genome.fa.s4.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  150  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48071137--48071321	40	4.7	40	82	6	216	24	22	27	25	2.00
48071190--48071354	79	2.1	79	82	6	192	26	20	27	26	1.99
48073639--48073851	119	1.8	112	82	6	264	51	13	4	30	1.61
48074057--48074086	13	2.2	14	94	5	53	56	3	0	40	1.16
48075231--48076188	90	10.7	90	89	1	1435	27	28	14	29	1.96
48075231--48076181	444	2.1	447	89	1	1424	27	28	14	29	1.96
48076295--48076403	53	2.0	54	96	1	202	38	11	12	36	1.81
48090019--48090365	47	7.4	47	93	0	577	28	31	8	31	1.86
48090282--48090357	22	3.3	22	64	10	62	28	31	10	28	1.90
48093103--48093195	22	4.3	22	72	6	64	23	1	30	45	1.60
48093155--48093203	15	3.4	14	83	10	55	18	0	36	44	1.50
48093162--48093206	14	3.1	15	87	9	58	20	0	40	40	1.52
48093184--48093231	21	2.2	21	88	7	69	18	0	37	43	1.51
48093237--48093284	15	3.4	14	77	13	53	22	2	35	39	1.66
48093389--48093490	22	4.8	22	71	17	72	27	0	26	45	1.60
48093447--48093480	15	2.3	15	90	5	52	26	0	26	47	1.53
48093482--48093522	14	2.9	15	85	7	59	19	2	43	34	1.64
48093544--48093611	34	2.0	34	97	0	127	27	2	17	51	1.60
48093013--48093549	291	1.9	281	83	7	674	29	2	22	45	1.64
48098928--48098998	21	3.2	21	75	18	65	66	4	0	29	1.11
48098940--48099004	29	2.1	29	86	11	85	67	3	0	29	1.05
48099033--48099081	15	3.4	15	72	11	57	71	0	0	28	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48099036--48099090	20	2.8	19	74	17	58	69	0	0	30	0.89
48099013--48099088	8	8.1	9	69	23	50	64	0	3	31	1.12
48099025--48099082	28	2.0	29	93	3	100	65	0	1	32	1.03
48099038--48099090	11	5.2	11	74	23	53	69	0	0	30	0.88
48106250--48106296	24	2.0	24	100	0	94	25	34	27	12	1.92
48107666--48107881	50	4.3	50	84	4	274	38	19	12	29	1.88
48117014--48117205	40	4.8	40	90	1	217	27	27	20	23	1.99
48129121--48129514	50	7.9	50	74	6	357	31	24	16	27	1.97
48129132--48129514	101	3.8	100	77	8	318	31	24	16	27	1.96
48129124--48129515	150	2.6	150	90	2	599	31	24	16	27	1.97
48148450--48148509	30	2.0	30	90	0	93	30	25	8	36	1.85
48155968--48156027	30	2.0	30	90	0	93	30	25	8	36	1.85
48156955--48156989	12	3.0	12	91	4	54	54	0	22	22	1.45
48156955--48156997	19	2.3	18	88	4	59	53	0	23	23	1.46
48161438--48161463	13	2.0	13	100	0	52	38	7	15	38	1.76
48165441--48165515	28	2.7	28	87	0	96	36	12	22	29	1.90
48171395--48171468	29	2.6	29	86	4	96	27	16	31	25	1.96
48189455--48189501	23	2.0	23	100	0	94	34	4	25	36	1.76
48193661--48193837	27	6.6	27	83	4	205	29	28	15	27	1.96
48193661--48193837	55	3.3	53	83	4	212	29	28	15	27	1.96
48193681--48193836	82	1.9	81	88	3	233	29	28	15	26	1.96
48201865--48202042	27	6.6	27	84	3	205	29	28	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48201886--48202041	82	1.9	81	88	3	233	29	28	15	26	1.96
48212514--48212590	38	2.0	38	100	0	154	46	15	7	29	1.74
48214818--48214871	25	2.1	26	83	10	67	59	1	5	33	1.31
48222494--48222556	31	2.1	31	84	3	83	34	6	25	33	1.81
48223162--48223291	49	2.7	49	87	2	181	30	20	27	21	1.98
48227964--48227996	13	2.6	13	90	4	50	48	12	0	39	1.40
48230671--48230762	45	2.0	45	95	0	166	16	21	18	43	1.88
48230931--48231023	6	17.0	5	82	13	73	78	0	4	17	0.91
48230931--48231021	12	8.2	11	80	14	91	79	0	4	16	0.89
48236403--48236435	13	2.6	13	90	4	50	48	12	0	39	1.40
48240141--48240239	40	2.6	38	85	3	126	12	11	38	38	1.78
48261334--48261383	11	4.8	11	76	11	52	36	14	18	32	1.90
48265158--48265227	35	2.0	35	94	0	122	35	10	20	34	1.86
48268730--48268864	72	1.9	72	90	0	216	22	28	15	34	1.94
48278597--48278657	28	2.2	28	100	0	122	37	13	18	31	1.88
48279704--48279733	15	2.0	15	93	0	51	53	10	0	36	1.35
48282800--48282834	16	2.2	16	89	0	52	51	20	20	8	1.73
48283049--48283138	29	3.1	28	83	10	119	28	12	27	31	1.93
48287652--48287691	15	2.7	15	96	0	71	35	0	27	37	1.57
48287691--48287744	23	2.3	23	90	0	81	22	18	25	33	1.97
48289707--48289939	49	4.7	49	80	3	259	30	26	16	26	1.97
48290168--48290219	27	1.9	27	84	0	68	40	11	7	40	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48292650--48292881	49	4.7	49	82	7	281	25	17	26	31	1.97
48313140--48313209	30	2.2	32	87	7	99	27	34	12	25	1.92
48318667--48318838	49	3.5	50	78	4	145	25	28	18	27	1.98
48322961--48323219	46	5.6	46	71	5	225	29	29	18	22	1.97
48322970--48323233	93	2.8	93	90	0	420	28	29	18	23	1.98
48323015--48323183	47	3.6	47	69	10	166	29	29	18	22	1.97
48326689--48326718	15	2.0	15	93	0	51	53	10	0	36	1.35
48335493--48335663	46	3.7	46	78	6	150	29	18	28	23	1.98
48336056--48336089	17	2.0	17	94	0	59	55	0	5	38	1.24
48337412--48337546	24	5.6	24	88	3	182	20	13	34	32	1.91
48343817--48343850	17	2.0	17	94	0	59	55	0	5	38	1.24
48346309--48346490	49	3.7	49	85	2	211	28	27	18	25	1.98
48348212--48348392	24	7.5	24	87	2	247	22	14	31	32	1.93
48356476--48356532	30	1.9	30	88	0	87	35	14	24	26	1.93
48356869--48357082	46	4.6	46	74	16	174	28	18	28	24	1.98
48356869--48357134	47	5.7	47	79	12	214	27	18	29	24	1.98
48356869--48357137	140	1.9	141	86	6	386	27	18	29	24	1.98
48356913--48357135	47	4.8	47	81	8	233	27	19	30	23	1.98
48360237--48360477	40	6.1	40	92	3	375	25	28	22	23	1.99
48362240--48362275	16	2.2	16	95	0	63	16	30	22	30	1.96
48382761--48382904	29	5.1	28	78	11	116	29	13	30	26	1.94
48382771--48382904	28	4.7	28	75	12	121	28	14	32	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48387882--48387909	12	2.3	12	100	0	56	7	17	42	32	1.77
48393940--48393977	16	2.4	16	95	0	67	21	23	0	55	1.44
48399888--48400065	27	6.6	27	82	3	196	29	28	15	26	1.96
48399909--48400064	82	1.9	81	86	3	224	28	28	16	26	1.97
48403394--48403461	27	2.5	27	85	4	93	16	25	23	35	1.95
48403416--48403469	27	2.0	27	85	7	74	18	27	22	31	1.97
48406201--48406376	46	3.8	46	77	14	200	19	20	29	30	1.97
48406198--48406369	93	1.8	93	95	2	310	20	20	29	29	1.98
48425084--48425120	17	2.2	17	90	0	56	24	5	24	45	1.74
48425259--48425343	16	5.3	16	74	13	68	30	12	12	43	1.81
48429903--48430369	241	2.0	232	86	3	646	45	6	10	37	1.65
48430420--48430463	16	2.6	17	82	7	54	45	2	2	50	1.27
48433329--48433361	14	2.4	14	95	5	59	60	0	6	33	1.21
48436926--48436983	29	2.0	29	96	0	107	41	6	12	39	1.69
48440062--48440093	15	2.0	17	88	11	50	43	31	0	25	1.55
48442901--48443125	40	5.7	40	84	5	244	26	21	26	25	1.99
48442901--48443125	79	2.8	80	79	10	253	26	21	26	25	1.99
48442905--48443125	119	1.9	120	82	10	283	27	20	26	25	1.99
48446776--48446836	30	2.0	30	83	0	77	31	22	8	37	1.84
48450866--48450998	39	3.4	40	78	3	110	32	25	21	21	1.98
48450899--48451297	39	10.1	39	79	7	201	29	25	22	22	1.99
48450948--48451279	40	8.4	40	83	3	377	28	26	23	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48450948--48451276	119	2.8	119	84	3	448	29	26	22	21	1.99
48450875--48451297	158	2.7	158	85	2	528	29	25	22	22	1.99
48450907--48451295	119	3.3	117	81	6	433	29	26	22	21	1.99
48454284--48454460	48	3.7	47	79	4	142	22	25	22	29	1.99
48456616--48457265	48	13.4	48	92	1	1039	30	26	7	36	1.83
48456624--48457264	194	3.3	194	95	0	1088	30	26	7	36	1.83
48456616--48457265	242	2.7	243	94	0	1117	30	26	7	36	1.83
48460486--48460585	28	3.6	27	78	8	92	32	30	17	21	1.95
48460617--48460985	40	9.2	40	91	4	568	26	27	21	24	1.99
48462485--48463082	48	12.4	48	92	2	977	30	26	6	36	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253