genome.fa.s4.2.7.7.80.10.50.1000.202.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  202  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66317494--66317565	34	2.1	34	85	10	94	29	20	23	26	1.99
66320187--66320360	47	3.7	48	80	6	178	27	17	30	24	1.97
66320187--66320360	94	1.8	94	84	8	237	27	17	30	24	1.97
66321409--66321462	22	2.5	22	87	3	83	18	37	22	22	1.95
66324697--66324774	34	2.3	34	82	8	88	32	24	20	23	1.98
66332105--66332153	21	2.3	21	79	10	55	57	22	6	14	1.59
66338153--66338201	21	2.3	21	79	10	55	57	24	6	12	1.58
66338667--66338695	15	2.0	15	93	6	51	51	0	0	48	1.00
66338684--66338727	10	4.4	10	81	18	56	43	0	0	56	0.99
66342463--66342760	40	7.5	40	93	1	424	23	23	27	25	2.00
66346052--66346179	43	3.0	42	79	8	143	31	26	17	24	1.97
66350823--66350853	10	3.1	10	95	0	53	45	0	9	45	1.36
66355143--66355206	28	2.3	26	79	15	67	50	6	0	43	1.27
66355239--66355291	2	28.0	2	81	11	58	49	0	0	50	1.00
66355236--66355291	20	2.7	22	78	13	64	51	0	0	48	1.00
66357594--66357653	29	2.1	29	100	0	120	26	20	13	40	1.89
66360603--66360651	6	8.2	6	97	0	71	6	48	10	34	1.62
66366451--66366499	21	2.3	21	85	0	62	26	8	18	46	1.76
66383425--66383476	21	2.7	20	80	13	65	75	0	13	11	1.06
66396167--66396224	26	2.1	27	81	12	66	31	15	1	51	1.53
66396720--66397051	128	2.6	125	82	6	364	29	16	18	35	1.93
66396767--66397051	127	2.2	127	83	5	362	27	18	18	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66414318--66414471	60	2.5	62	81	4	186	29	24	20	25	1.99
66424342--66424375	17	1.9	18	88	5	52	61	0	14	23	1.33
66425602--66425679	30	2.6	30	79	0	84	39	3	11	44	1.59
66428354--66428387	17	2.1	16	88	5	50	70	0	14	14	1.17
66436885--66437104	49	4.6	48	74	11	193	27	27	17	26	1.98
66439901--66439933	16	2.1	16	100	0	66	30	30	12	27	1.92
66448321--66448355	16	2.2	16	89	0	52	31	28	31	8	1.87
66454575--66454680	55	1.9	55	81	11	128	17	24	35	21	1.95
66457240--66457318	27	2.8	27	84	5	104	32	21	25	20	1.97
66457434--66457497	28	2.3	28	91	5	103	29	7	29	32	1.86
66464068--66464100	17	1.9	17	93	0	57	33	0	9	57	1.30
66465108--66465197	27	3.2	27	76	7	83	32	22	24	21	1.98
66465303--66465394	28	3.3	28	92	3	150	31	7	27	33	1.85
66473803--66473967	43	3.9	43	86	4	192	23	21	31	23	1.98
66479995--66480237	122	2.0	122	98	0	468	31	11	21	35	1.89
66486221--66486278	21	2.9	21	92	5	93	43	18	25	12	1.85
66489466--66489533	21	3.2	21	67	19	52	19	17	16	47	1.83
66489533--66489587	21	2.7	20	75	5	65	18	27	18	36	1.94
66489520--66489616	41	2.3	41	82	1	113	15	22	18	43	1.88
66495452--66495622	46	3.7	46	78	10	186	23	20	26	29	1.99
66495447--66495617	93	1.8	93	89	0	270	22	20	27	29	1.99
66510040--66510077	12	3.0	13	84	7	51	63	0	0	36	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66510041--66510081	13	3.2	13	86	6	57	65	0	0	34	0.93
66510476--66510524	13	3.8	13	78	5	55	40	26	0	32	1.56
66517522--66517564	22	2.0	21	82	13	52	41	2	0	55	1.12
66519163--66519233	37	1.9	37	97	0	133	38	2	22	36	1.69
66521108--66521237	47	2.8	47	81	0	161	30	27	16	25	1.96
66522569--66522682	51	2.2	51	82	11	128	52	0	2	43	1.21
66523114--66523156	18	2.4	18	92	0	77	25	16	18	39	1.91
66527624--66527839	46	4.7	44	75	15	145	27	18	29	24	1.98
66530665--66530722	28	2.0	29	83	3	73	27	5	3	63	1.31
66534555--66534693	62	2.2	62	85	2	181	32	25	19	22	1.97
66534648--66534691	23	1.9	23	95	0	79	36	27	15	20	1.93
66534785--66534937	83	1.8	83	85	0	216	40	19	11	28	1.86
66534785--66534939	42	3.7	42	89	1	204	40	19	10	29	1.86
66537990--66538018	2	14.5	2	100	0	58	48	0	51	0	1.00
66540892--66541030	71	2.0	71	86	2	199	40	7	8	43	1.63
66541890--66542009	37	3.2	36	75	14	102	23	14	14	48	1.80
66543359--66543413	3	18.3	3	100	0	110	32	0	0	67	0.91
66543682--66543718	11	3.4	11	100	0	74	29	0	8	62	1.24
66546349--66546560	35	6.1	35	83	2	246	31	11	20	36	1.89
66555305--66555337	11	2.9	12	86	13	52	33	0	0	66	0.92
66555462--66555526	30	2.1	32	88	5	98	58	10	3	27	1.47
66565440--66565479	21	2.0	20	85	5	53	37	0	20	42	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66570837--66570889	24	2.2	24	86	0	70	32	7	9	50	1.62
66574966--66575038	36	2.0	36	89	0	110	27	30	20	21	1.98
66574972--66575033	18	3.5	17	70	16	54	27	27	22	22	1.99
66575177--66575229	24	2.2	24	82	0	61	32	7	9	50	1.62
66575196--66575737	268	2.0	268	94	0	949	32	11	12	43	1.78
66578060--66578243	92	2.0	92	97	0	350	31	19	9	39	1.83
66580450--66580492	17	2.5	17	100	0	86	30	11	9	48	1.71
66585833--66585876	20	2.1	21	88	12	65	45	6	2	45	1.42
66591927--66591971	18	2.5	18	88	0	63	26	33	24	15	1.95
66596409--66596441	9	3.7	9	95	0	57	12	39	0	48	1.40
66612150--66612251	50	2.0	50	94	0	177	27	11	8	51	1.68
66614727--66614757	9	3.6	9	91	8	55	12	0	0	87	0.55
66622381--66622532	78	1.9	78	92	2	252	32	20	14	32	1.93
66622497--66622585	39	2.3	39	88	2	133	38	20	11	30	1.87
66622497--66622633	40	3.5	40	84	2	159	35	21	13	30	1.91
66622521--66622633	39	2.9	39	86	1	145	36	19	14	30	1.91
66633172--66633369	43	4.6	43	94	0	351	30	32	25	11	1.90
66633362--66633464	38	2.7	38	86	0	134	31	26	19	23	1.98
66636373--66636412	21	2.0	20	90	5	62	35	0	22	42	1.54
66636378--66636420	21	2.1	21	83	12	54	32	2	20	44	1.65
66644431--66644628	98	2.0	98	98	0	378	31	19	15	33	1.93
66648632--66648663	13	2.4	14	90	10	50	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66649730--66649780	20	2.5	20	84	6	68	58	5	0	35	1.22
66653238--66653262	5	5.0	5	100	0	50	80	0	0	20	0.72
66653517--66653583	20	3.4	20	80	8	75	59	2	2	34	1.28
66653779--66653832	26	2.1	26	82	6	65	27	22	11	38	1.88
66659271--66659325	27	2.0	27	100	0	110	56	7	10	25	1.59
66659699--66659742	17	2.5	17	75	17	54	40	0	0	59	0.98
66663349--66663427	25	3.3	25	61	10	65	32	5	29	32	1.79
66663341--66663667	47	6.9	47	93	3	525	32	8	30	29	1.86
66663786--66663864	37	2.1	37	85	0	104	25	17	30	26	1.97
66665077--66665340	40	6.7	40	95	1	442	21	22	30	25	1.98
66668748--66669121	47	7.9	47	94	1	633	31	8	30	28	1.87
66668748--66669119	189	2.0	187	94	1	645	31	8	30	28	1.88
66669240--66669318	37	2.1	37	88	0	113	25	18	30	25	1.98
66676418--66676462	19	2.4	19	96	0	81	26	6	6	60	1.47
66676836--66676889	20	2.7	19	80	8	63	27	1	3	66	1.19
66676824--66676888	10	6.3	10	77	13	51	24	1	4	69	1.16
66679526--66679585	7	9.0	7	81	17	58	23	5	0	71	1.05
66680795--66680973	99	1.8	99	87	0	268	26	15	26	31	1.95
66680993--66681039	15	3.4	14	80	13	62	82	0	14	2	0.75
66681656--66681704	10	4.9	10	80	9	64	22	8	2	67	1.28
66684615--66684707	37	2.4	37	81	13	100	39	3	4	52	1.37
66684765--66684805	20	2.0	21	85	4	57	51	2	0	46	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66687277--66687384	37	2.9	36	78	16	107	40	2	3	52	1.33
66687935--66687969	13	2.8	12	86	4	52	2	34	0	62	1.10
66688662--66688823	34	4.9	34	84	3	195	32	13	12	41	1.83
66697127--66697209	38	2.2	38	93	2	139	43	10	15	30	1.81
66704475--66704660	102	1.8	102	88	0	282	25	22	21	30	1.99
66704871--66704905	9	3.7	9	88	11	52	37	2	0	60	1.12
66709463--66709628	43	3.9	42	77	10	142	32	25	16	24	1.96
66709463--66709628	86	1.9	85	82	10	205	32	25	16	24	1.96
66712666--66712696	11	2.8	11	90	0	53	32	0	0	67	0.91
66712818--66712879	30	2.1	30	93	0	106	54	12	3	29	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253