genome.fa.s4.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  137  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43919228--43919307	42	1.9	42	92	5	135	32	22	15	30	1.94
43919225--43919316	42	2.2	42	84	11	134	31	23	13	31	1.93
43932026--43932063	18	2.2	18	86	9	53	23	13	15	47	1.81
43932060--43932113	27	2.0	27	88	0	81	37	16	9	37	1.81
43935663--43935891	87	2.6	89	85	4	297	47	11	13	27	1.77
43936601--43936671	30	2.4	30	84	11	92	67	0	0	32	0.91
43937054--43937090	11	3.1	13	81	18	53	32	0	0	67	0.91
43937058--43937095	11	3.2	12	81	11	51	34	0	0	65	0.93
43937214--43937272	30	2.0	30	96	0	109	57	11	3	27	1.50
43937305--43937347	22	2.0	22	85	0	59	58	11	11	18	1.63
43938754--43938802	24	2.0	24	96	0	89	26	20	10	42	1.84
43940322--43940354	12	2.8	12	95	0	57	36	18	12	33	1.88
43942335--43942391	30	1.9	30	85	0	78	28	22	7	42	1.80
43944784--43945171	48	8.0	48	80	6	408	27	17	27	28	1.97
43944784--43945160	96	3.9	96	88	1	522	27	16	28	27	1.97
43951091--43951156	28	2.4	28	84	0	87	15	19	45	19	1.85
43957758--43957794	18	2.1	18	94	0	65	24	18	5	51	1.67
43958573--43958954	48	7.9	49	79	7	372	27	17	27	27	1.98
43958573--43958946	96	3.9	95	87	2	514	27	17	27	27	1.98
43966762--43967205	50	8.8	50	75	3	356	26	17	25	30	1.97
43966762--43966994	101	2.3	102	85	0	306	24	17	26	32	1.97
43966812--43967202	150	2.6	151	87	1	561	26	17	25	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43985810--43985935	47	2.7	47	79	8	139	26	19	29	24	1.99
44001637--44001725	42	2.1	43	89	6	137	24	32	21	21	1.98
44004795--44004881	27	3.2	27	85	3	113	35	20	25	18	1.95
44004984--44005047	26	2.4	26	81	2	74	29	9	23	37	1.86
44005145--44005183	19	2.0	20	95	5	71	30	30	12	25	1.93
44006784--44006816	3	11.3	3	87	6	50	66	0	3	30	1.06
44013374--44013407	17	2.0	17	88	11	52	64	17	2	14	1.40
44014488--44014550	27	2.3	27	78	13	74	44	4	3	47	1.40
44023283--44023474	47	4.1	47	90	0	285	31	9	31	27	1.89
44025554--44025635	29	2.8	29	85	5	112	25	14	32	26	1.95
44025938--44026131	40	4.9	40	79	7	166	25	22	27	24	2.00
44025984--44026131	78	1.9	79	84	4	201	27	20	27	24	1.99
44029526--44029716	47	4.1	47	90	1	285	31	9	30	27	1.89
44033192--44033236	23	2.0	23	86	0	63	31	24	6	37	1.81
44038257--44038383	44	2.9	43	83	8	152	23	17	25	33	1.96
44038258--44038396	42	3.2	42	80	7	138	25	17	23	32	1.97
44051486--44051647	35	4.6	35	76	3	164	29	11	18	41	1.85
44053920--44054030	27	4.1	27	83	6	120	34	23	22	19	1.97
44053946--44054034	27	3.3	28	84	6	121	34	23	22	19	1.96
44061560--44061609	26	1.9	26	95	0	91	24	16	24	36	1.94
44062780--44062832	28	1.9	27	84	3	70	33	30	15	20	1.93
44064704--44064881	27	6.6	27	83	3	205	26	15	28	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44064705--44064860	82	1.9	81	88	3	233	26	15	28	29	1.96
44064701--44064881	82	2.2	81	83	2	229	27	15	27	29	1.96
44071889--44072066	27	6.6	27	82	3	196	27	14	28	29	1.95
44071890--44072045	82	1.9	81	86	3	224	27	14	28	29	1.95
44071886--44072066	82	2.2	81	82	2	220	27	14	27	29	1.96
44076153--44076190	19	2.0	20	85	15	53	39	23	0	36	1.55
44076409--44076529	46	2.7	46	92	1	190	29	28	20	21	1.98
44076407--44076548	46	3.1	45	83	7	128	29	28	20	21	1.98
44083651--44083688	19	2.0	20	85	15	53	39	23	0	36	1.55
44083918--44084087	93	1.8	92	92	1	286	28	28	20	22	1.99
44083913--44084084	45	3.7	46	78	11	199	29	27	20	22	1.98
44088793--44088914	42	2.9	42	81	2	145	30	13	22	32	1.93
44088803--44088914	43	2.7	43	80	2	129	30	15	22	32	1.94
44091013--44091199	100	1.9	100	91	0	311	26	18	25	29	1.98
44091018--44091205	49	3.8	49	82	2	223	27	17	25	30	1.97
44093123--44093196	29	2.6	29	84	0	94	22	32	25	18	1.97
44105700--44105797	40	2.5	40	88	5	137	22	29	23	24	1.99
44113214--44113320	24	4.7	22	82	8	117	25	19	17	37	1.94
44113214--44113342	24	5.5	24	78	7	113	27	20	17	34	1.95
44113225--44113319	48	2.0	48	85	4	131	24	20	16	38	1.92
44117075--44117167	43	2.2	43	88	0	132	22	17	26	33	1.96
44117075--44117190	43	2.7	43	83	2	117	25	17	25	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44122431--44122475	23	2.0	23	95	0	81	31	22	13	33	1.92
44127118--44127302	40	4.6	40	90	2	266	26	27	22	23	2.00
44127102--44127302	80	2.5	79	89	3	296	26	26	22	24	2.00
44135439--44135627	40	4.7	40	88	3	247	28	28	21	21	1.99
44135439--44135627	81	2.3	80	86	4	247	28	28	21	21	1.99
44135645--44135687	18	2.3	19	80	4	52	41	20	4	32	1.73
44147380--44147451	29	2.5	28	78	8	83	29	30	18	22	1.97
44147634--44147855	43	5.2	43	89	0	327	31	32	23	12	1.91
44151035--44151167	43	3.1	43	90	0	203	28	13	25	32	1.94
44153349--44153448	24	4.4	21	78	12	74	27	21	16	36	1.94
44153382--44153463	24	3.4	24	89	1	110	30	24	12	32	1.92
44153377--44153476	24	4.0	24	85	6	103	30	22	14	34	1.93
44154368--44154435	28	2.3	29	90	10	111	22	22	25	30	1.99
44154374--44154429	28	2.0	28	100	0	112	25	21	21	32	1.98
44157347--44157449	42	2.4	44	77	9	106	30	17	21	31	1.96
44172671--44172765	24	3.9	24	87	5	129	32	13	24	29	1.93
44173839--44173933	27	3.5	27	84	11	124	35	18	17	27	1.94
44173919--44173986	26	2.6	27	88	4	102	41	19	8	30	1.82
44173919--44174212	27	10.9	27	77	5	173	40	18	9	30	1.83
44174472--44174592	41	3.0	41	90	0	170	21	19	31	27	1.98
44174736--44174800	22	3.0	22	80	8	78	21	24	21	32	1.98
44175164--44175433	27	10.0	27	76	5	179	40	19	9	30	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44175693--44175813	41	3.0	41	92	0	179	21	20	31	26	1.98
44175957--44176021	22	3.0	22	78	13	71	21	26	20	32	1.97
44176413--44176616	27	7.5	28	79	8	176	41	19	8	30	1.82
44176412--44176616	81	2.5	81	79	4	227	41	19	8	30	1.82
44176574--44176670	27	3.6	27	82	1	95	47	14	9	28	1.75
44176968--44177086	40	2.9	41	87	2	177	20	22	30	26	1.98
44177231--44177295	22	3.0	22	77	8	69	21	23	23	32	1.98
44177670--44177878	27	7.7	27	84	6	217	43	19	7	30	1.78
44177660--44177917	27	9.6	27	79	7	134	44	17	7	31	1.76
44177670--44177976	54	5.7	54	75	6	151	42	17	8	31	1.79
44177655--44177920	81	3.3	79	76	10	218	43	18	7	31	1.77
44177875--44177963	27	3.3	26	78	13	90	44	12	8	33	1.73
44177875--44177945	28	2.6	25	81	14	79	47	14	7	30	1.70
44177842--44177976	55	2.5	54	76	3	137	42	14	10	32	1.79
44178242--44178356	40	2.8	41	92	2	187	20	21	32	26	1.98
44178505--44178569	22	3.0	22	77	8	69	21	23	23	32	1.98
44178934--44179130	27	7.3	28	84	6	237	43	19	7	29	1.77
44178933--44179218	27	10.6	27	78	8	113	43	17	8	30	1.78
44178933--44179156	54	4.1	54	81	4	211	44	18	7	29	1.77
44178988--44179167	81	2.2	81	82	3	202	44	17	7	30	1.77
44179494--44179608	40	2.8	40	87	6	169	20	24	29	25	1.99
44179753--44179816	22	3.0	22	77	11	69	21	23	21	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44180180--44180497	27	11.8	27	81	3	246	42	19	7	30	1.79
44180763--44180881	40	2.9	41	87	2	159	20	25	27	26	1.99
44180769--44180881	41	2.8	40	89	1	154	19	25	28	26	1.99
44181395--44181661	27	9.9	27	82	4	227	40	19	8	32	1.81
44181395--44181632	107	2.2	108	80	3	284	39	18	8	32	1.81
44181966--44182084	40	2.9	41	91	2	186	21	22	30	26	1.99
44182229--44182293	22	3.0	22	75	8	60	23	27	16	32	1.96
44182650--44182978	27	12.2	27	77	6	134	39	18	9	32	1.83
44182684--44182887	27	7.6	26	82	7	178	43	19	7	29	1.78
44182732--44182940	27	7.7	26	82	5	159	42	17	8	32	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253