genome.fa.s4.2.7.7.80.10.50.1000.203.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  203  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66713717--66713784	32	2.1	32	97	0	127	45	4	20	29	1.70
66714178--66714229	25	2.1	25	85	7	70	44	0	1	53	1.11
66717899--66717935	9	4.0	9	89	3	56	67	10	0	21	1.21
66719338--66719540	82	2.5	82	92	0	325	27	6	16	50	1.69
66719571--66719718	79	1.9	79	92	2	253	36	8	20	35	1.82
66720201--66720316	18	6.5	18	88	4	164	39	11	12	37	1.78
66720192--66720316	35	3.5	36	91	3	191	39	10	12	37	1.78
66720201--66720316	53	2.2	53	90	4	180	39	11	12	37	1.78
66720795--66720849	17	3.4	16	75	18	53	36	1	0	61	1.06
66720826--66720874	26	1.9	25	83	4	62	36	4	0	59	1.17
66723845--66723879	3	11.7	3	93	0	61	65	0	2	31	1.07
66725559--66725805	133	1.9	132	85	4	345	29	22	19	28	1.98
66725556--66725830	89	3.1	89	77	12	278	28	24	17	29	1.97
66725556--66725804	44	5.6	44	79	8	256	29	22	18	28	1.98
66725556--66725832	133	2.1	133	82	8	339	28	24	18	29	1.98
66725556--66725849	88	3.3	89	77	10	296	28	23	19	28	1.98
66725873--66726039	90	1.9	90	92	2	282	26	24	16	32	1.96
66725872--66726160	45	6.5	44	66	16	148	24	24	19	32	1.97
66726987--66727032	17	2.8	16	83	12	58	2	26	0	71	0.97
66734291--66734343	12	4.4	12	72	9	54	7	24	16	50	1.71
66734291--66734343	24	2.2	24	86	6	72	7	24	16	50	1.71
66734469--66734523	19	2.8	20	81	5	60	45	5	21	27	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66738258--66738289	3	10.7	3	93	0	55	65	0	3	31	1.08
66740596--66740643	17	2.7	18	78	12	55	31	4	4	60	1.35
66742959--66742995	19	1.9	19	94	0	65	5	32	0	62	1.18
66745429--66745461	17	1.9	18	88	11	52	42	12	0	45	1.41
66755172--66755370	25	8.3	25	63	9	101	32	6	30	31	1.83
66755164--66755345	47	3.9	47	97	0	337	31	8	29	30	1.86
66755265--66755408	72	2.0	72	100	0	288	31	6	30	30	1.84
66755218--66755466	119	2.1	120	96	1	464	32	7	29	30	1.84
66755337--66755802	47	9.8	47	95	1	806	32	8	30	29	1.87
66755337--66755802	96	4.9	96	94	3	809	32	8	30	29	1.87
66755164--66755551	215	1.8	213	98	1	749	32	7	29	30	1.86
66755921--66755999	37	2.1	37	90	0	122	24	18	31	25	1.98
66757213--66757402	40	4.8	40	86	2	256	24	21	28	26	1.99
66760804--66761454	47	13.9	47	96	1	1152	31	8	30	29	1.87
66761573--66761650	36	2.1	37	90	2	122	24	19	30	25	1.98
66763197--66763338	49	2.9	49	81	7	178	25	20	26	27	1.99
66764608--66764687	40	2.0	40	100	0	160	30	15	20	35	1.93
66764772--66764811	19	2.1	19	100	0	80	45	7	20	27	1.78
66769971--66769995	13	1.9	13	100	0	50	16	24	52	8	1.70
66783657--66783696	20	2.0	21	85	5	55	62	2	5	30	1.29
66783825--66783867	18	2.3	19	84	8	52	39	6	6	46	1.58
66792203--66792362	43	3.7	42	76	8	126	26	16	24	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66792211--66792359	44	3.5	42	77	6	104	26	17	24	30	1.97
66793356--66793390	13	2.7	13	95	0	61	28	14	31	25	1.95
66795905--66795968	5	12.8	5	100	0	128	40	0	0	59	0.97
66802188--66802287	42	2.3	43	81	5	132	29	18	21	32	1.96
66802149--66802307	43	3.7	43	75	7	153	25	17	25	30	1.97
66806259--66806575	48	6.6	48	81	4	343	27	18	27	26	1.98
66806248--66806575	96	3.4	96	88	2	462	27	18	27	26	1.98
66806259--66806575	144	2.2	144	83	1	402	27	18	27	26	1.98
66822867--66823022	43	3.7	43	70	12	124	27	18	23	30	1.98
66825838--66825890	5	10.6	5	100	0	106	41	0	0	58	0.98
66826365--66826398	17	2.0	17	100	0	68	29	0	23	47	1.52
66834599--66834631	17	2.0	17	88	5	50	21	6	18	54	1.64
66838239--66838451	27	7.9	26	82	11	243	33	22	25	18	1.97
66838257--66838454	54	3.7	54	93	2	328	33	23	25	17	1.96
66840278--66840318	21	2.0	21	90	4	66	43	39	9	7	1.65
66841702--66841757	3	19.0	3	78	10	62	60	3	1	33	1.24
66847281--66847310	7	4.4	7	91	8	53	13	0	0	86	0.57
66847281--66847310	13	2.2	14	94	5	53	13	0	0	86	0.57
66854635--66854666	13	2.5	13	94	0	55	31	43	21	3	1.68
66867974--66868015	13	3.2	13	82	0	57	11	7	9	71	1.31
66871836--66871961	49	2.6	49	89	1	180	32	20	26	19	1.97
66876538--66876595	27	2.1	27	93	0	98	37	12	25	24	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66883093--66883126	15	2.3	15	89	0	50	44	0	8	47	1.34
66889502--66889572	6	11.7	6	80	19	85	18	0	0	81	0.69
66889503--66889573	5	14.0	5	76	20	60	19	0	0	80	0.72
66889521--66889584	32	2.0	32	84	6	85	25	0	1	73	0.92
66890529--66890758	117	2.0	118	92	0	381	22	17	30	28	1.97
66890884--66890926	1	43.0	1	85	0	59	93	0	6	0	0.37
66890884--66890926	12	3.6	12	93	0	68	93	0	6	0	0.37
66891500--66891533	15	2.3	15	89	0	50	44	0	8	47	1.34
66895713--66895765	20	2.6	20	78	3	61	45	15	11	28	1.80
66896364--66896473	57	1.9	57	83	5	141	51	10	10	28	1.67
66896839--66896908	30	2.3	31	80	2	79	48	2	1	47	1.25
66897002--66897101	52	1.9	52	100	0	200	27	13	17	43	1.85
66900179--66900228	20	2.4	21	80	12	59	30	8	8	54	1.58
66903659--66903684	3	8.7	3	100	0	52	69	0	0	30	0.89
66906155--66906331	5	36.0	5	96	3	333	40	0	0	59	0.97
66966301--66966477	77	2.3	77	93	2	295	19	19	28	32	1.96
66971126--66971175	16	3.1	17	80	8	59	42	0	0	58	0.98
66972045--66972165	51	2.4	51	87	2	163	40	11	20	27	1.87
66975732--66975774	18	2.4	18	96	0	77	27	27	13	30	1.95
66981944--66981982	19	2.0	20	85	14	55	56	5	0	38	1.22
66984294--66984386	46	2.0	46	100	0	186	25	17	17	39	1.91
66984405--66984448	22	2.0	21	83	12	54	34	6	11	47	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67003538--67003708	44	3.8	44	73	13	141	25	25	18	30	1.98
67006971--67007067	46	2.1	46	94	0	167	28	23	9	38	1.86
67009106--67009137	16	2.1	15	94	5	55	78	0	6	15	0.95
67019160--67019382	119	1.9	120	82	6	283	25	27	22	24	2.00
67019158--67019382	40	5.7	40	83	6	269	25	27	22	24	2.00
67027177--67027400	40	5.6	40	77	9	217	25	28	22	24	1.99
67037325--67037358	18	1.9	18	88	5	52	14	5	17	61	1.52
67042175--67042241	25	2.7	25	95	0	116	25	28	23	22	1.99
67042476--67042609	31	4.4	31	93	0	225	33	16	26	23	1.96
67043998--67044184	40	4.5	40	75	9	151	27	15	27	29	1.96
67045476--67045505	11	2.6	12	89	10	53	36	0	33	30	1.58
67047027--67047422	27	14.7	27	73	9	173	36	21	9	32	1.86
67047255--67047424	54	3.1	54	84	5	209	36	21	8	32	1.85
67047406--67047546	27	5.2	27	85	0	192	34	16	22	26	1.95
67047296--67047548	54	4.7	54	81	8	205	36	17	16	28	1.93
67047375--67047548	81	2.1	81	81	4	208	35	17	20	27	1.94
67047951--67048011	31	2.0	31	90	0	95	21	22	9	45	1.81
67049587--67049645	27	2.2	27	87	0	91	23	23	18	33	1.97
67049596--67049656	27	2.3	27	82	5	70	22	26	18	32	1.97
67064960--67065035	33	2.3	33	91	6	120	69	5	0	25	1.09
67064982--67065029	25	1.9	25	87	8	71	68	4	0	27	1.07
67064976--67065039	8	7.9	8	76	20	53	71	3	0	25	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67064980--67065038	17	3.5	16	75	9	55	69	3	0	27	1.04
67064982--67065039	25	2.3	25	82	11	66	70	3	0	25	1.03
67070234--67070348	35	3.1	35	65	20	90	25	19	23	32	1.97
67070174--67070354	75	2.4	75	93	0	299	26	20	20	32	1.97
67070640--67070664	13	1.9	13	100	0	50	32	4	24	40	1.73
67072441--67072486	23	2.0	24	86	4	67	17	2	28	52	1.56
67083412--67083459	21	2.3	21	78	7	53	41	0	27	31	1.56
67089815--67089887	29	2.5	29	97	2	137	28	13	12	45	1.80
67094428--67094499	36	2.0	36	83	0	90	55	9	15	19	1.67
67095321--67095350	15	1.9	16	93	6	53	40	26	0	33	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253