genome.fa.s4.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  140  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44765712--44765778	34	2.0	34	90	0	107	20	25	19	34	1.96
44774922--44775047	38	3.3	37	87	2	135	32	13	25	28	1.94
44776702--44776750	19	2.6	18	78	9	53	38	2	2	57	1.22
44783907--44783959	24	2.2	24	89	0	79	50	5	32	11	1.61
44785067--44785102	16	2.4	16	86	13	51	77	0	11	11	0.99
44785699--44785888	96	2.0	96	92	0	317	39	15	18	26	1.90
44790398--44790479	31	2.6	31	82	1	83	59	7	14	18	1.57
44791961--44792081	39	3.1	39	95	2	208	60	3	10	25	1.45
44792805--44792852	10	4.8	10	87	10	71	64	0	8	27	1.22
44792805--44792862	20	2.9	19	85	10	80	65	0	8	25	1.21
44793508--44793697	99	1.9	99	87	4	276	32	23	13	30	1.93
44794679--44794763	6	13.8	6	85	14	104	77	0	1	21	0.83
44797071--44797311	49	4.9	49	76	7	243	26	18	26	29	1.98
44800095--44800139	15	2.9	15	86	3	63	17	15	13	53	1.73
44805792--44805987	49	4.0	50	81	5	245	27	18	26	28	1.98
44805795--44805990	99	2.0	99	89	3	304	26	18	25	29	1.98
44807855--44807928	39	1.9	39	86	5	107	60	2	9	27	1.41
44816768--44817322	287	1.9	287	87	1	799	26	15	29	29	1.96
44824439--44824666	46	5.0	46	85	3	280	40	15	24	20	1.90
44824946--44824978	17	2.0	17	94	5	59	48	0	15	36	1.45
44830747--44830784	19	2.0	20	85	15	53	39	23	0	36	1.55
44831012--44831180	91	1.8	92	92	2	286	28	28	20	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44831007--44831177	46	3.7	46	75	16	183	29	27	20	22	1.99
44838270--44838307	19	2.0	20	85	15	53	39	23	0	36	1.55
44838534--44838704	93	1.8	93	94	0	306	28	29	21	21	1.98
44838529--44838701	46	3.7	46	80	13	219	29	28	20	21	1.98
44847717--44847844	43	3.0	43	83	2	152	27	17	29	25	1.98
44852256--44852285	15	2.1	15	93	6	53	30	6	26	36	1.82
44853983--44854097	43	2.7	43	84	0	158	26	20	28	24	1.99
44857650--44857700	21	2.4	21	90	0	84	19	43	23	13	1.87
44857973--44858030	23	2.5	24	72	8	66	32	12	6	48	1.67
44860833--44860941	29	3.8	29	91	0	173	17	22	40	19	1.91
44866012--44866047	18	2.0	18	88	0	54	30	2	0	66	1.06
44898421--44898683	40	6.6	40	87	3	316	24	20	28	26	1.99
44898460--44898718	80	3.3	80	84	3	238	25	20	28	25	1.99
44904753--44905019	47	5.6	47	96	1	498	29	28	8	32	1.87
44913797--44913844	24	2.0	24	91	4	78	31	16	25	27	1.97
44913775--44913844	25	2.8	25	81	10	81	30	17	22	30	1.97
44918718--44918767	23	2.2	23	100	0	100	38	26	28	8	1.84
44923620--44923697	28	2.7	29	80	7	88	52	10	11	25	1.69
44925096--44925137	22	2.0	21	85	4	57	45	4	0	50	1.23
44928580--44928630	22	2.3	21	80	9	57	43	1	1	52	1.23
44928591--44928642	10	5.1	10	80	11	52	34	0	1	63	1.06
44928590--44928633	22	2.0	22	90	0	70	38	0	2	59	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44928598--44928643	10	4.4	10	83	8	56	30	0	0	69	0.89
44933649--44933694	22	2.1	22	100	0	92	36	28	4	30	1.76
44937827--44937864	19	2.1	18	85	14	51	55	5	2	36	1.37
44937847--44937896	7	7.0	7	79	2	55	52	2	0	46	1.12
44938852--44938893	13	3.2	13	74	12	50	54	0	0	45	0.99
44947192--44947226	16	2.2	16	94	0	61	74	2	0	22	0.95
44947898--44947938	22	1.9	21	85	5	55	26	2	17	53	1.56
44949633--44949681	21	2.3	20	77	16	55	65	4	2	28	1.22
44953758--44953845	40	2.2	39	77	4	95	52	6	19	21	1.69
44955787--44955935	40	3.7	40	90	1	228	23	22	28	24	1.99
44958717--44958749	17	1.9	17	100	0	66	48	0	3	48	1.17
44971293--44971322	14	2.1	14	100	0	60	56	13	10	20	1.65
44972167--44972192	9	2.9	9	100	0	52	92	0	7	0	0.39
44972166--44972194	9	3.0	10	90	10	51	89	0	10	0	0.48
44975060--44975092	17	2.0	17	94	5	59	36	15	0	48	1.45
44975388--44975605	46	4.7	46	94	0	337	21	22	14	41	1.89
44980140--44980177	19	2.0	20	89	5	60	34	0	18	47	1.49
44982371--44982546	46	3.8	45	78	11	187	22	19	28	29	1.98
44982367--44982538	93	1.8	93	91	2	283	22	20	29	28	1.98
44987128--44987158	16	1.9	16	100	0	62	19	3	0	77	0.90
44988782--44988876	40	2.4	40	82	3	122	37	34	14	12	1.84
44994871--44994965	40	2.4	40	84	3	122	38	36	11	12	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44998354--44998387	10	3.0	12	83	16	54	29	0	0	70	0.87
45001465--45001519	28	1.9	28	88	3	83	16	23	41	18	1.89
45011159--45011183	13	1.9	13	100	0	50	24	28	48	0	1.52
45025619--45025670	25	2.1	25	100	0	104	32	11	11	44	1.77
45030094--45030858	47	16.1	47	92	2	1253	32	9	29	28	1.88
45030094--45030858	96	8.0	94	93	2	1253	32	9	29	28	1.88
45030094--45030858	143	5.4	143	92	2	1270	32	9	29	28	1.88
45030977--45031055	37	2.1	37	85	0	104	24	16	31	27	1.96
45037378--45037404	14	1.9	14	100	0	54	37	7	11	44	1.68
45042893--45042937	13	3.5	13	75	0	54	46	8	13	31	1.74
45042886--45042941	26	2.2	26	93	0	94	50	7	17	25	1.72
45042926--45043063	69	2.0	71	92	4	235	47	3	11	36	1.57
45043206--45043232	2	13.5	2	100	0	54	48	0	0	51	1.00
45051199--45051382	40	4.6	40	84	6	239	25	22	26	25	2.00
45051199--45051418	80	2.8	79	86	4	275	25	22	26	25	2.00
45055224--45055257	17	2.0	17	88	0	50	44	14	0	41	1.45
45072702--45072735	17	2.0	17	100	0	68	17	5	35	41	1.74
45094239--45094281	21	2.0	21	100	0	86	37	27	4	30	1.77
45102871--45102948	28	2.8	29	77	11	83	23	26	17	32	1.97
45102866--45102954	28	3.2	28	70	12	74	23	28	15	32	1.95
45106985--45107093	43	2.5	44	82	4	132	32	23	14	29	1.94
45107098--45107223	50	2.6	47	78	10	132	28	29	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45109960--45110041	40	2.1	39	86	2	110	30	28	15	25	1.96
45113061--45113126	13	4.8	13	79	3	60	24	1	25	48	1.60
45113081--45113119	20	2.0	20	90	10	62	23	0	28	48	1.51
45113382--45113444	25	2.4	27	74	15	69	42	0	3	53	1.16
45113416--45113451	19	1.9	19	88	5	56	38	0	2	58	1.13
45117127--45117252	46	2.7	46	95	0	216	29	26	22	21	1.99
45117129--45117271	46	3.1	46	76	13	143	28	27	21	21	1.99
45119873--45119954	27	3.0	27	89	0	110	17	18	24	40	1.91
45121448--45121585	44	3.2	42	85	5	152	32	23	18	25	1.97
45121429--45121586	43	3.7	42	82	4	165	31	25	17	24	1.97
45121429--45121586	86	1.8	85	82	4	201	31	25	17	24	1.97
45127206--45127254	21	2.3	21	100	0	98	20	28	38	12	1.89
45128450--45128685	48	4.9	48	79	4	242	24	30	18	26	1.98
45128450--45128676	97	2.4	96	80	7	264	23	30	18	26	1.98
45138254--45138412	27	5.9	27	80	11	175	35	22	23	18	1.96
45138272--45138412	54	2.6	54	92	2	230	35	23	23	17	1.95
45139976--45140082	26	4.2	26	93	1	189	35	24	7	32	1.83
45145328--45145468	27	5.2	28	87	8	195	34	23	23	18	1.96
45145328--45145468	54	2.6	54	92	4	223	34	23	23	18	1.96
45145572--45145647	26	2.8	27	88	4	100	30	14	22	32	1.94
45146727--45146834	26	4.2	26	93	0	189	36	24	7	32	1.83
45150166--45150227	31	2.0	31	96	0	115	59	20	6	12	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45155884--45155935	25	2.1	25	92	0	86	46	21	23	9	1.80
45158519--45158549	11	2.7	11	95	5	53	16	3	0	80	0.83
45161420--45161448	13	2.2	13	100	0	58	31	0	13	55	1.39
45162271--45162302	10	3.3	10	95	4	57	62	0	6	31	1.20
45162298--45162360	27	2.3	26	76	10	63	50	11	0	38	1.38
45162327--45162356	15	2.0	15	93	0	51	40	10	0	50	1.36
45163942--45163975	13	2.5	14	85	4	52	76	0	2	20	0.92
45170139--45170170	10	3.3	10	95	4	57	62	0	6	31	1.20
45170166--45170228	27	2.3	26	76	10	63	52	11	0	36	1.37
45170195--45170224	15	2.0	15	93	0	51	43	10	0	46	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253