genome.fa.s4.2.7.7.80.10.50.1000.214.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  214  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70604952--70604996	21	2.1	21	95	0	81	24	0	28	46	1.53
70606436--70606494	27	2.1	28	87	3	84	42	11	15	30	1.83
70607658--70607725	10	7.6	9	73	16	52	67	1	0	30	0.99
70607662--70607733	19	3.8	19	74	5	56	63	1	1	33	1.11
70607681--70607764	29	2.9	28	84	10	98	61	1	2	34	1.16
70607684--70607765	10	8.3	10	70	8	53	62	1	2	34	1.16
70608964--70608989	11	2.4	11	100	0	52	73	0	0	26	0.84
70616963--70617154	47	4.0	47	79	7	172	24	17	29	28	1.97
70623823--70623982	45	3.6	45	91	4	227	25	28	17	28	1.98
70624415--70624471	30	1.9	30	88	0	87	33	17	5	43	1.71
70626353--70626388	18	2.0	18	94	0	63	30	22	5	41	1.76
70629917--70630227	47	6.7	44	73	16	197	22	28	18	29	1.98
70629962--70630227	141	1.9	141	82	5	340	22	28	19	29	1.98
70633948--70634047	50	2.0	50	98	0	191	53	6	3	38	1.41
70636449--70636505	27	2.1	28	83	3	71	29	15	7	47	1.72
70637163--70637192	12	2.4	13	94	5	53	0	26	0	73	0.84
70639567--70639598	2	16.0	2	100	0	64	50	50	0	0	1.00
70646673--70646905	123	1.9	124	84	9	316	30	15	18	36	1.92
70665456--70665500	19	2.3	20	88	7	67	35	0	4	60	1.17
70665444--70665500	19	3.1	19	82	12	66	40	0	3	56	1.17
70672852--70672889	11	3.1	12	85	14	51	42	0	0	57	0.98
70672942--70672975	12	2.8	12	86	4	50	70	0	29	0	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70673397--70673439	21	2.0	21	100	0	86	41	0	18	39	1.51
70673711--70673755	5	8.6	5	85	5	54	35	0	22	42	1.54
70673709--70673755	15	3.0	15	82	17	60	34	0	23	42	1.54
70675524--70675695	50	3.4	50	76	2	175	37	19	15	27	1.91
70675524--70675695	25	6.9	25	62	15	68	37	19	15	27	1.91
70678546--70678605	21	2.9	21	84	0	75	23	30	35	11	1.90
70681953--70682042	31	2.9	31	91	3	137	25	18	28	26	1.98
70686139--70686243	21	5.0	21	69	14	65	40	16	20	21	1.91
70686153--70686232	42	1.9	42	84	5	108	43	16	18	21	1.88
70686228--70686272	20	2.2	20	96	0	81	33	13	22	31	1.92
70688441--70688538	47	2.1	47	100	0	196	40	13	20	25	1.88
70689508--70689537	16	1.9	16	93	6	53	66	10	3	20	1.35
70689620--70689671	17	3.2	16	78	7	52	71	3	0	25	1.03
70715769--70715940	93	1.8	93	93	0	299	27	29	20	22	1.99
70715762--70715937	46	3.8	46	78	12	198	28	28	20	21	1.98
70723306--70723477	93	1.8	93	92	0	290	27	29	20	22	1.99
70723299--70723474	46	3.8	46	76	12	189	28	28	20	21	1.98
70723348--70723486	47	3.0	46	74	16	135	29	28	19	23	1.98
70733431--70733471	17	2.4	17	87	0	55	75	0	4	19	0.98
70742606--70742831	58	3.9	58	83	4	253	36	9	22	32	1.86
70742606--70742831	115	2.0	116	83	4	287	36	9	22	32	1.86
70745838--70745918	3	27.3	3	77	16	80	34	0	2	62	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70745838--70745918	40	2.0	40	86	9	112	34	0	2	62	1.08
70749038--70749288	69	3.6	69	75	3	227	21	23	24	31	1.98
70749176--70749310	69	2.0	69	85	2	182	23	22	22	31	1.98
70759316--70759505	94	2.0	94	100	0	380	37	10	9	42	1.72
70760418--70760460	22	2.0	22	90	0	68	23	23	11	41	1.87
70778583--70778626	13	3.5	13	87	6	54	79	2	0	18	0.83
70788693--70788740	19	2.6	19	86	3	71	35	2	14	47	1.56
70788760--70788844	42	2.2	37	75	18	98	30	4	16	48	1.67
70790100--70790394	9	31.1	9	68	17	102	61	2	3	33	1.24
70790170--70790394	9	24.0	9	69	19	106	60	1	3	33	1.24
70790102--70790316	93	2.3	93	95	2	376	61	1	2	33	1.21
70790590--70790646	20	3.0	19	72	7	53	36	1	0	61	1.07
70790597--70790646	19	2.7	18	77	20	57	36	2	0	62	1.07
70790542--70790656	46	2.5	47	77	11	112	35	1	2	60	1.21
70790678--70790865	86	2.2	86	84	2	243	30	8	20	39	1.83
70801954--70802163	40	5.3	40	86	5	259	23	22	28	26	1.99
70804693--70804833	43	3.3	42	77	6	115	26	19	26	26	1.99
70804741--70804843	42	2.4	42	74	16	95	26	21	27	25	1.99
70808092--70808140	24	2.0	24	100	0	98	38	28	4	28	1.75
70817951--70818197	40	6.2	40	87	3	304	25	27	23	23	2.00
70843190--70843235	22	2.1	22	91	0	74	41	0	4	54	1.20
70844168--70844228	30	2.0	30	93	0	104	39	6	21	32	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70845417--70845446	12	2.5	12	88	0	51	40	40	13	6	1.71
70847669--70847843	46	3.8	46	76	13	205	29	30	20	20	1.97
70847677--70847848	93	1.8	93	93	0	299	29	30	20	19	1.97
70847674--70847863	46	4.1	45	71	11	107	30	29	20	20	1.97
70850749--70850888	27	5.2	26	77	6	111	30	19	15	35	1.92
70850749--70850853	54	1.9	54	84	3	140	30	18	14	37	1.90
70850750--70850888	54	2.6	54	79	2	136	30	19	15	34	1.92
70850872--70851107	27	8.7	27	76	8	120	29	8	22	38	1.85
70850927--70851107	54	3.3	54	83	2	211	28	8	22	40	1.83
70850927--70851119	27	7.1	27	80	5	183	27	9	23	38	1.86
70850909--70851132	81	2.8	80	73	8	211	28	10	23	38	1.87
70853364--70853447	31	2.7	31	90	1	125	29	27	14	28	1.95
70853471--70853604	42	3.2	42	95	0	241	35	19	14	30	1.92
70853755--70853821	25	2.7	26	86	4	84	23	20	28	26	1.99
70854722--70854966	27	9.0	26	79	10	138	31	6	19	42	1.78
70854751--70854975	54	4.1	54	77	11	176	31	5	20	42	1.75
70854752--70854960	81	2.6	81	75	8	201	31	6	19	43	1.75
70854808--70855155	27	12.9	27	83	2	164	34	7	21	36	1.81
70854926--70855134	54	3.9	53	79	6	204	36	7	22	32	1.83
70854925--70855134	81	2.6	81	83	1	269	36	7	22	32	1.83
70857282--70857415	42	3.2	42	98	0	259	33	20	14	31	1.93
70858412--70858475	27	2.4	27	82	7	78	21	25	18	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70858506--70858749	27	9.0	27	76	7	136	31	7	18	42	1.78
70858620--70858744	54	2.3	54	87	5	173	28	8	18	44	1.78
70858737--70858890	27	5.7	27	88	0	200	40	7	21	30	1.81
70858711--70858884	81	2.1	81	78	0	177	40	8	18	33	1.80
70858737--70858918	81	2.2	81	82	0	211	39	8	20	31	1.82
70858746--70858890	54	2.7	54	89	0	227	41	8	21	28	1.82
70860955--70861069	31	3.7	31	87	1	169	30	25	15	28	1.96
70861093--70861226	42	3.2	42	93	0	223	32	19	14	32	1.92
70861625--70861791	27	6.2	27	79	8	178	27	20	16	35	1.94
70861624--70861791	54	3.1	54	92	1	257	27	20	17	35	1.95
70861776--70862010	27	8.7	26	79	10	129	29	7	22	40	1.82
70861830--70862035	27	7.6	27	83	5	184	28	9	22	39	1.85
70861830--70862035	81	2.5	80	81	5	243	28	9	22	39	1.85
70875518--70875547	13	2.4	12	89	10	51	16	0	36	46	1.47
70878193--70878245	23	2.4	22	81	12	63	49	15	3	32	1.62
70886595--70886729	55	2.5	55	74	2	137	12	25	32	29	1.92
70917137--70917264	68	1.9	68	90	3	204	32	15	26	25	1.95
70918336--70918370	17	2.1	17	100	0	70	34	5	22	37	1.78
70920893--70920954	10	6.1	10	84	1	61	25	4	1	67	1.19
70920895--70920952	30	1.9	30	86	6	82	24	5	1	68	1.19
70924665--70924765	4	24.8	4	73	18	59	26	1	0	70	1.04
70924666--70924759	7	13.3	7	72	16	70	27	2	1	69	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70924645--70924727	10	7.9	10	75	19	62	20	3	1	74	1.03
70924666--70924765	25	4.0	24	78	18	105	27	2	1	70	1.05
70924644--70924727	32	2.7	29	80	12	78	20	3	1	75	1.03
70924665--70924744	25	3.2	25	87	7	110	26	1	1	71	1.01
70925662--70925843	96	1.9	97	89	3	287	27	14	25	32	1.95
70925855--70925881	11	2.5	11	100	0	54	92	0	7	0	0.38
70926511--70926572	10	6.1	10	84	1	61	25	4	1	67	1.19
70926513--70926570	30	1.9	30	86	6	82	24	5	1	68	1.19
70932798--70932850	23	2.4	22	84	6	70	43	18	5	32	1.74
70933476--70933519	20	2.2	20	83	0	52	79	9	2	9	1.02

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253