genome.fa.s4.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  155  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49833082--49833211	46	2.8	46	90	3	197	19	21	29	30	1.97
49836867--49837053	6	30.8	6	74	16	163	48	14	17	19	1.82
49836846--49837053	30	7.1	30	80	12	227	48	14	17	19	1.82
49836867--49837053	85	2.2	85	96	0	338	48	14	17	19	1.82
49837171--49837236	27	2.5	26	85	7	87	37	22	22	16	1.93
49837195--49837252	27	2.1	27	81	6	64	36	25	20	17	1.94
49837375--49837433	22	2.7	22	81	0	64	32	22	25	20	1.98
49837521--49837576	27	2.1	26	93	3	94	35	23	23	17	1.95
49837775--49837970	27	7.3	27	84	0	230	26	19	17	35	1.95
49837777--49837970	81	2.4	81	85	1	255	26	20	17	36	1.94
49837980--49838303	27	12.0	27	82	4	350	40	8	22	28	1.84
49837975--49838301	81	4.0	81	84	5	410	40	8	22	28	1.83
49837980--49838300	54	5.9	54	86	5	386	40	8	22	28	1.83
49847177--49847277	30	3.2	30	65	26	82	22	16	17	42	1.89
49847160--49847290	65	2.0	65	100	0	262	24	15	18	41	1.88
49850340--49850530	47	4.1	46	87	4	233	26	28	9	35	1.89
49850430--49850501	22	3.1	22	64	24	58	23	29	13	33	1.93
49860013--49860391	47	7.9	47	92	2	605	29	29	8	32	1.87
49860024--49860391	192	1.9	192	94	0	655	29	29	8	32	1.87
49864946--49865116	46	3.7	45	76	13	143	22	28	21	28	1.99
49864945--49865116	94	1.8	92	84	7	231	22	27	20	29	1.99
49868418--49868545	29	4.5	30	87	8	178	32	26	13	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49868417--49868545	57	2.3	57	90	2	206	31	27	13	27	1.94
49874758--49874836	37	2.1	37	90	0	122	25	31	18	24	1.98
49874978--49875026	24	2.0	24	96	0	89	16	40	20	22	1.91
49875006--49875123	47	2.5	47	92	0	191	26	31	11	30	1.92
49878016--49878055	21	2.0	20	85	5	53	30	30	30	10	1.90
49879152--49879374	46	4.9	44	76	13	177	21	28	20	28	1.98
49881580--49881665	26	3.3	26	75	14	88	46	1	2	50	1.21
49881591--49881698	51	2.2	49	82	12	132	49	1	0	48	1.18
49888788--49888855	3	22.7	3	96	0	127	32	0	0	67	0.91
49888854--49888880	3	9.0	3	100	0	54	33	33	0	33	1.58
49890449--49890477	13	2.2	13	100	0	58	48	13	6	31	1.69
49891582--49891634	25	2.2	24	86	3	70	15	24	24	35	1.94
49891805--49891836	8	4.0	8	100	0	64	12	12	37	37	1.81
49893227--49893270	23	1.9	23	86	9	63	31	6	18	43	1.76
49913085--49913190	25	4.4	25	69	15	69	52	0	0	45	1.13
49913088--49913181	11	8.3	11	68	19	59	55	1	0	43	1.06
49913088--49913184	47	2.1	46	82	5	115	54	1	0	44	1.06
49919451--49919489	18	2.2	18	95	0	69	51	5	17	25	1.66
49920405--49920457	20	2.7	20	82	2	63	33	11	13	41	1.80
49920422--49920467	20	2.3	19	82	10	56	36	6	15	41	1.73
49923862--49923914	27	2.0	27	92	0	88	26	24	13	35	1.92
49923865--49923922	27	2.1	27	84	6	73	27	25	12	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49926633--49926672	19	2.1	19	100	0	80	32	5	25	37	1.77
49930831--49930882	18	2.9	18	91	0	86	34	11	15	38	1.83
49930910--49930956	20	2.5	19	89	6	69	40	0	17	42	1.49
49933085--49933155	26	2.7	26	82	0	70	38	21	22	18	1.94
49933274--49933352	22	3.6	22	76	10	81	35	22	26	15	1.94
49933398--49933500	43	2.4	43	88	0	152	27	32	18	22	1.97
49933799--49933916	27	4.4	27	81	6	141	28	11	22	37	1.89
49933800--49933916	54	2.2	55	85	4	166	28	11	22	37	1.89
49933812--49933918	54	2.0	54	90	0	169	28	14	20	36	1.92
49947664--49947800	40	3.5	39	87	5	186	24	26	23	25	2.00
49954184--49954378	101	1.9	101	88	2	293	31	24	13	30	1.94
49954185--49954351	33	5.0	32	72	8	118	32	23	13	31	1.93
49955935--49955988	20	2.7	20	69	11	56	14	20	25	38	1.91
49959124--49959155	13	2.5	13	89	0	55	46	12	3	37	1.57
49973076--49973183	27	4.0	27	87	0	153	33	19	23	24	1.97
49973067--49973179	54	2.1	53	90	4	181	35	16	22	25	1.95
49973990--49974054	25	2.6	25	82	0	76	18	20	16	44	1.87
49974019--49974084	19	3.5	19	74	12	73	18	21	12	48	1.80
49973987--49974105	6	19.3	6	66	17	57	18	18	15	47	1.82
49974022--49974094	37	2.0	37	91	0	119	19	19	12	49	1.79
49974023--49974103	37	2.2	37	86	4	110	18	19	13	48	1.81
49979727--49979937	40	5.3	40	89	4	239	23	20	27	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49987883--49988114	40	5.8	40	93	2	317	24	21	28	26	1.99
50000425--50000618	23	8.4	23	88	1	237	22	21	20	35	1.96
50023411--50023561	40	3.8	40	94	0	248	25	21	28	24	1.99
50031588--50031739	40	3.8	40	95	0	259	24	21	29	24	1.99
50031588--50031759	80	2.2	80	89	1	256	23	20	29	26	1.99
50033891--50034003	6	18.8	6	82	10	142	50	14	15	19	1.78
50033870--50034028	30	5.1	29	80	12	147	49	13	16	19	1.79
50033891--50034003	36	3.3	36	83	14	166	50	14	15	19	1.78
50034146--50034227	27	3.1	27	79	11	89	36	24	23	15	1.94
50034530--50034612	27	3.1	26	84	5	103	37	18	22	21	1.94
50034811--50035005	27	7.3	27	84	1	221	26	18	17	36	1.94
50034813--50035005	80	2.4	81	81	6	221	26	19	17	36	1.93
50035010--50035126	27	4.3	27	73	8	103	41	8	22	28	1.83
50036153--50036186	13	2.6	13	100	0	68	41	23	0	35	1.55
50037125--50037262	6	22.8	6	76	15	133	48	13	17	21	1.80
50037125--50037262	30	4.4	30	81	14	161	48	13	17	21	1.80
50037125--50037262	36	4.1	35	81	15	168	48	13	17	21	1.80
50037380--50037461	27	3.1	27	79	11	89	36	23	23	17	1.94
50037618--50037676	22	2.7	22	81	0	64	32	22	25	20	1.98
50037764--50037846	27	3.1	26	84	8	96	36	20	21	21	1.96
50038045--50038232	27	7.0	27	84	0	214	25	20	18	35	1.95
50038045--50038232	54	3.5	54	84	0	241	25	20	18	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50038249--50038347	27	3.7	27	77	10	121	42	8	21	28	1.81
50038261--50038363	54	1.9	54	88	4	154	40	9	20	29	1.84
50051925--50052007	27	3.3	27	63	27	72	32	4	30	32	1.79
50051876--50052091	49	4.4	49	91	3	339	32	7	31	28	1.85
50055773--50055994	46	4.8	45	81	10	216	27	17	31	24	1.97
50055772--50056035	46	5.7	45	76	11	185	27	17	30	24	1.97
50055774--50056035	140	1.9	140	81	6	325	27	17	30	24	1.97
50060137--50060194	21	2.8	21	89	0	89	25	27	31	15	1.96
50085216--50085323	55	2.0	55	86	0	153	26	26	28	17	1.98
50101549--50101576	7	4.0	7	100	0	56	28	14	0	57	1.38
50101562--50101623	31	2.0	31	90	0	97	27	22	16	33	1.95
50101834--50101917	26	3.4	25	90	6	118	27	22	22	27	1.99
50105150--50105205	21	2.7	21	94	0	94	28	8	33	28	1.87
50109305--50109376	31	2.3	32	83	9	87	38	0	2	58	1.13
50111166--50111383	46	4.7	46	90	0	319	40	15	24	19	1.90
50113375--50113421	23	2.0	23	100	0	94	21	31	21	25	1.98
50115235--50115429	39	5.0	38	87	3	228	33	29	18	17	1.95
50120472--50120577	53	2.0	53	84	0	140	26	23	13	36	1.92
50121173--50121228	27	2.1	27	93	0	94	41	30	3	25	1.72
50121183--50121236	27	2.0	27	92	0	90	44	27	5	22	1.75
50124676--50124796	55	2.2	56	90	1	190	31	2	5	60	1.33
50133552--50133702	43	3.5	44	84	4	191	29	13	23	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50137487--50137530	23	1.9	23	86	9	63	79	2	6	11	1.01
50144162--50144278	58	2.0	58	100	0	234	44	15	18	21	1.86
50150277--50150637	47	7.6	47	90	3	517	31	8	30	29	1.87
50150277--50150637	147	2.5	143	89	4	525	31	8	30	29	1.87
50150277--50150637	194	1.9	188	87	4	535	31	8	30	29	1.87
50156359--50156408	20	2.5	20	83	0	64	6	30	24	40	1.79
50157407--50157445	20	2.0	20	89	0	60	46	15	5	33	1.68
50158675--50158734	19	3.2	19	90	2	86	23	18	23	35	1.96
50161467--50161511	24	1.9	23	86	4	63	8	42	4	44	1.56
50162731--50162850	43	2.8	42	83	7	170	31	15	24	29	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253