genome.fa.s4.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  104  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32392892--32392922	10	2.9	11	95	4	55	22	9	0	67	1.19
32402334--32402412	37	2.1	37	90	0	122	25	31	18	24	1.98
32402531--32402867	47	7.1	47	90	2	494	28	30	9	32	1.88
32402531--32402867	96	3.6	96	89	4	497	28	30	9	32	1.88
32402531--32402867	143	2.4	143	92	0	557	28	30	9	32	1.88
32407871--32407937	30	2.3	29	86	2	98	23	14	25	35	1.94
32420839--32420868	15	2.0	15	100	0	60	40	6	20	33	1.78
32433503--32433554	27	1.9	27	88	0	77	36	15	26	21	1.93
32437153--32437337	79	2.3	81	84	7	236	25	27	22	24	2.00
32437153--32437337	40	4.7	40	83	7	234	25	27	22	24	2.00
32444890--32445074	79	2.3	81	84	7	236	25	27	22	24	2.00
32444890--32445074	40	4.7	40	83	7	234	25	27	22	24	2.00
32456560--32456688	28	4.6	27	76	10	118	26	17	32	23	1.97
32456751--32456834	32	2.6	32	88	0	123	38	10	20	30	1.87
32457349--32457491	69	2.1	70	94	1	252	23	18	18	39	1.92
32464315--32464411	30	3.2	30	71	8	90	27	15	28	27	1.96
32476507--32477252	47	15.7	47	95	1	1305	32	8	29	29	1.87
32476554--32476632	25	3.3	25	61	10	65	32	5	29	32	1.79
32476528--32477252	143	5.1	143	96	1	1300	32	8	29	29	1.87
32476507--32477252	190	3.9	189	96	1	1309	32	8	29	29	1.87
32477370--32477448	37	2.1	37	90	0	122	24	18	31	25	1.98
32478661--32479129	40	11.8	40	93	1	717	23	21	28	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32489281--32489321	14	2.9	14	88	0	55	48	7	34	9	1.64
32491028--32491072	14	3.3	14	84	6	65	48	13	0	37	1.42
32493150--32493194	14	3.3	14	78	6	56	48	15	0	35	1.45
32505411--32505445	16	2.1	17	89	10	54	11	5	5	77	1.12
32505424--32505468	13	3.5	13	96	0	81	13	2	4	80	0.97
32508319--32508363	14	3.3	14	84	6	65	48	13	0	37	1.42
32508346--32508451	42	2.5	42	96	1	194	41	14	11	33	1.81
32509348--32509427	37	2.2	37	86	4	108	28	30	17	23	1.97
32509546--32513122	47	75.7	47	89	7	3512	30	28	8	31	1.87
32509546--32513122	96	37.4	94	89	6	5341	30	28	8	31	1.87
32509546--32513122	143	25.2	140	89	6	5239	30	28	8	31	1.87
32510863--32510938	22	3.3	22	64	10	62	27	30	11	30	1.92
32510932--32510990	25	2.3	27	88	11	104	37	27	0	35	1.57
32510885--32511039	74	2.1	74	98	0	301	32	28	5	33	1.81
32511656--32511731	22	3.3	22	64	10	62	27	30	11	30	1.92
32516407--32516913	40	12.8	40	94	2	797	26	29	20	23	1.99
32516407--32516913	119	4.2	120	93	1	815	26	29	20	23	1.99
32518126--32518202	36	2.1	36	87	0	109	25	31	18	24	1.97
32518320--32518806	47	10.2	47	95	2	821	29	29	8	32	1.87
32518320--32518806	143	3.4	143	95	1	843	29	29	8	32	1.87
32520144--32520294	27	5.6	27	81	7	171	29	28	15	26	1.96
32538645--32538812	40	4.2	40	83	8	218	25	22	26	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32551923--32552106	67	2.8	64	80	8	194	24	30	15	29	1.96
32552542--32552598	30	1.9	30	85	0	78	26	22	8	42	1.83
32552941--32553186	123	2.0	123	98	0	474	24	21	15	37	1.93
32553524--32553793	96	2.9	91	75	15	246	26	18	29	25	1.98
32557699--32557823	44	2.9	42	75	11	121	32	26	17	24	1.97
32567569--32567667	39	2.5	39	95	0	171	27	30	22	20	1.98
32575452--32575632	39	4.6	39	89	0	272	30	28	19	21	1.97
32579874--32580032	43	3.7	42	79	5	158	33	27	16	22	1.95
32584283--32584332	18	2.7	19	72	6	50	18	24	40	18	1.91
32586143--32586425	41	6.9	40	84	7	311	34	24	23	17	1.96
32586166--32586425	82	3.2	81	87	4	364	34	25	23	17	1.96
32586166--32586426	122	2.1	122	88	5	393	34	24	22	17	1.95
32587440--32587507	24	2.8	24	73	10	66	58	0	4	36	1.18
32591366--32592067	290	2.4	287	98	1	1352	36	13	13	36	1.84
32592279--32592334	15	3.8	15	77	20	64	46	1	0	51	1.11
32592439--32592655	27	7.9	27	80	9	213	47	13	1	38	1.52
32592440--32592708	9	29.4	9	77	8	186	47	12	1	38	1.49
32592435--32592594	71	2.2	71	87	3	223	48	13	1	36	1.51
32592511--32592732	114	1.9	114	86	3	313	47	12	0	38	1.48
32592660--32592758	43	2.3	45	81	10	125	47	13	1	38	1.49
32599304--32599516	43	4.9	44	87	7	251	27	28	20	23	1.99
32599344--32599516	87	2.0	86	89	3	267	28	27	21	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32601990--32602194	27	7.6	27	86	3	259	30	27	15	26	1.96
32609901--32610105	27	7.6	27	86	3	259	30	27	15	26	1.96
32618421--32618532	42	2.6	42	80	11	120	22	28	22	26	1.99
32618421--32618549	45	3.0	44	80	11	133	24	27	22	24	2.00
32626922--32627099	27	6.6	27	75	3	144	38	22	8	30	1.84
32626922--32627100	81	2.2	80	80	2	187	37	22	8	30	1.84
32627091--32627545	27	16.9	27	84	3	454	37	18	19	24	1.94
32627091--32627545	81	5.6	81	85	2	556	37	18	19	24	1.94
32627937--32628001	22	3.0	22	80	8	78	20	26	23	30	1.98
32628331--32628409	6	12.8	6	70	15	54	18	18	12	49	1.79
32628334--32628397	25	2.6	25	89	0	92	18	20	14	46	1.83
32628381--32628415	18	1.9	18	94	0	61	20	14	8	57	1.63
32632135--32632168	17	2.0	17	94	0	59	55	0	5	38	1.24
32633254--32633339	24	3.6	24	95	3	147	20	12	30	36	1.90
32633257--32633387	48	2.7	48	78	11	126	23	12	28	35	1.92
32633254--32633387	72	1.9	72	82	3	171	23	12	29	35	1.91
32634929--32635082	28	5.5	28	97	0	274	33	28	11	25	1.91
32643125--32643275	28	5.4	28	92	1	223	33	28	11	25	1.92
32647101--32647173	27	2.8	26	89	4	110	36	20	24	17	1.94
32647339--32647403	22	3.0	22	80	8	78	30	23	26	20	1.98
32647826--32648337	27	19.0	27	85	0	637	24	20	18	36	1.95
32648330--32648499	27	6.3	27	77	2	135	34	8	20	37	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32648377--32648540	27	6.1	27	82	2	159	32	9	20	37	1.84
32648395--32648553	81	2.0	80	80	3	176	31	9	20	38	1.84
32648384--32648561	27	6.6	26	77	9	119	30	8	20	39	1.83
32651401--32651446	23	2.0	23	84	12	60	45	10	6	36	1.65
32651408--32651452	23	2.0	23	82	8	56	40	13	8	37	1.76
32655227--32655266	21	2.0	21	90	5	64	20	27	40	12	1.88
32655835--32656000	46	3.6	45	83	8	167	22	30	18	27	1.98
32663570--32663696	46	2.8	45	84	8	168	23	29	18	27	1.98
32671687--32671880	47	4.1	47	91	0	298	32	11	29	26	1.91
32671716--32671787	22	3.1	22	64	24	58	33	13	29	23	1.93
32671761--32671836	23	3.2	25	62	24	63	28	13	34	23	1.92
32680068--32680198	50	2.6	50	86	1	163	31	15	13	39	1.86
32692124--32692305	40	4.6	40	90	2	260	28	26	21	23	1.99
32698584--32698662	29	2.7	29	86	5	106	27	32	15	24	1.95
32705979--32706156	27	6.6	27	83	3	205	26	15	28	29	1.96
32705980--32706135	82	1.9	81	88	3	233	26	15	28	29	1.96
32705976--32706156	82	2.2	81	83	2	229	27	15	27	29	1.96
32714101--32714278	27	6.6	27	83	3	205	26	15	28	29	1.96
32714102--32714257	82	1.9	81	88	3	233	26	15	28	29	1.96
32714098--32714278	82	2.2	81	83	2	229	27	15	27	29	1.96
32719726--32719775	11	4.7	11	85	11	61	12	4	6	78	1.08
32720145--32720184	14	2.9	14	88	0	53	50	7	32	10	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32721649--32721824	46	3.8	46	78	15	209	20	20	29	29	1.98
32721646--32721815	93	1.8	93	96	0	313	21	20	29	28	1.98
32725732--32725853	47	2.6	47	92	2	201	37	13	22	26	1.91
32725826--32725990	54	3.1	54	82	4	190	36	15	23	24	1.94
32731044--32731222	85	2.1	85	97	0	340	36	8	28	26	1.85
32733408--32733888	47	10.1	47	89	3	701	30	12	31	25	1.93
32733408--32733888	145	3.3	145	92	1	772	30	12	31	25	1.93
32733627--32733702	24	3.2	24	62	23	61	28	13	32	25	1.93
32733699--32733776	25	3.2	25	63	23	67	28	10	32	29	1.90
32733862--32733952	46	2.0	46	86	0	128	34	9	30	25	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253