genome.fa.s4.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  146  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46819154--46819322	48	3.6	47	79	10	168	26	31	15	26	1.96
46819195--46819350	48	3.4	45	81	12	142	25	31	17	25	1.97
46820950--46821043	9	10.7	9	76	11	70	48	17	0	34	1.47
46820960--46821043	36	2.4	34	96	4	150	48	16	0	34	1.47
46821751--46821776	9	2.9	9	100	0	52	46	11	0	42	1.40
46829158--46829291	43	3.1	43	76	14	127	33	25	14	26	1.95
46840493--46840668	46	3.8	46	77	11	189	19	20	30	29	1.97
46840489--46840660	93	1.8	93	90	2	274	19	20	30	28	1.97
46843076--46843122	20	2.3	20	96	0	85	17	34	31	17	1.92
46843760--46843860	50	2.0	50	92	0	166	31	21	22	23	1.98
46848043--46848304	47	5.6	46	77	9	187	28	18	29	22	1.98
46848040--46848211	46	3.7	46	78	9	149	27	19	30	22	1.98
46848084--46848304	47	4.8	48	76	8	192	28	18	30	22	1.97
46855969--46856045	37	2.0	38	82	12	95	29	2	1	66	1.13
46858370--46858401	14	2.4	13	90	10	55	18	6	12	62	1.50
46862950--46863105	82	1.9	81	85	3	215	26	16	28	28	1.97
46862949--46863102	55	2.9	52	82	7	175	27	16	27	27	1.97
46862950--46863105	27	5.7	27	81	6	163	26	16	28	28	1.97
46862942--46863126	27	6.8	27	75	9	101	26	16	28	29	1.97
46862942--46863126	82	2.3	81	78	2	210	26	16	28	29	1.97
46867308--46867626	162	2.0	162	95	0	575	31	10	16	42	1.81
46876307--46876546	116	2.1	116	88	1	356	26	23	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46879486--46879581	42	2.3	43	79	1	113	26	17	28	28	1.98
46884728--46884878	43	3.5	43	79	2	169	26	16	25	31	1.96
46890247--46890310	29	2.3	28	82	15	71	29	23	3	43	1.69
46896146--46896222	29	2.7	29	85	0	109	28	28	16	25	1.97
46900518--46900617	29	3.5	29	81	11	125	26	27	17	30	1.97
46902582--46902662	40	2.0	40	85	0	108	30	18	17	33	1.94
46902690--46902779	40	2.2	40	80	5	110	33	21	22	23	1.97
46903017--46903091	37	2.0	37	82	5	89	17	0	41	41	1.49
46902973--46903051	15	5.4	15	77	6	63	20	1	35	43	1.60
46903029--46903073	14	3.0	16	87	9	60	15	0	46	37	1.46
46903029--46903073	22	2.0	23	91	4	74	15	0	46	37	1.46
46903029--46903073	8	6.0	8	80	15	60	15	0	46	37	1.46
46903141--46903188	16	3.0	16	93	0	78	35	6	29	29	1.82
46903142--46903195	16	3.4	16	89	0	63	37	3	25	33	1.74
46903177--46903269	44	2.1	46	86	8	129	34	3	23	38	1.71
46903342--46903392	26	2.0	26	88	3	77	41	0	9	49	1.36
46906841--46906940	49	2.0	49	96	0	182	20	23	11	46	1.82
46907886--46908013	37	3.7	36	71	20	121	45	30	0	23	1.59
46907893--46908153	65	4.0	64	86	5	289	44	34	0	21	1.56
46908121--46908168	21	2.2	22	88	3	71	52	27	0	20	1.47
46907908--46908203	129	2.3	129	81	6	309	45	31	0	21	1.57
46908943--46908988	19	2.4	19	85	0	65	6	47	6	39	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46909074--46909124	9	5.7	9	82	15	61	5	7	31	54	1.53
46909069--46909124	26	2.2	26	96	0	103	5	7	32	55	1.50
46909084--46909115	17	1.9	16	93	6	55	3	6	34	56	1.40
46910994--46911019	8	3.2	8	100	0	52	26	11	0	61	1.30
46911379--46911409	14	2.2	14	94	0	53	38	22	6	32	1.80
46911450--46911504	15	3.7	15	82	4	76	47	0	0	52	1.00
46911448--46911511	29	2.2	29	100	0	128	46	0	0	53	1.00
46911709--46911790	30	2.9	27	81	10	110	48	12	1	37	1.48
46911734--46911782	15	3.1	17	68	31	54	51	10	2	36	1.48
46911709--46911814	30	3.6	29	78	16	103	47	13	1	37	1.54
46911813--46911854	9	4.7	9	87	0	66	47	21	0	30	1.51
46917119--46917405	43	6.7	43	85	4	303	25	19	24	29	1.98
46917103--46917411	129	2.4	129	83	1	361	24	18	25	30	1.98
46919451--46919547	40	2.5	38	81	6	113	35	37	13	14	1.85
46919470--46919545	40	1.9	40	88	0	116	35	34	14	15	1.88
46929975--46930090	24	4.4	27	83	15	163	35	14	24	25	1.94
46929975--46930090	52	2.2	52	96	0	214	35	14	24	25	1.94
46933426--46933552	29	4.5	28	87	3	155	32	25	12	29	1.93
46933425--46933553	57	2.3	57	86	2	179	31	27	12	28	1.93
46937302--46937327	12	2.2	12	100	0	52	15	11	15	57	1.65
46938030--46938251	47	4.8	45	70	11	141	27	21	28	22	1.99
46940786--46940840	25	2.2	25	83	6	67	50	20	7	21	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46947510--46947644	54	2.4	54	84	8	155	25	18	25	30	1.98
46953673--46953881	51	4.1	51	93	1	339	30	14	23	31	1.95
46954932--46955003	24	3.0	24	89	0	108	36	15	20	27	1.93
46954979--46955077	49	2.0	49	92	0	162	29	17	22	31	1.96
46955088--46955336	51	4.9	51	87	1	338	32	12	25	29	1.93
46961841--46961936	24	4.0	24	95	0	174	38	15	20	25	1.92
46961972--46962166	51	3.8	51	89	3	286	31	11	25	32	1.91
46968040--46968203	42	3.9	42	85	1	229	26	21	17	34	1.96
46968044--46968203	85	1.9	84	86	1	230	26	21	17	34	1.95
46972138--46972377	81	3.0	81	88	2	313	29	21	7	41	1.80
46972138--46972381	27	9.0	27	82	3	258	29	20	7	41	1.80
46972386--46972579	27	7.2	27	85	0	228	36	18	19	26	1.94
46972386--46972580	54	3.6	54	87	0	257	35	18	18	26	1.94
46972893--46972951	22	2.7	22	81	0	64	22	25	22	30	1.99
46973070--46973128	22	2.7	22	81	0	64	20	25	22	32	1.98
46972836--46973208	177	2.1	177	94	0	674	20	21	23	34	1.97
46973293--46973366	27	2.8	27	83	6	80	17	22	21	37	1.94
46973484--46973670	6	30.8	6	73	16	154	20	18	13	47	1.82
46973484--46973670	30	6.4	30	81	9	215	20	18	13	47	1.82
46973484--46973670	85	2.2	85	95	0	329	20	18	13	47	1.82
46973484--46973691	30	7.1	30	78	11	207	20	18	13	47	1.82
46975689--46976010	27	11.9	27	83	1	326	28	20	8	42	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46975656--46976015	54	6.7	54	81	5	309	28	21	8	40	1.83
46975687--46976015	81	4.1	81	84	2	428	28	20	8	42	1.82
46976028--46976188	27	6.0	27	83	2	180	36	19	18	25	1.94
46976018--46976189	54	3.2	55	87	4	242	37	18	18	26	1.93
46976387--46976469	27	3.1	26	84	5	103	19	20	21	38	1.93
46976557--46976615	22	2.7	22	78	0	55	22	25	20	32	1.98
46976500--46976867	177	2.1	177	97	0	700	20	22	22	35	1.96
46976957--46977030	27	2.8	27	83	6	80	17	22	21	37	1.94
46977173--46977334	6	26.8	6	73	17	131	19	16	12	50	1.77
46977148--46977334	85	2.2	85	90	3	288	19	17	12	50	1.78
46977148--46977334	30	6.4	30	77	13	192	19	17	12	50	1.78
46980089--46980390	27	11.2	27	84	2	383	27	22	9	40	1.85
46980395--46980574	54	3.3	54	88	1	238	37	18	17	26	1.93
46980402--46980588	27	6.9	27	83	2	205	36	17	19	26	1.94
46980789--46980871	27	3.1	25	83	8	85	20	21	19	38	1.93
46980959--46981017	22	2.7	22	81	0	64	22	25	22	30	1.99
46981136--46981194	22	2.7	22	81	0	64	20	25	22	32	1.98
46980902--46981273	177	2.1	177	94	0	654	20	21	22	35	1.96
46981359--46981433	27	2.8	27	84	6	82	17	22	21	38	1.93
46981550--46981730	6	29.8	6	72	16	142	20	18	13	47	1.82
46981550--46981730	30	6.2	30	81	9	212	20	18	13	47	1.82
46981550--46981730	85	2.1	85	95	0	326	20	18	13	47	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46984486--46984518	16	2.0	17	88	5	50	39	15	3	42	1.62
46984632--46984828	55	3.6	54	82	2	225	21	24	17	36	1.95
46984833--46984885	26	2.0	26	100	0	106	37	26	11	24	1.89
46987593--46987631	20	2.0	20	85	10	53	46	17	0	35	1.49
46998311--46998355	20	2.2	20	84	7	56	37	13	2	46	1.55
46998808--46998841	17	2.0	17	88	0	50	23	17	11	47	1.81
47000229--47000291	25	2.5	25	76	0	72	28	23	19	28	1.98
47008496--47008678	79	2.3	81	84	7	232	24	22	27	25	2.00
47008497--47008680	40	4.6	40	83	9	216	23	22	28	25	2.00
47008549--47008713	79	2.1	79	84	6	210	25	21	27	25	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253