	25	28	21	24	1.99
36321329--36321407	37	2.1	37	90	0	122	24	32	20	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36321526--36322246	47	15.2	47	94	2	1228	29	28	8	32	1.87
36321526--36322470	94	10.1	94	86	8	1304	29	28	8	32	1.87
36322205--36322277	31	2.4	31	95	4	130	26	30	10	32	1.90
36322158--36322314	78	2.0	78	96	0	287	28	29	10	32	1.90
36322236--36322470	49	4.9	47	91	4	389	29	27	9	33	1.88
36322236--36322470	96	2.4	97	94	2	413	29	27	9	33	1.88
36325809--36325833	5	5.0	5	100	0	50	40	20	40	0	1.52
36327732--36327786	28	2.0	27	82	6	67	34	9	27	29	1.87
36327804--36327872	16	4.3	16	92	0	111	39	2	34	23	1.70
36327851--36327948	44	2.2	44	87	5	135	30	5	28	35	1.79
36328105--36328139	18	2.0	17	88	5	52	54	0	0	45	0.99
36328183--36328232	26	2.0	26	84	4	66	48	4	4	44	1.40
36328220--36328256	16	2.2	17	86	13	51	54	0	2	43	1.14
36328133--36328317	60	3.1	60	69	16	161	47	6	3	43	1.45
36328340--36328376	16	2.2	17	86	13	51	54	0	2	43	1.14
36328085--36328377	117	2.5	117	93	2	498	47	4	2	45	1.37
36328359--36328526	47	3.7	46	72	18	161	46	2	2	47	1.33
36328418--36328560	44	3.2	43	71	20	139	48	2	2	46	1.25
36328384--36328599	91	2.4	91	91	0	342	45	3	2	48	1.33
36328440--36328584	47	3.2	45	71	16	136	48	2	2	46	1.28
36334670--36334954	40	7.2	40	86	3	407	28	26	20	24	1.99
36336344--36336371	13	2.2	13	100	0	56	57	14	0	28	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36337151--36337309	29	5.6	29	73	3	151	16	18	35	28	1.93
36337123--36337334	28	7.5	28	71	3	163	17	19	33	28	1.95
36337121--36337348	57	4.0	57	92	0	375	18	18	34	28	1.95
36342298--36342376	28	2.8	28	86	0	104	34	11	25	29	1.91
36349214--36349264	21	2.5	21	90	3	77	50	9	1	37	1.47
36349795--36349823	5	5.8	5	100	0	58	17	0	0	82	0.66
36350708--36350743	18	2.0	18	100	0	72	44	22	11	22	1.84
36352507--36352546	19	2.1	19	85	0	53	42	12	10	35	1.76
36353297--36353330	16	2.0	18	88	11	54	44	17	2	35	1.64
36355563--36355604	22	1.9	22	95	0	75	19	23	9	47	1.78
36357679--36357833	42	3.7	41	78	6	150	30	16	25	27	1.96
36361900--36362146	40	6.2	40	95	0	422	29	24	23	23	1.99
36362908--36362963	19	3.1	19	72	15	64	42	17	7	32	1.77
36364433--36364484	28	2.0	25	85	11	68	13	23	25	38	1.91
36364618--36364715	28	3.4	28	74	10	70	27	21	24	26	1.99
36375666--36375848	40	4.6	39	83	6	188	25	21	27	25	1.99
36375667--36375848	80	2.3	81	81	4	210	25	21	27	25	1.99
36379471--36379624	42	3.6	42	84	5	193	33	16	22	27	1.95
36385617--36385665	19	2.5	19	90	3	71	63	4	4	28	1.31
36397116--36397160	21	2.1	21	84	8	56	42	2	0	55	1.12
36397175--36397200	12	2.2	12	100	0	52	46	0	0	53	1.00
36397220--36397296	29	2.7	27	82	10	73	53	1	1	44	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36398214--36398255	17	2.5	17	81	14	59	19	4	0	76	0.96
36398221--36398255	15	2.2	17	90	10	56	20	5	0	74	1.02
36403587--36403624	20	1.9	20	88	0	58	36	31	13	18	1.89
36403852--36403878	9	3.0	9	100	0	54	44	0	11	44	1.39
36407293--36407368	40	1.9	40	88	0	116	21	15	30	32	1.94
36407373--36407441	28	2.5	28	82	0	84	28	7	30	33	1.84
36414055--36414099	14	3.0	15	83	6	56	60	15	15	8	1.59
36417012--36417234	47	4.7	47	92	1	349	32	8	30	28	1.88
36417059--36417137	25	3.3	25	61	10	65	32	5	29	32	1.79
36417353--36417431	37	2.1	37	90	0	122	24	18	31	25	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253